Ec-00_002690.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002690.1
Unique NameEc-00_002690.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length124
Homology
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BLAST of Ec-00_002690.1 vs. uniprot
Match: D7FLX0_ECTSI (Guanylate cyclase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLX0_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 2.480e-78
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 
Query:    1 MAIPFSLTQRRSAVNADNAARGINLGLRLLRQGVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKEAMRMKVCCWRVYVFRIGTKRLMQRQ 369
            MAIPFSLTQRRSAVNADNAARGINLGLRLLRQGVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKEAMRMKVCCWRVYVFRIGTKRLMQRQ
Sbjct:    1 MAIPFSLTQRRSAVNADNAARGINLGLRLLRQGVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKEAMRMKVCCWRVYVFRIGTKRLMQRQ 123
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BLAST of Ec-00_002690.1 vs. uniprot
Match: D8LJ63_ECTSI (Guanylate cyclase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ63_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.580e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:   49 DNAARGINLGLRLLRQGVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKEAMRMKV 312
            DNAARGINLGLRLLRQGVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKEAMRMKV
Sbjct:  617 DNAARGINLGLRLLRQGVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKEAMRMKV 704
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BLAST of Ec-00_002690.1 vs. uniprot
Match: A0A6G0NM85_9STRA (Guanylate cyclase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0NM85_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.950e-17
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:   49 DNAARGINLGLRLLRQGVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKEAMRMKV 312
            +N  RGI     +L+ GV+A IGVTTGS F G +G+ +R EYA VGD++N++ARLM  AP   + CD  T KE +D+  F++A+ MKV
Sbjct:  508 NNCFRGIKFASYVLKSGVKASIGVTTGSVFCGSVGSNARAEYAVVGDSINLAARLMAAAPVGEIYCDHRTHKETKDSVHFRDAIEMKV 595
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BLAST of Ec-00_002690.1 vs. uniprot
Match: U6G324_9EIME (Adenylate cyclase, putative n=1 Tax=Eimeria praecox TaxID=51316 RepID=U6G324_9EIME)

HSP 1 Score: 69.7 bits (169), Expect = 2.300e-11
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:   49 DNAARGINLGLRLLRQ----GVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKEAMRMKV 312
            D+  R I  GLR++      G+ A IG+T+G  + G +G   R+EY A+GD VN+SARLM KA    + CDA+T + A+ A  FK+   MKV
Sbjct:  373 DDPVRAIMAGLRVIDGMKMFGLDAGIGITSGRVWCGTVGNDLRKEYTALGDFVNLSARLMAKAGPREIYCDANTHRSAQHAMEFKQLPSMKV 464
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BLAST of Ec-00_002690.1 vs. uniprot
Match: B6AD61_CRYMR (Uncharacterized protein n=2 Tax=Cryptosporidium TaxID=5806 RepID=B6AD61_CRYMR)

HSP 1 Score: 65.9 bits (159), Expect = 5.100e-10
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:   49 DNAARGINLGLRLLRQ----GVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKE 294
            D+  R +  GLR+L      G+ + IG+ TG  + G +G A R+EY A+GD VN+SARLM KA  N +LCD +T         F E
Sbjct:  477 DDPLRAVFSGLRILDSIRLMGLSSSIGIGTGRVWIGTVGCAIRKEYTALGDTVNLSARLMAKASENEILCDENTYNACHHVMQFNE 562
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BLAST of Ec-00_002690.1 vs. uniprot
Match: A0A812SW04_SYMMI (ADCY10 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812SW04_SYMMI)

HSP 1 Score: 65.5 bits (158), Expect = 6.900e-10
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   40 VNADNAARGI----NLGLRLLRQGVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKEAMRMKV 312
            V+ D+A R +    ++    ++ G+ A+ GV+TG A+ GV G+A R EY  +GDAVN+SARLM  AP N +L D  T        +F++   +KV
Sbjct:  693 VHTDDATRAVLSCFDIVRAFIKLGLVARCGVSTGRAYCGVCGSAERMEYTVLGDAVNLSARLMANAPANGILVDEETRTRCTVELNFEDLKPIKV 787
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BLAST of Ec-00_002690.1 vs. uniprot
Match: A0A813CKE4_9DINO (DTX46 protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A813CKE4_9DINO)

HSP 1 Score: 65.5 bits (158), Expect = 6.970e-10
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   40 VNADNAARGI----NLGLRLLRQGVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKEAMRMKV 312
            V+ D+A R +    ++    ++ G+ A+ GV+TG A+ GV G+A R EY  +GDAVN+SARLM  AP N +L D  T        +F++   +KV
Sbjct:  603 VHTDDATRAVLSCFDIVRAFIKLGLVARCGVSTGRAYCGVCGSAERMEYTVLGDAVNLSARLMANAPANGILVDEETRTRCTVELNFEDLKPIKV 697
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BLAST of Ec-00_002690.1 vs. uniprot
Match: A0A1Q9EEP2_SYMMI (NADP-dependent malic enzyme, chloroplastic n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EEP2_SYMMI)

HSP 1 Score: 65.5 bits (158), Expect = 7.040e-10
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   40 VNADNAARGI----NLGLRLLRQGVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKEAMRMKV 312
            V+ D+A R +    ++    ++ G+ A+ GV+TG A+ GV G+A R EY  +GDAVN+SARLM  AP N +L D  T        +F++   +KV
Sbjct:  461 VHTDDATRAVLSCFDIVRAFIKLGLVARCGVSTGRAYCGVCGSAERMEYTVLGDAVNLSARLMANAPANGILVDEETRTRCTVELNFEDLKPIKV 555
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BLAST of Ec-00_002690.1 vs. uniprot
Match: A0A7S4LQ86_OXYMA (Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S4LQ86_OXYMA)

HSP 1 Score: 65.1 bits (157), Expect = 9.250e-10
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:   40 VNADNAARGINLGLRLLRQ----GVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDAST 258
            V+ D+A R       +LR     G++A+ GVTTG  F GV+G+ SRQEY  +GD VN+SARLM  A +N+VL D +T
Sbjct:  403 VHTDDALRATLSSFDMLRGVMGLGLEARFGVTTGRCFCGVVGSNSRQEYTCLGDTVNLSARLMASARKNSVLVDEAT 479
[Close]
BLAST of Ec-00_002690.1 vs. uniprot
Match: A0A1J4MD33_9CRYT (Uncharacterized protein n=1 Tax=Cryptosporidium ubiquitum TaxID=857276 RepID=A0A1J4MD33_9CRYT)

HSP 1 Score: 65.1 bits (157), Expect = 9.480e-10
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   49 DNAARGINLGLRLLRQ----GVQAKIGVTTGSAFAGVIGAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSF 288
            D+  R +  GLR+L      G+ + IG+ TG  + G +G   R+EY A+GD VN+SARLMG+A  N +LCD +T +    A  F
Sbjct:  497 DDPLRAVFAGLRILDSIRFMGLSSSIGIGTGRVWIGTVGCEIRKEYTALGDTVNLSARLMGRAGENEILCDLNTYEACNHAMQF 580
The following BLAST results are available for this feature:
BLAST of Ec-00_002690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLX0_ECTSI2.480e-78100.00Guanylate cyclase domain-containing protein n=1 Ta... [more]
D8LJ63_ECTSI1.580e-44100.00Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A6G0NM85_9STRA4.950e-1748.86Guanylate cyclase domain-containing protein n=4 Ta... [more]
U6G324_9EIME2.300e-1143.48Adenylate cyclase, putative n=1 Tax=Eimeria praeco... [more]
B6AD61_CRYMR5.100e-1041.86Uncharacterized protein n=2 Tax=Cryptosporidium Ta... [more]
A0A812SW04_SYMMI6.900e-1038.95ADCY10 protein n=3 Tax=Symbiodinium TaxID=2949 Rep... [more]
A0A813CKE4_9DINO6.970e-1038.95DTX46 protein n=2 Tax=unclassified Symbiodinium Ta... [more]
A0A1Q9EEP2_SYMMI7.040e-1038.95NADP-dependent malic enzyme, chloroplastic n=2 Tax... [more]
A0A7S4LQ86_OXYMA9.250e-1048.05Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID... [more]
A0A1J4MD33_9CRYT9.480e-1041.67Uncharacterized protein n=1 Tax=Cryptosporidium ub... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2875803..2877159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue2.5e-38
Seed eggNOG ortholog2880.D8LJ63
Length372
Hectar predicted targeting categoryother localisation
Gene idEc-00_002690.1
EggNOG free text desc.Adenylate cyclase
EggNOG OGs2QPPT@2759,COG2114@1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002690Ec-00_002690Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2875803..2877159 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002690.1.1Ec-00_002690.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2875803..2875850 +
Ec-00_002690.1.2Ec-00_002690.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2876113..2876215 +
Ec-00_002690.1.3Ec-00_002690.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2876939..2877159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002690.1CDS:Ec-00_002690.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2875803..2875850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002690.1Ec-00_002690.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2875803..2877159 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002690.1 ID=Ec-00_002690.1|Name=Ec-00_002690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=124bp
MAIPFSLTQRRSAVNADNAARGINLGLRLLRQGVQAKIGVTTGSAFAGVI
GAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKEAM
RMKVCCWRVYVFRIGTKRLMQRQ*
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spliced messenger RNA

>Ec-00_002690.1 ID=Ec-00_002690.1|Name=Ec-00_002690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=372bp|location=Sequence derived from alignment at chr_00:2875803..2877159+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATACCGTTCAGTCTGACACAAAGGAGATCTGCGGTAAACGCAGA
TAACGCTGCTCGCGGTATCAATCTCGGGCTGAGGCTCCTACGTCAGGGAG
TGCAAGCGAAAATAGGGGTCACAACCGGATCTGCATTCGCCGGAGTCATT
GGGGCTGCCTCTCGACAAGAGTACGCTGCGGTGGGGGACGCGGTGAACAT
GTCTGCGAGGCTCATGGGGAAAGCGCCGAGGAACACGGTTCTGTGCGATG
CGAGCACGGCCAAAGAGGCGGAGGACGCATTTTCTTTCAAGGAAGCCATG
CGAATGAAGGTTTGTTGTTGGCGTGTATATGTGTTTCGAATTGGTACGAA
GAGATTGATGCAGCGGCAGTGA
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protein sequence of Ec-00_002690.1

>Ec-00_002690.1 ID=Ec-00_002690.1|Name=Ec-00_002690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=124bp
MAIPFSLTQRRSAVNADNAARGINLGLRLLRQGVQAKIGVTTGSAFAGVI
GAASRQEYAAVGDAVNMSARLMGKAPRNTVLCDASTAKEAEDAFSFKEAM
RMKVCCWRVYVFRIGTKRLMQRQ*
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mRNA from alignment at chr_00:2875803..2877159+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002690.1 ID=Ec-00_002690.1|Name=Ec-00_002690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1357bp|location=Sequence derived from alignment at chr_00:2875803..2877159+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCATACCGTTCAGTCTGACACAAAGGAGATCTGCGGTAAACGCAGC
CAGTTTTTGCCACCAGAGAGGTTCGGCAACCCGTTCCCTCGTTGATATGC
GAAGTCGAACTTTGATTGTCACGAGAACTTCTCTTGTTGTTAGTGTTACG
ACCGGCATACGTATGCACGTCGAAGTAGCATGAACACAACGCAATGATAA
AGGTCGTGTAGCGAATACTTTCAATAACCAAAAAAGTGTCTCAAAATATA
TTTTGTATGCCTTTGAAAACGGTATTCGTTGTCCGCCTGTCGTTTACCCC
CTCCATATAGGATAACGCTGCTCGCGGTATCAATCTCGGGCTGAGGCTCC
TACGTCAGGGAGTGCAAGCGAAAATAGGGGTCACAACCGGATCTGCATTC
GCCGGAGTCATTGGTGAGTTGACAATTATGCAAGACATCCCTGTCGAGTG
ATGTTGCAGGTAGTGAAACCGTTCTCTGGCCAGCTTCGGTATTCCGAATT
CTTCTTCGCAATCTGCCATGGAACTAGTCAGAGACGAAGATGACACAAGA
CACACCAAAGCCCCCCTCATGGATGGATAACCTATTTTCCTGGGCCGATT
TTTCCATAGCGGGACAGGTACCGGTGGTCCCTATCTTAGCGACGTTGGGG
GACACTTCACGAAACTCTTGCTGAAAACATTTTGCCGTTCGATCGCGTAG
TCATATTTTCAGGGGAGATAATCCCGATGTCAACTTCAAGGGAAACCCCG
AGTGGGGGATGGTAAAGTTGCACTTCACCAGCGGCGGTATCAATAGATAG
CAATGGTGATCGGGGTAGCCTCTTTTCGTTTCAGAAACGCCAAATAAATC
AATGTCGAGAAAAGTACCAAAACCTGGGAGAGGAGTGGAGGAGGACGTAC
CTCTTTTGCGCACTACTGTAGCACTCCATGACCCATTTGGGCCTTGGAAA
GCAACGAAGCACCCGCCCCTCCCGGCCTCTCCCACATTAAACTTGACTTG
TTTGGAAAAAATAGAGGTGTAAAGAGAGCACCACCCCGCTCCCGACGAAA
ACGGCAACCAACATGTATGTTCCCCCGCCCTGAATCCTCCCAAACCATTC
AGCACATGCCCATCTCCCCACCTTGTATCAAACAAGGGGCTGCCTCTCGA
CAAGAGTACGCTGCGGTGGGGGACGCGGTGAACATGTCTGCGAGGCTCAT
GGGGAAAGCGCCGAGGAACACGGTTCTGTGCGATGCGAGCACGGCCAAAG
AGGCGGAGGACGCATTTTCTTTCAAGGAAGCCATGCGAATGAAGGTTTGT
TGTTGGCGTGTATATGTGTTTCGAATTGGTACGAAGAGATTGATGCAGCG
GCAGTGA
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Coding sequence (CDS) from alignment at chr_00:2875803..2877159+

>Ec-00_002690.1 ID=Ec-00_002690.1|Name=Ec-00_002690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=372bp|location=Sequence derived from alignment at chr_00:2875803..2877159+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCATACCGTTCAGTCTGACACAAAGGAGATCTGCGGTAAACGCAGA
TAACGCTGCTCGCGGTATCAATCTCGGGCTGAGGCTCCTACGTCAGGGAG
TGCAAGCGAAAATAGGGGTCACAACCGGATCTGCATTCGCCGGAGTCATT
GGGGCTGCCTCTCGACAAGAGTACGCTGCGGTGGGGGACGCGGTGAACAT
GTCTGCGAGGCTCATGGGGAAAGCGCCGAGGAACACGGTTCTGTGCGATG
CGAGCACGGCCAAAGAGGCGGAGGACGCATTTTCTTTCAAGGAAGCCATG
CGAATGAAGGTTTGTTGTTGGCGTGTATATGTGTTTCGAATTGGTACGAA
GAGATTGATGCAGCGGCAGTGA
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Synonyms
The feature 'Ec-00_002690.1' has the following synonyms
Synonym
Esi1612_0001
Esi_1612_0001