Ec-00_002730.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002730.1
Unique NameEc-00_002730.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length191
Homology
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BLAST of Ec-00_002730.1 vs. uniprot
Match: D7G7A9_ECTSI (Cation efflux protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A9_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 5.630e-95
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1 
Query:    1 MGLHRDISRAASATAAAAGEHGHSRGAGLRQRDEEADGGDEGGRXXXXXXXXXXXXXPLFHGGHGHDDHNHGPAQDGLLNINHSAAGGAGRASSLAVGDTFSSSHGGHSXXXXXXXXXXXXXXXVDMATLKKRPTLIRLFLASMCVLAVPLWRRSSRLEWAALGGVSMFLAAVDMSKFAISKLRVQVGQL 570
            MGLHRDISRAASATAAAAGEHGHSRGAGLRQRDEEADGGDEGGRXXXXXXXXXXXXXPLFHGGHGHDDHNHGPAQDGLLNINHSAAGGAGRASSLAVGDTFSSSHGGHSXXXXXXXXXXXXXXXVDMATLKKRPTLIRLFLASMCVLAVPLWRRSSRLEWAALGGVSMFLAAVDMSKFAISKLRVQVGQL
Sbjct:    1 MGLHRDISRAASATAAAAGEHGHSRGAGLRQRDEEADGGDEGGRXXXXXXXXXXXXXPLFHGGHGHDDHNHGPAQDGLLNINHSAAGGAGRASSLAVGDTFSSSHGGHSXXXXXXXXXXXXXXXVDMATLKKRPTLIRLFLASMCVLAVPLWRRSSRLEWAALGGVSMFLAAVDMSKFAISKLRVQVGQL 190
The following BLAST results are available for this feature:
BLAST of Ec-00_002730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7A9_ECTSI5.630e-95100.00Cation efflux protein n=2 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2910749..2911655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.5
Seed ortholog evalue6.9e-80
Seed eggNOG ortholog2880.D7G7A9
Length573
Hectar predicted targeting categoryother localisation
Gene idEc-00_002730.1
EggNOG free text desc.cation transmembrane transporter activity
EggNOG OGsCOG0053@1,KOG1485@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002730Ec-00_002730Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2910749..2911655 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002730.1.2Ec-00_002730.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2910749..2910908 -
Ec-00_002730.1.1Ec-00_002730.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2911243..2911655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002730.1CDS:Ec-00_002730.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2910749..2910908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002730.1Ec-00_002730.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2910749..2911655 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002730.1 ID=Ec-00_002730.1|Name=Ec-00_002730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=191bp
MGLHRDISRAASATAAAAGEHGHSRGAGLRQRDEEADGGDEGGRYFRRLR
RRRRGGGPLFHGGHGHDDHNHGPAQDGLLNINHSAAGGAGRASSLAVGDT
FSSSHGGHSHGGGMGHSHSHAHFHVDMATLKKRPTLIRLFLASMCVLAVP
LWRRSSRLEWAALGGVSMFLAAVDMSKFAISKLRVQVGQL*
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spliced messenger RNA

>Ec-00_002730.1 ID=Ec-00_002730.1|Name=Ec-00_002730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=573bp|location=Sequence derived from alignment at chr_00:2910749..2911655- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCTCCATCGCGATATCTCGCGGGCGGCGTCGGCGACAGCAGCGGC
GGCGGGGGAACACGGGCACAGCCGAGGCGCGGGGCTCCGGCAGCGAGACG
AAGAGGCAGACGGCGGAGACGAAGGCGGCCGCTATTTCCGGCGGCTCCGG
CGCCGGCGGCGCGGCGGAGGGCCTCTCTTCCACGGGGGCCACGGGCACGA
CGACCACAACCACGGACCTGCCCAAGACGGGCTGCTCAACATCAACCACA
GCGCGGCAGGCGGCGCGGGGAGAGCCTCTTCTCTCGCCGTTGGAGACACG
TTTTCATCTTCCCACGGGGGGCACTCGCACGGCGGCGGGATGGGCCACAG
CCATAGCCACGCCCACTTCCACGTCGACATGGCCACGCTCAAGAAACGGC
CAACCCTCATCAGGCTGTTCTTGGCTTCGATGTGCGTTCTCGCGGTTCCG
CTCTGGCGGCGCAGCAGTCGCCTGGAGTGGGCGGCCCTGGGAGGGGTCTC
GATGTTCTTGGCCGCCGTGGACATGAGCAAGTTCGCCATCAGCAAGCTGA
GGGTGCAAGTCGGGCAGCTGTGA
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protein sequence of Ec-00_002730.1

>Ec-00_002730.1 ID=Ec-00_002730.1|Name=Ec-00_002730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=191bp
MGLHRDISRAASATAAAAGEHGHSRGAGLRQRDEEADGGDEGGRYFRRLR
RRRRGGGPLFHGGHGHDDHNHGPAQDGLLNINHSAAGGAGRASSLAVGDT
FSSSHGGHSHGGGMGHSHSHAHFHVDMATLKKRPTLIRLFLASMCVLAVP
LWRRSSRLEWAALGGVSMFLAAVDMSKFAISKLRVQVGQL*
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mRNA from alignment at chr_00:2910749..2911655-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002730.1 ID=Ec-00_002730.1|Name=Ec-00_002730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=907bp|location=Sequence derived from alignment at chr_00:2910749..2911655- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCCTCCATCGCGATATCTCGCGGGCGGCGTCGGCGACAGCAGCGGC
GGCGGGGGAACACGGGCACAGCCGAGGCGCGGGGCTCCGGCAGCGAGACG
AAGAGGCAGACGGCGGAGACGAAGGCGGCCGCTATTTCCGGCGGCTCCGG
CGCCGGCGGCGCGGCGGAGGGCCTCTCTTCCACGGGGGCCACGGGCACGA
CGACCACAACCACGGACCTGCCCAAGACGGGCTGCTCAACATCAACCACA
GCGCGGCAGGCGGCGCGGGGAGAGCCTCTTCTCTCGCCGTTGGAGACACG
TTTTCATCTTCCCACGGGGGGCACTCGCACGGCGGCGGGATGGGCCACAG
CCATAGCCACGCCCACTTCCACGTCGACATGGCCACGCTCAAGAAACGGC
CAACCCTCATCAGGCACGTACGCGTTCGGGATGATGGTGGTGGTGGTGGG
GGAGCCCAAGGGTAATCTCGCCCGCGGTGGTTTTTTACTTTCGCGTGCTG
AAAGCTGGCGTTGTTCTTTGTGTTGCATGATGCTTCCGCACTTGTGATCG
CCGATTCGATTCCGCATCTCCACCCGATATTTGTAAGTAGATTACGTGCG
TTCAACAAGACTACCCCGTTATTACCTCAGTCGAATATTCTTGTACATAC
GATGCCGCAGCAAGGAGAATTAACGGAGGATCCACCCGTGACCCACACGC
GTGCCGTAACGTGTGTATGAACTATGTTTTTTTTTATCTCCCCGCAGGCT
GTTCTTGGCTTCGATGTGCGTTCTCGCGGTTCCGCTCTGGCGGCGCAGCA
GTCGCCTGGAGTGGGCGGCCCTGGGAGGGGTCTCGATGTTCTTGGCCGCC
GTGGACATGAGCAAGTTCGCCATCAGCAAGCTGAGGGTGCAAGTCGGGCA
GCTGTGA
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Coding sequence (CDS) from alignment at chr_00:2910749..2911655-

>Ec-00_002730.1 ID=Ec-00_002730.1|Name=Ec-00_002730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=573bp|location=Sequence derived from alignment at chr_00:2910749..2911655- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCCTCCATCGCGATATCTCGCGGGCGGCGTCGGCGACAGCAGCGGC
GGCGGGGGAACACGGGCACAGCCGAGGCGCGGGGCTCCGGCAGCGAGACG
AAGAGGCAGACGGCGGAGACGAAGGCGGCCGCTATTTCCGGCGGCTCCGG
CGCCGGCGGCGCGGCGGAGGGCCTCTCTTCCACGGGGGCCACGGGCACGA
CGACCACAACCACGGACCTGCCCAAGACGGGCTGCTCAACATCAACCACA
GCGCGGCAGGCGGCGCGGGGAGAGCCTCTTCTCTCGCCGTTGGAGACACG
TTTTCATCTTCCCACGGGGGGCACTCGCACGGCGGCGGGATGGGCCACAG
CCATAGCCACGCCCACTTCCACGTCGACATGGCCACGCTCAAGAAACGGC
CAACCCTCATCAGGCTGTTCTTGGCTTCGATGTGCGTTCTCGCGGTTCCG
CTCTGGCGGCGCAGCAGTCGCCTGGAGTGGGCGGCCCTGGGAGGGGTCTC
GATGTTCTTGGCCGCCGTGGACATGAGCAAGTTCGCCATCAGCAAGCTGA
GGGTGCAAGTCGGGCAGCTGTGA
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Synonyms
The feature 'Ec-00_002730.1' has the following synonyms
Synonym
Esi1636_0001
Esi_1636_0001