Ec-00_002680.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002680.1
Unique NameEc-00_002680.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length299
Homology
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BLAST of Ec-00_002680.1 vs. uniprot
Match: A0A6H5KE51_9PHAE (Protein kinase domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KE51_9PHAE)

HSP 1 Score: 431 bits (1107), Expect = 1.130e-141
Identity = 235/264 (89.02%), Postives = 242/264 (91.67%), Query Frame = 1 
Query:  118 SDAKKRPRSGSGSLLSGSAAGGGRGLMPAAAMFDLYADVPPPEEKPPASVETRHEGKGVA-----EDVKLSYPNASSGKGSAATLLAASTEDRGDPGSAPVDMKKATVRPELAPKTSAGQTAGGGPATEVGAVGTSPAGRGAKGAAVDVSLALGKLRPHLQGSRTGSKKFPRACGLLTDLLCAKLGQENEEIFFGVISDTVAYRGGCANNRDTAAGEHLSLLRANGVVGEAIRRLVAAASSRSSCFSGQRREAVESWEKEMAKC 894
            S AKKRPRSGSGSLLSGSAAGGGRGLMPAAAMFDLYADVPPPEE PPASVETRHEGKGVA     EDVKLSYPNAS GKGSAATLLAASTEDRGDP SAPVDMKK  VRPELA +TSAGQ AGGGPATEVGAVGTSPAGRGAKGA VDVSLALGKLRPHLQGSRTGS+KFPRACGLLTDLLCAKLGQENEEIFFGVISDTVAYRGGC  NRD +AGEHL+LL+ N V GEAIRRLV AASSRSSCFSGQRREAVESW +E+AKC
Sbjct:  652 SGAKKRPRSGSGSLLSGSAAGGGRGLMPAAAMFDLYADVPPPEENPPASVETRHEGKGVADVSGAEDVKLSYPNASPGKGSAATLLAASTEDRGDPVSAPVDMKKVAVRPELALETSAGQMAGGGPATEVGAVGTSPAGRGAKGATVDVSLALGKLRPHLQGSRTGSRKFPRACGLLTDLLCAKLGQENEEIFFGVISDTVAYRGGCGENRDVSAGEHLALLKGNDVAGEAIRRLVTAASSRSSCFSGQRREAVESWAEEIAKC 915
The following BLAST results are available for this feature:
BLAST of Ec-00_002680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KE51_9PHAE1.130e-14189.02Protein kinase domain-containing protein n=3 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2861413..2862309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score557.8
Seed ortholog evalue3.2e-156
Seed eggNOG ortholog2880.D7FVL2
Length897
KEGG koko:K08959
KEGG Pathwayko04340,ko04390,ko04540,ko04710,map04340,map04390,map04540,map04710
Hectar predicted targeting categoryother localisation
Gene idEc-00_002680.1
EggNOG free text desc.protein kinase activity
EggNOG OGsKOG1164@1,KOG1164@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002680Ec-00_002680Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2861413..2862309 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002680.1.1Ec-00_002680.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2861413..2862309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002680.1CDS:Ec-00_002680.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2861413..2862309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002680.1Ec-00_002680.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2861413..2862309 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002680.1 ID=Ec-00_002680.1|Name=Ec-00_002680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=299bp
MVLGGAAGKRTLDASATSSTHQRGSAAGGDVGSTAGVTASDAKKRPRSGS
GSLLSGSAAGGGRGLMPAAAMFDLYADVPPPEEKPPASVETRHEGKGVAE
DVKLSYPNASSGKGSAATLLAASTEDRGDPGSAPVDMKKATVRPELAPKT
SAGQTAGGGPATEVGAVGTSPAGRGAKGAAVDVSLALGKLRPHLQGSRTG
SKKFPRACGLLTDLLCAKLGQENEEIFFGVISDTVAYRGGCANNRDTAAG
EHLSLLRANGVVGEAIRRLVAAASSRSSCFSGQRREAVESWEKEMAKC*
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spliced messenger RNA

>Ec-00_002680.1 ID=Ec-00_002680.1|Name=Ec-00_002680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=897bp|location=Sequence derived from alignment at chr_00:2861413..2862309+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTCGGCGGCGCGGCTGGCAAGAGGACGCTGGACGCATCCGCGAC
CAGTTCGACACATCAACGCGGTTCTGCCGCGGGAGGAGATGTGGGCAGTA
CAGCCGGGGTTACCGCGTCAGATGCGAAGAAGCGGCCTAGGAGTGGTTCT
GGTTCACTGCTGTCAGGGTCTGCTGCTGGCGGTGGCAGGGGGTTGATGCC
CGCGGCAGCAATGTTTGATCTGTACGCGGATGTGCCCCCGCCGGAAGAAA
AACCACCTGCCAGTGTCGAGACCCGCCACGAAGGAAAAGGGGTGGCCGAA
GATGTCAAACTGTCATATCCTAACGCTTCCTCGGGCAAGGGTAGTGCAGC
GACGCTACTGGCAGCGTCAACGGAAGACCGAGGGGACCCGGGGTCCGCTC
CCGTCGACATGAAGAAGGCTACCGTCAGACCAGAGCTAGCACCAAAGACG
AGTGCTGGGCAAACGGCAGGAGGAGGCCCGGCAACAGAGGTTGGAGCTGT
CGGGACTAGCCCGGCGGGTCGAGGTGCTAAGGGGGCGGCGGTGGATGTTT
CGTTGGCCCTCGGGAAGCTTCGGCCTCATCTTCAAGGGAGCCGTACCGGA
AGCAAGAAGTTCCCGCGCGCTTGCGGCTTGCTCACGGACCTCCTGTGCGC
CAAGCTTGGTCAAGAGAACGAGGAGATATTCTTCGGCGTTATCTCGGACA
CCGTGGCGTATCGCGGAGGTTGTGCCAATAATCGCGACACGGCTGCGGGG
GAGCACCTTTCGTTGCTGAGGGCAAATGGTGTCGTTGGGGAGGCCATCAG
ACGCCTGGTAGCTGCCGCGAGTTCTCGATCTTCGTGTTTTTCTGGGCAGC
GGCGAGAGGCGGTGGAGTCTTGGGAAAAAGAGATGGCGAAGTGTTGA
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protein sequence of Ec-00_002680.1

>Ec-00_002680.1 ID=Ec-00_002680.1|Name=Ec-00_002680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=299bp
MVLGGAAGKRTLDASATSSTHQRGSAAGGDVGSTAGVTASDAKKRPRSGS
GSLLSGSAAGGGRGLMPAAAMFDLYADVPPPEEKPPASVETRHEGKGVAE
DVKLSYPNASSGKGSAATLLAASTEDRGDPGSAPVDMKKATVRPELAPKT
SAGQTAGGGPATEVGAVGTSPAGRGAKGAAVDVSLALGKLRPHLQGSRTG
SKKFPRACGLLTDLLCAKLGQENEEIFFGVISDTVAYRGGCANNRDTAAG
EHLSLLRANGVVGEAIRRLVAAASSRSSCFSGQRREAVESWEKEMAKC*
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mRNA from alignment at chr_00:2861413..2862309+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002680.1 ID=Ec-00_002680.1|Name=Ec-00_002680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=897bp|location=Sequence derived from alignment at chr_00:2861413..2862309+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGCTCGGCGGCGCGGCTGGCAAGAGGACGCTGGACGCATCCGCGAC
CAGTTCGACACATCAACGCGGTTCTGCCGCGGGAGGAGATGTGGGCAGTA
CAGCCGGGGTTACCGCGTCAGATGCGAAGAAGCGGCCTAGGAGTGGTTCT
GGTTCACTGCTGTCAGGGTCTGCTGCTGGCGGTGGCAGGGGGTTGATGCC
CGCGGCAGCAATGTTTGATCTGTACGCGGATGTGCCCCCGCCGGAAGAAA
AACCACCTGCCAGTGTCGAGACCCGCCACGAAGGAAAAGGGGTGGCCGAA
GATGTCAAACTGTCATATCCTAACGCTTCCTCGGGCAAGGGTAGTGCAGC
GACGCTACTGGCAGCGTCAACGGAAGACCGAGGGGACCCGGGGTCCGCTC
CCGTCGACATGAAGAAGGCTACCGTCAGACCAGAGCTAGCACCAAAGACG
AGTGCTGGGCAAACGGCAGGAGGAGGCCCGGCAACAGAGGTTGGAGCTGT
CGGGACTAGCCCGGCGGGTCGAGGTGCTAAGGGGGCGGCGGTGGATGTTT
CGTTGGCCCTCGGGAAGCTTCGGCCTCATCTTCAAGGGAGCCGTACCGGA
AGCAAGAAGTTCCCGCGCGCTTGCGGCTTGCTCACGGACCTCCTGTGCGC
CAAGCTTGGTCAAGAGAACGAGGAGATATTCTTCGGCGTTATCTCGGACA
CCGTGGCGTATCGCGGAGGTTGTGCCAATAATCGCGACACGGCTGCGGGG
GAGCACCTTTCGTTGCTGAGGGCAAATGGTGTCGTTGGGGAGGCCATCAG
ACGCCTGGTAGCTGCCGCGAGTTCTCGATCTTCGTGTTTTTCTGGGCAGC
GGCGAGAGGCGGTGGAGTCTTGGGAAAAAGAGATGGCGAAGTGTTGA
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Coding sequence (CDS) from alignment at chr_00:2861413..2862309+

>Ec-00_002680.1 ID=Ec-00_002680.1|Name=Ec-00_002680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=897bp|location=Sequence derived from alignment at chr_00:2861413..2862309+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGCTCGGCGGCGCGGCTGGCAAGAGGACGCTGGACGCATCCGCGAC
CAGTTCGACACATCAACGCGGTTCTGCCGCGGGAGGAGATGTGGGCAGTA
CAGCCGGGGTTACCGCGTCAGATGCGAAGAAGCGGCCTAGGAGTGGTTCT
GGTTCACTGCTGTCAGGGTCTGCTGCTGGCGGTGGCAGGGGGTTGATGCC
CGCGGCAGCAATGTTTGATCTGTACGCGGATGTGCCCCCGCCGGAAGAAA
AACCACCTGCCAGTGTCGAGACCCGCCACGAAGGAAAAGGGGTGGCCGAA
GATGTCAAACTGTCATATCCTAACGCTTCCTCGGGCAAGGGTAGTGCAGC
GACGCTACTGGCAGCGTCAACGGAAGACCGAGGGGACCCGGGGTCCGCTC
CCGTCGACATGAAGAAGGCTACCGTCAGACCAGAGCTAGCACCAAAGACG
AGTGCTGGGCAAACGGCAGGAGGAGGCCCGGCAACAGAGGTTGGAGCTGT
CGGGACTAGCCCGGCGGGTCGAGGTGCTAAGGGGGCGGCGGTGGATGTTT
CGTTGGCCCTCGGGAAGCTTCGGCCTCATCTTCAAGGGAGCCGTACCGGA
AGCAAGAAGTTCCCGCGCGCTTGCGGCTTGCTCACGGACCTCCTGTGCGC
CAAGCTTGGTCAAGAGAACGAGGAGATATTCTTCGGCGTTATCTCGGACA
CCGTGGCGTATCGCGGAGGTTGTGCCAATAATCGCGACACGGCTGCGGGG
GAGCACCTTTCGTTGCTGAGGGCAAATGGTGTCGTTGGGGAGGCCATCAG
ACGCCTGGTAGCTGCCGCGAGTTCTCGATCTTCGTGTTTTTCTGGGCAGC
GGCGAGAGGCGGTGGAGTCTTGGGAAAAAGAGATGGCGAAGTGTTGA
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Synonyms
The feature 'Ec-00_002680.1' has the following synonyms
Synonym
Esi1604_0001
Esi_1604_0001