Ec-00_002640.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002640.1
Unique NameEc-00_002640.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length94
Homology
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BLAST of Ec-00_002640.1 vs. uniprot
Match: D7FLB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB7_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 9.800e-54
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 279
            MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG
Sbjct:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 93
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BLAST of Ec-00_002640.1 vs. uniprot
Match: A0A6H5KFP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP7_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 2.290e-48
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 279
            MSG AFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQA MLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG
Sbjct:  313 MSGTAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAGMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 405
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BLAST of Ec-00_002640.1 vs. uniprot
Match: A0A835ZK65_9STRA (HCO3 transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK65_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.450e-25
Identity = 58/92 (63.04%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAV 276
            MSGN FL+R KE+  D+ LL+  S +KKVG+ TA  YT+VQ  ML LLWTLKSF +TALFFPSVIGLL++VRL  LPK+F+   L ELD+AV
Sbjct:  322 MSGNEFLLRIKELCADQSLLKPNSSVKKVGYKTALGYTSVQLGMLGLLWTLKSFRQTALFFPSVIGLLVLVRLAVLPKLFSKDALDELDSAV 413
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BLAST of Ec-00_002640.1 vs. uniprot
Match: A0A836CJA6_9STRA (Bicarbonate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA6_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.900e-21
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAV 276
            M GN F  R  ++ +D KL+ S S +K VG GTA +YTAVQA ML LLWTLKSF +TAL FPSVIGLL+V+RL  LPK+F+ + L  LD  V
Sbjct:  423 MCGNGFFERITDLCMDPKLMGSGSVVKAVGRGTALRYTAVQALMLALLWTLKSFSQTALLFPSVIGLLVVMRLTVLPKLFSDRSLRLLDPPV 514
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BLAST of Ec-00_002640.1 vs. uniprot
Match: A0A6U4I2T6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4I2T6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.670e-19
Identity = 48/89 (53.93%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELD 267
            MSGN FL R KE+  D K L S++ +++VG+ T AKYTA+Q A L  LW++KSF  TALFFPSVIG+L+++R   LP++F  +DL  LD
Sbjct:  583 MSGNDFLYRIKELCKDSKFLESDAFVRQVGYKTTAKYTAIQVACLAGLWSVKSFNSTALFFPSVIGVLVLIRKFLLPRLFLREDLVVLD 671
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BLAST of Ec-00_002640.1 vs. uniprot
Match: A0A7R9UCL0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCL0_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 9.220e-18
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAA 273
            MSGN FL R KE+ +D+K L  +S I++VG     +YTA+Q   L  LW +KSF  TALFFPSVIGLL+++R   LP++F+ +DL  LD A
Sbjct:  415 MSGNDFLYRIKELAMDKKFLDEDSFIQRVGRSVVFRYTAIQVLCLMGLWAMKSFNSTALFFPSVIGLLVMIRKALLPRLFSKEDLRVLDRA 505
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BLAST of Ec-00_002640.1 vs. uniprot
Match: A0A0G4H159_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H159_VITBC)

HSP 1 Score: 87.8 bits (216), Expect = 8.510e-16
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAV 276
            M+GN FL R  + F DR+LL  ES  +++      KYTAVQ A L  L+TLKS   TALFFPSVIG L+V+R V LP++F+  +L  LDA V
Sbjct:  739 MTGNDFLYRIGDTFADRELLPFESKFRQLPRSVVIKYTAVQLACLAGLFTLKSVRSTALFFPSVIGALMVIRAVVLPRLFSRHELDTLDATV 830
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BLAST of Ec-00_002640.1 vs. uniprot
Match: A0A7S2F9D6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F9D6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.520e-15
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELD 267
            M+GN+FL R + +F+D + L   + ++ +G     KYT +Q   L +LW LKSF+ TALFFPSVIGLL+V+R  ALPK+F   +L+ LD
Sbjct:  300 MTGNSFLRRIQGLFLDMEKLPPTASVRLLGRYPVIKYTGIQMGCLAILWGLKSFKPTALFFPSVIGLLVVIRRFALPKLFNEDELAILD 388
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BLAST of Ec-00_002640.1 vs. uniprot
Match: W7TSJ0_9STRA (Anion exchanger family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSJ0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.170e-14
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELD 267
            M+GN FL R K  F D+ +L ++S  K +G  T  KYT++Q   L +LW LKS   T +FFPSVIGLLI+ R++ +P++F+  +++ LD
Sbjct:  577 MTGNTFLQRIKGAFFDKSMLAADSPFKILGRATVNKYTSIQMGCLAVLWCLKSNPATGMFFPSVIGLLILTRILVIPRLFSKGEIAVLD 665
[Close]
BLAST of Ec-00_002640.1 vs. uniprot
Match: A0A7S2YS88_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YS88_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.190e-14
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSEL 264
            MSGN FL R  EVFV+++ L     I ++G   +A +TA+Q A L+ LW  K    TA+FFPSVIG L+++R   LPK FT K+L+ L
Sbjct:  152 MSGNTFLERILEVFVEKRRLNPGHPILQIGRAKSAAFTALQIACLSGLWAFKQNNNTAIFFPSVIGFLMIIRTFILPKFFTEKELTAL 239
The following BLAST results are available for this feature:
BLAST of Ec-00_002640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLB7_ECTSI9.800e-54100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFP7_9PHAE2.290e-4897.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZK65_9STRA1.450e-2563.04HCO3 transporter family-domain-containing protein ... [more]
A0A836CJA6_9STRA5.900e-2158.70Bicarbonate transporter n=1 Tax=Tribonema minus Ta... [more]
A0A6U4I2T6_9STRA7.670e-1953.93Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UCL0_9STRA9.220e-1851.65Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4H159_VITBC8.510e-1652.17Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2F9D6_9STRA3.520e-1548.31Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
W7TSJ0_9STRA1.170e-1444.94Anion exchanger family n=2 Tax=Monodopsidaceae Tax... [more]
A0A7S2YS88_9STRA1.190e-1447.73Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2837657..2839402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog45157.CMR009CT
Length844
Hectar predicted targeting categoryother localisation
Gene idEc-00_002640.1
EggNOG free text desc.inorganic anion exchanger activity
EggNOG OGsKOG1172@1,KOG1172@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002640Ec-00_002640Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2837657..2839402 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002640.1.3Ec-00_002640.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2837657..2838251 -
Ec-00_002640.1.2Ec-00_002640.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2838854..2838979 -
Ec-00_002640.1.1Ec-00_002640.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2839280..2839402 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0026403UTR:Ec-00_002640.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 2837657..2838218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002640.1CDS:Ec-00_002640.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2838219..2838251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002640.1Ec-00_002640.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2838219..2839402 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002640.1 ID=Ec-00_002640.1|Name=Ec-00_002640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=94bp
MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWT
LKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG*
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spliced messenger RNA

>Ec-00_002640.1 ID=Ec-00_002640.1|Name=Ec-00_002640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=844bp|location=Sequence derived from alignment at chr_00:2837657..2839402- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGGAACGCTTTCTTGGTGAGGTGCAAGGAAGTCTTCGTTGACCG
GAAGCTGCTGCGGAGCGAGAGCGACATTAAGAAGGTCGGCTTCGGCACCG
CAGCCAAATACACCGCCGTCCAGGCGGCCATGCTTACCCTCCTGTGGACG
CTCAAGTCATTCGAACGGACGGCGCTGTTCTTCCCGTCCGTGATCGGACT
TCTCATCGTCGTCCGCCTCGTGGCGTTGCCTAAGATGTTCACCCCGAAGG
ACTTGTCGGAGCTGGATGCCGCAGTGGGATAGTCAAGCACGGCGCTCGGC
ACCGCGGCGGGGAAATGAAAAGCTCGGGGAAACTCCGTTCTCTCAACGGT
TGATTTCTCTGTTTGAAATTTCCTGCGTGCTGTAAGATTTCAGCACCTGT
CGGAGAGGATGCAAGGCCTTTCGTGCATGTTCTAGGCATGCCGACGAGGC
AGTTTTTGTTGAAGAGGATGTTGGGATGTAGTCGTGGTCATCCATGGCTA
TAGGCTGGAGGTAGAGAGAACAGGTTTTGTGGCACGCAATTCGCTGATTG
GCTTAAAAACTGCGGTGCAATATCAAAAACAGGCACGACCCAAGATCCTT
GGGCGACGGGTGGTGTCGTCCACGGTGGACTCTGGCATCTCTCAGAGGCC
CTAGACGTGGCTCATTGGGGGGGTTCGGTGGAAGTCGCGGGTGGGACATT
CCGCATTGAGGTGGCCTGATCTGATAGGGGTGTGGGGGTGGCAGTTGGTG
TTGTACATGTACTCGCCGGTGGAAGTCGTTGAGCGAAATGGCTCAGCAAC
AGCGTGTTAACAATAATTTTTATGATTTGTATGGAAGGTCGACG
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protein sequence of Ec-00_002640.1

>Ec-00_002640.1 ID=Ec-00_002640.1|Name=Ec-00_002640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=94bp
MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWT
LKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG*
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mRNA from alignment at chr_00:2837657..2839402-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002640.1 ID=Ec-00_002640.1|Name=Ec-00_002640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1746bp|location=Sequence derived from alignment at chr_00:2837657..2839402- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGCGGGAACGCTTTCTTGGTGAGGTGCAAGGAAGTCTTCGTTGACCG
GAAGCTGCTGCGGAGCGAGAGCGACATTAAGAAGGTCGGCTTCGGCACCG
CAGCCAAATACACCGCCGTCCAGGTACTTGCGATACGCGACGATTTTGCT
CCTTTTTTTTGCCGCGTATTTCTTGTTTTCGTCATGCCACTGCCGTTCTG
TTACTGCCATTGATCGTTTTTGCTGTTCGCACTTCGGGCCCCTTGACGAT
GGTGGTCGACCCACTTGTCAGAAAACATGCCCACACAAACATGAAGCGTC
GAGGTTTCCTCTGCAACCGTACTGGAAGAAAAACTTTGTCGGTCCCGATC
AACCCAGCCCTGTTTTTTTGGCTCCGTGCGTCCGCATCCGCGCGGTTGGC
GACATGACCGGTACCGGTACCAGGCGGCCATGCTTACCCTCCTGTGGACG
CTCAAGTCATTCGAACGGACGGCGCTGTTCTTCCCGTCCGTGATCGGACT
TCTCATCGTCGTCCGCCTCGTGGCGTTGCCTAAGATGTTCACCCCGAAGG
TGCGGCCACCGTAGCTACCCCTAACGCTGGACAGTTTGCCCCTTCGTCAG
CCCTTTCCATCACGATGAACCGATTTGTTTTTGTTCATCGCAGGCGTTCT
CTGAAGGTTGGACGCTACTTGACCCTGCCATTTGATGCGGTCCCAGAACG
GTTTCGTGTTTTTTTCGTGGAGAAGTGTCTATTTTTTCCCTTGGGGCGGC
TGTTTCGGCAATCTAGAGAGACGCGAGTGTGCAAGAGGCCCTCGCGAGTG
TTGCCTTCTGCACCGTTACTCAACGTATCCGACAGGTAATTCCGTGTCAT
TCCACTCCTAGACGTCCCCTTGGTGTCGCATTGTGTGACTGCTTCAACGG
CTTTCCCGACATCGAACACGATGCTTACCAGCACACGTTCTTTACATCGG
CCTGGGAGGCATGGTTATGTTTTGCGTCCCCCCCAACCTTATCTGCTGGC
GACGATCTGAACTGTTTTTTGAGGGGGGGGTTGGGTCATTTTCACCGATG
ACGGCCGAGCCCTACACTCACAACGGATGGCTCTCTGCCGCGCATGCATA
TCTGATGCTCTGTATCTTGCGCGTGCTCGCTGTCCCCGCTGTACTCGCTA
GGACTTGTCGGAGCTGGATGCCGCAGTGGGATAGTCAAGCACGGCGCTCG
GCACCGCGGCGGGGAAATGAAAAGCTCGGGGAAACTCCGTTCTCTCAACG
GTTGATTTCTCTGTTTGAAATTTCCTGCGTGCTGTAAGATTTCAGCACCT
GTCGGAGAGGATGCAAGGCCTTTCGTGCATGTTCTAGGCATGCCGACGAG
GCAGTTTTTGTTGAAGAGGATGTTGGGATGTAGTCGTGGTCATCCATGGC
TATAGGCTGGAGGTAGAGAGAACAGGTTTTGTGGCACGCAATTCGCTGAT
TGGCTTAAAAACTGCGGTGCAATATCAAAAACAGGCACGACCCAAGATCC
TTGGGCGACGGGTGGTGTCGTCCACGGTGGACTCTGGCATCTCTCAGAGG
CCCTAGACGTGGCTCATTGGGGGGGTTCGGTGGAAGTCGCGGGTGGGACA
TTCCGCATTGAGGTGGCCTGATCTGATAGGGGTGTGGGGGTGGCAGTTGG
TGTTGTACATGTACTCGCCGGTGGAAGTCGTTGAGCGAAATGGCTCAGCA
ACAGCGTGTTAACAATAATTTTTATGATTTGTATGGAAGGTCGACG
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Coding sequence (CDS) from alignment at chr_00:2837657..2839402-

>Ec-00_002640.1 ID=Ec-00_002640.1|Name=Ec-00_002640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=282bp|location=Sequence derived from alignment at chr_00:2837657..2839402- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGCGGGAACGCTTTCTTGGTGAGGTGCAAGGAAGTCTTCGTTGACCG
GAAGCTGCTGCGGAGCGAGAGCGACATTAAGAAGGTCGGCTTCGGCACCG
CAGCCAAATACACCGCCGTCCAGGCGGCCATGCTTACCCTCCTGTGGACG
CTCAAGTCATTCGAACGGACGGCGCTGTTCTTCCCGTCCGTGATCGGACT
TCTCATCGTCGTCCGCCTCGTGGCGTTGCCTAAGATGTTCACCCCGAAGG
ACTTGTCGGAGCTGGATGCCGCAGTGGGATAG
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Synonyms
The feature 'Ec-00_002640.1' has the following synonyms
Synonym
Esi1587_0001
Esi_1587_0001