Ec-00_002780.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002780.1
Unique NameEc-00_002780.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length248
Homology
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BLAST of Ec-00_002780.1 vs. uniprot
Match: D8LN52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN52_ECTSI)

HSP 1 Score: 521 bits (1341), Expect = 4.770e-184
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1 
Query:    1 MRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSEDSLWANPWDWFRVAVPSLSRSDNDSPLSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAEDWSAHSWGVYFSSQESPFSVWSARLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIAVLIGHAARKKNMFKPLNEAAGPAVADRW 741
            MRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSEDSLWANPWDWFRVAVPSLSRSDNDSPLSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAEDWSAHSWGVYFSSQESPFSVWSARLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIAVLIGHAARKKNMFKPLNEAAGPAVADRW
Sbjct:  204 MRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSEDSLWANPWDWFRVAVPSLSRSDNDSPLSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAEDWSAHSWGVYFSSQESPFSVWSARLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIAVLIGHAARKKNMFKPLNEAAGPAVADRW 450
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BLAST of Ec-00_002780.1 vs. uniprot
Match: A0A6H5JN14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN14_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 8.960e-97
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:    1 MRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSEDSLWANPWDWFRVAVPSLSRSDNDSPLSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAE 414
            MRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPS +SLWANPWDWFRVAVPSLSRSDNDSP+SYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAE
Sbjct:  204 MRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSGESLWANPWDWFRVAVPSLSRSDNDSPMSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAE 341
[Close]
BLAST of Ec-00_002780.1 vs. uniprot
Match: A0A6H5JNH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH5_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 5.960e-68
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 1 
Query:  412 EDWSAHSWGVYFSSQESPFSVWSARLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIAVLIGHAARKKNMFKPLNEAAGPAVADRW 741
            EDWSAHSWGVYFSSQESPFSVWS RLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWI VLIGHAARKKN+FKPLN+AA  AVADRW
Sbjct:   10 EDWSAHSWGVYFSSQESPFSVWSWRLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIVVLIGHAARKKNIFKPLNDAASAAVADRW 119
The following BLAST results are available for this feature:
BLAST of Ec-00_002780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LN52_ECTSI4.770e-184100.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JN14_9PHAE8.960e-9797.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNH5_9PHAE5.960e-6894.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2938108..2939988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length744
Hectar predicted targeting categoryother localisation
Gene idEc-00_002780.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002780Ec-00_002780Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2938108..2939988 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002780.1.3Ec-00_002780.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2938108..2938437 -
Ec-00_002780.1.2Ec-00_002780.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2939270..2939428 -
Ec-00_002780.1.1Ec-00_002780.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2939734..2939988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002780.1CDS:Ec-00_002780.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2938108..2938437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002780.1Ec-00_002780.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2938108..2939988 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002780.1 ID=Ec-00_002780.1|Name=Ec-00_002780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=248bp
MRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVY
SEGASFWPFSMASRGDHSLPPSEDSLWANPWDWFRVAVPSLSRSDNDSPL
SYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAEDWSAHSWGVYFS
SQESPFSVWSARLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRG
ACLEQEWAFVFAVAAWWIAVLIGHAARKKNMFKPLNEAAGPAVADRW*
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spliced messenger RNA

>Ec-00_002780.1 ID=Ec-00_002780.1|Name=Ec-00_002780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=744bp|location=Sequence derived from alignment at chr_00:2938108..2939988- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCGGGTCGGGGAGAAAACGCTGCACCTGTGCCACGAGTCGGCGAC
GGGGAACGGCGGCAGGCTGTTCGAGTTCCTGCTCCCCGGGCCGGTGACGC
TGACCCGCTTCCTTCTCGCGGTGCCGGTCTGGCCCATGCTCCTCGTTTAC
TCGGAGGGGGCGTCCTTCTGGCCGTTCAGCATGGCGAGCAGGGGGGACCA
CTCCCTGCCGCCGTCGGAGGATTCGCTGTGGGCTAACCCTTGGGACTGGT
TCAGGGTCGCCGTGCCTTCGCTCTCTCGGTCGGACAACGACAGCCCGCTG
AGCTACGTGTACTGGGCGATCGTACCGCACCTGCTGTGGACCCTCGTTTC
CGCGGTTTGGGTAGGCCTCCTCGGCGCCGCCAATCTGGTCTGCTGGTACT
TCGGGCACGCAGAGGACTGGTCGGCGCACTCGTGGGGCGTGTACTTCTCG
AGCCAGGAGTCACCCTTCAGCGTCTGGTCGGCCCGGCTGCAGTCGGCGCT
GGGGATGGGCTTCACCGCGTGGGCCGCCAGGGAGTTCCGACGGCTGCTGG
CTTTCTCGGCGGCGCTGGCGGCGGTGGTGGTCCAGGGGTACCGGCGGGGC
GCCTGCCTGGAGCAGGAGTGGGCGTTCGTGTTCGCCGTGGCCGCGTGGTG
GATCGCCGTGCTCATCGGCCACGCCGCCCGGAAGAAGAACATGTTCAAGC
CGCTCAACGAGGCCGCCGGCCCCGCCGTGGCGGACCGCTGGTGA
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protein sequence of Ec-00_002780.1

>Ec-00_002780.1 ID=Ec-00_002780.1|Name=Ec-00_002780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=248bp
MRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVY
SEGASFWPFSMASRGDHSLPPSEDSLWANPWDWFRVAVPSLSRSDNDSPL
SYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAEDWSAHSWGVYFS
SQESPFSVWSARLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRG
ACLEQEWAFVFAVAAWWIAVLIGHAARKKNMFKPLNEAAGPAVADRW*
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mRNA from alignment at chr_00:2938108..2939988-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002780.1 ID=Ec-00_002780.1|Name=Ec-00_002780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1881bp|location=Sequence derived from alignment at chr_00:2938108..2939988- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGGCGGGTCGGGGAGAAAACGCTGCACCTGTGCCACGAGTCGGCGAC
GGGGAACGGCGGCAGGCTGTTCGAGTTCCTGCTCCCCGGGCCGGTGACGC
TGACCCGCTTCCTTCTCGCGGTGCCGGTCTGGCCCATGCTCCTCGTTTAC
TCGGAGGGGGCGTCCTTCTGGCCGTTCAGCATGGCGAGCAGGGGGGACCA
CTCCCTGCCGCCGTCGGAGGATTCGCTGTGGGCTAACCCTTGGGACTGGT
TCAGGGTGAGCGCGAGACCCAAAAAAAATGGAAACGTGCTTACCTTTCTT
TTTTTACGATGCATCGCCGGGGCGGGTGCTGCTGCTGCTGCGGAGCGGGT
ATCGTACCGGGGGTTGTTGGTCTTCTTCTGGCCGTGGTTGTGCTCTGTCG
CTCGCCGTTTCTCGACGGATCACTGCTGTCACACGAAGGGTCCGATTTTT
TGTTTTTTGTGCGTGCGGGCCATCGGTTTGGTTGTGGCGACCGACCTTCT
GGGTTACACCCTCAAGTACTGAAAAACAAAAAATCCTGTCTGTTGTCCCC
CCCTGTGCAGGTCGCCGTGCCTTCGCTCTCTCGGTCGGACAACGACAGCC
CGCTGAGCTACGTGTACTGGGCGATCGTACCGCACCTGCTGTGGACCCTC
GTTTCCGCGGTTTGGGTAGGCCTCCTCGGCGCCGCCAATCTGGTCTGCTG
GTACTTCGGGCACGCAGAGGTATGACGTGGCTTATCCTTATAGCACCGCG
AAGCGTGGATCTAATAGTACGTCTTTTTCTTGCACGATGCGGAGACGTGG
TGTAGCGCTGAGCGTACAAGAACTGAAGACCGCACGCAGCCGGAGCCCTA
TGGAGGTTTAGCTCAGCGGCAGGACGAGTCCCAATCAGTCTGCTTGCAAG
GTGCTGCGATTCTTTCTCTTGGCGAGTACACTCCCATGGATGCCCAGTTT
AAGCCCCGACTGCGGCAGCTGCTTCGAGATCGTACGCACCAACGCGCGCG
CCAGGGGCACGCTTTGCTCCTCGATGCAAGCCCGTGTTTTCGCAAGCGAG
CGTGTCGCCCTCGTTTGCGGCGGGGGCGGGCGGGCCGCGGGGTATTGCTG
CGCCTTCTTTGCAAAAGGCTAGGTTCATCGGGGGCAAAAGAATGAACGTA
GTAGTCCCGGCGCCGTTGGCGTGGCAAAAAAAGGTGGCGAAAGTTCCCCC
CGTGTTCAGGCGAGGTGGCCGAGTTCGTGCGATACAAGCAGTTAGGGCCC
GCACTTACCAACTTGGCGGAGGGGAAATTGATACAGACTCGAAAAACTGT
GAAGTATCTAAGGATGTGAGCAACTTTGGTGAGCTCGGATAAGAACCCCT
ACACTAGCTAATCTACAGCAGTAGTCTATTCCGCGGCCAATCGTTGCACA
ATCCTGAAAAGGAACTATATAAGAACCCGCAGGCCCGGCCACAACCAGAG
GTGATTCCGCTGGCTCTTCGGGATCGGGGCCCCAATTGCCAGAGCACGTC
CGTCCGCCCCTGTCTCCCCCCGAAAAAATACCCGTGCAAACCAAACCGCA
GGACTGGTCGGCGCACTCGTGGGGCGTGTACTTCTCGAGCCAGGAGTCAC
CCTTCAGCGTCTGGTCGGCCCGGCTGCAGTCGGCGCTGGGGATGGGCTTC
ACCGCGTGGGCCGCCAGGGAGTTCCGACGGCTGCTGGCTTTCTCGGCGGC
GCTGGCGGCGGTGGTGGTCCAGGGGTACCGGCGGGGCGCCTGCCTGGAGC
AGGAGTGGGCGTTCGTGTTCGCCGTGGCCGCGTGGTGGATCGCCGTGCTC
ATCGGCCACGCCGCCCGGAAGAAGAACATGTTCAAGCCGCTCAACGAGGC
CGCCGGCCCCGCCGTGGCGGACCGCTGGTGA
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Coding sequence (CDS) from alignment at chr_00:2938108..2939988-

>Ec-00_002780.1 ID=Ec-00_002780.1|Name=Ec-00_002780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=744bp|location=Sequence derived from alignment at chr_00:2938108..2939988- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGGCGGGTCGGGGAGAAAACGCTGCACCTGTGCCACGAGTCGGCGAC
GGGGAACGGCGGCAGGCTGTTCGAGTTCCTGCTCCCCGGGCCGGTGACGC
TGACCCGCTTCCTTCTCGCGGTGCCGGTCTGGCCCATGCTCCTCGTTTAC
TCGGAGGGGGCGTCCTTCTGGCCGTTCAGCATGGCGAGCAGGGGGGACCA
CTCCCTGCCGCCGTCGGAGGATTCGCTGTGGGCTAACCCTTGGGACTGGT
TCAGGGTCGCCGTGCCTTCGCTCTCTCGGTCGGACAACGACAGCCCGCTG
AGCTACGTGTACTGGGCGATCGTACCGCACCTGCTGTGGACCCTCGTTTC
CGCGGTTTGGGTAGGCCTCCTCGGCGCCGCCAATCTGGTCTGCTGGTACT
TCGGGCACGCAGAGGACTGGTCGGCGCACTCGTGGGGCGTGTACTTCTCG
AGCCAGGAGTCACCCTTCAGCGTCTGGTCGGCCCGGCTGCAGTCGGCGCT
GGGGATGGGCTTCACCGCGTGGGCCGCCAGGGAGTTCCGACGGCTGCTGG
CTTTCTCGGCGGCGCTGGCGGCGGTGGTGGTCCAGGGGTACCGGCGGGGC
GCCTGCCTGGAGCAGGAGTGGGCGTTCGTGTTCGCCGTGGCCGCGTGGTG
GATCGCCGTGCTCATCGGCCACGCCGCCCGGAAGAAGAACATGTTCAAGC
CGCTCAACGAGGCCGCCGGCCCCGCCGTGGCGGACCGCTGGTGA
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Synonyms
The feature 'Ec-00_002780.1' has the following synonyms
Synonym
Esi1654_0001
Esi_1654_0001