Ec-00_002630.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002630.1
Unique NameEc-00_002630.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length108
Homology
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BLAST of Ec-00_002630.1 vs. uniprot
Match: D7FLB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB6_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 1.080e-69
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 MDVLMNALCLVMFVLMPRLVSSLLVLLLDWMACDVTAAAWQGQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLSSSPVKKV 321
            MDVLMNALCLVMFVLMPRLVSSLLVLLLDWMACDVTAAAWQGQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLSSSPVKKV
Sbjct:    1 MDVLMNALCLVMFVLMPRLVSSLLVLLLDWMACDVTAAAWQGQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLSSSPVKKV 107
[Close]
BLAST of Ec-00_002630.1 vs. uniprot
Match: D7G0R5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R5_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 4.770e-50
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 
Query:   91 MACDVTAAAWQGQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLSSSPVKKV 321
            MACDVTAAAWQGQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLSSSPVKKV
Sbjct:    1 MACDVTAAAWQGQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLSSSPVKKV 77
[Close]
BLAST of Ec-00_002630.1 vs. uniprot
Match: A0A6H5J6X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X7_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.040e-37
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:  124 GQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLSSSPVKKV 321
            GQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEA+ALYKRVCKRKGLQPLAHA SLS+SP+KK 
Sbjct:   70 GQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEAEALYKRVCKRKGLQPLAHAPSLSNSPIKKA 135
[Close]
BLAST of Ec-00_002630.1 vs. uniprot
Match: A0A7S2WN31_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WN31_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.140e-14
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  124 GQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQ-PLAHASSLSSSPVKK 318
            G  DR FYETL +Q+PESHMAQ+WCL +GV    EA  LYK+V KRKG    +   S  S+SP KK
Sbjct:   17 GFGDRVFYETLFRQRPESHMAQEWCLNYGVLHLDEAAKLYKKVLKRKGKSFNVVPTSKKSTSPTKK 82
[Close]
BLAST of Ec-00_002630.1 vs. uniprot
Match: A0A7S2MRJ6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MRJ6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.710e-12
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  124 GQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKG 267
            G ADR FYETLL+Q+PESHMAQ+WC++ GV  +  A  L+  +CKRKG
Sbjct:   34 GMADRVFYETLLEQRPESHMAQEWCVSFGVLPSERAQKLFVLICKRKG 81
[Close]
BLAST of Ec-00_002630.1 vs. uniprot
Match: A0A7S2RJE9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJE9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.280e-12
Identity = 29/62 (46.77%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:  124 GQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLSSSP 309
            G +DR FYE+LL+Q+P+SHMAQ+WC+ +GV  +  A+ L+ ++CKRKG +P+  A+     P
Sbjct:   51 GYSDRVFYESLLEQRPDSHMAQEWCVMYGVLSSEVAEKLWVQICKRKG-KPVPVAAKKEGKP 111
[Close]
BLAST of Ec-00_002630.1 vs. uniprot
Match: A0A812ZI75_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZI75_SYMMI)

HSP 1 Score: 66.6 bits (161), Expect = 9.810e-12
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  124 GQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLSSSPVKK 318
            G  DR FY+TL+ Q+P+S MAQ+WC+ HG     EAD +++ +CKRKG +         SSPVKK
Sbjct:   35 GSGDRVFYDTLIAQRPDSEMAQEWCVYHGTLEYEEADRIFRIICKRKGRE-----YESRSSPVKK 94
[Close]
BLAST of Ec-00_002630.1 vs. uniprot
Match: B8LC58_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC58_THAPS)

HSP 1 Score: 65.9 bits (159), Expect = 1.270e-11
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:  124 GQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLSSSP 309
            G  DR FYETLL+Q+P+S MAQ+WC+ +GV    EA   YK V KRKG +    ASS S +P
Sbjct:   21 GNGDRVFYETLLRQRPDSEMAQEWCVNYGVLSEEEAAKAYKAVVKRKGSKK---ASSTSPTP 79
[Close]
BLAST of Ec-00_002630.1 vs. uniprot
Match: A0A7S0BYE2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BYE2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.160e-11
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:  124 GQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLSSSPV 312
            G ADR FYETLL+Q+P S MAQ+WC+  GV    E+  LYK++ +RKG++    A S+SSS V
Sbjct:   25 GFADRVFYETLLRQRPGSMMAQEWCVNFGVLPRKESSKLYKKIMERKGMKR--SAPSVSSSSV 85
[Close]
BLAST of Ec-00_002630.1 vs. uniprot
Match: B7G3U0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G3U0_PHATC)

HSP 1 Score: 61.6 bits (148), Expect = 4.920e-10
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:  124 GQADRCFYETLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLSSSPVKKV 321
            G  DR FYETLL+Q+P+S MAQ+WC+++GV    EA+ L+K+V  RK    L   S+ ++SP +K 
Sbjct:   17 GFGDRVFYETLLRQRPDSIMAQEWCVSYGVLPHDEAERLHKKVTDRKRQMRLGGGSA-ATSPARKT 81
The following BLAST results are available for this feature:
BLAST of Ec-00_002630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLB6_ECTSI1.080e-69100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0R5_ECTSI4.770e-50100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6X7_9PHAE2.040e-3792.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WN31_9STRA8.140e-1456.06Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2MRJ6_9STRA1.710e-1260.42Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RJE9_9STRA8.280e-1246.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812ZI75_SYMMI9.810e-1247.69Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
B8LC58_THAPS1.270e-1153.23Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S0BYE2_9STRA5.160e-1152.38Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7G3U0_PHATC4.920e-1046.97Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2813514..2814494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog35128.Thaps8827
Length324
Hectar predicted targeting categorysignal peptide
Gene idEc-00_002630.1
EggNOG OGs2D0C9@1,2RRB4@2759,2XDR4@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002630Ec-00_002630Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2813514..2814494 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002630.1.3Ec-00_002630.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2813514..2813519 -
Ec-00_002630.1.2Ec-00_002630.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2813653..2813794 -
Ec-00_002630.1.1Ec-00_002630.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2814319..2814494 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002630.1CDS:Ec-00_002630.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2813514..2813519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002630.1Ec-00_002630.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2813514..2814494 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002630.1 ID=Ec-00_002630.1|Name=Ec-00_002630.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=108bp
MDVLMNALCLVMFVLMPRLVSSLLVLLLDWMACDVTAAAWQGQADRCFYE
TLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLS
SSPVKKV*
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spliced messenger RNA

>Ec-00_002630.1 ID=Ec-00_002630.1|Name=Ec-00_002630.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=324bp|location=Sequence derived from alignment at chr_00:2813514..2814494- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTCCTAATGAACGCTTTATGCCTCGTGATGTTTGTGCTGATGCC
TCGTCTCGTCTCTTCTCTTCTTGTGCTGCTGTTGGATTGGATGGCTTGTG
ACGTCACCGCGGCGGCCTGGCAGGGTCAGGCGGATCGCTGTTTCTACGAG
ACCCTGCTGAAACAAAAGCCAGAGAGTCACATGGCGCAGGACTGGTGTCT
GGCGCACGGGGTGTGCGGGGCGGCTGAAGCGGATGCTCTCTACAAGAGAG
TCTGCAAGAGGAAAGGGCTGCAACCGTTGGCCCACGCGTCGTCTCTATCC
AGCTCCCCCGTCAAAAAGGTGTAG
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protein sequence of Ec-00_002630.1

>Ec-00_002630.1 ID=Ec-00_002630.1|Name=Ec-00_002630.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=108bp
MDVLMNALCLVMFVLMPRLVSSLLVLLLDWMACDVTAAAWQGQADRCFYE
TLLKQKPESHMAQDWCLAHGVCGAAEADALYKRVCKRKGLQPLAHASSLS
SSPVKKV*
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mRNA from alignment at chr_00:2813514..2814494-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002630.1 ID=Ec-00_002630.1|Name=Ec-00_002630.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=981bp|location=Sequence derived from alignment at chr_00:2813514..2814494- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACGTCCTAATGAACGCTTTATGCCTCGTGATGTTTGTGCTGATGCC
TCGTCTCGTCTCTTCTCTTCTTGTGCTGCTGTTGGATTGGATGGCTTGTG
ACGTCACCGCGGCGGCCTGGCAGGGTCAGGCGGATCGCTGTTTCTACGAG
ACCCTGCTGAAACAAAAGCCAGAGAGGTAGGTGGGCATGCATGTTTTGCA
TTTGTTTCTTTACAGGCATCGATCGCGCTCACCGGCTGGCTAAATGACGA
TTCTCCCGTCTTTTTGAAATATATGCGAATTTCTTTCTAGTCCGCGGACT
TCCGTGGTGTGTGTGCGTGTGTGTTGTGTTTTATATGCCTCTCTCTATAT
GTTTATGTGGCACTGGATATTTGCCGTCAATAGCGGGCGTTTGTATCAGA
TTTTGTTGCCTGTGGCGGCAGTGGTTGAACTCAAGCATCATCGTTCCGGG
CTGTGAAAAAAAACGCGGGAAAGCGGGCGCTAGGCATCGAACAGAAGCAA
TGTTGAGTTTCGCGTTGTAACAACCCCCATGAATCAATACTACAGTAGGT
CATTTTTTTTTCTTGCTTGTCATGTGTCGCCGTTGATTGCTTAACTACCT
CACGGACGGTCTTTGACTGTCTGGATTGTCTCTCCCTCCCTTGACTGCCC
CACTCACCGCCTTCGCCGTTCGCTTCCTAATGCCCGGGTGGGCCGAAAAG
TCACATGGCGCAGGACTGGTGTCTGGCGCACGGGGTGTGCGGGGCGGCTG
AAGCGGATGCTCTCTACAAGAGAGTCTGCAAGAGGAAAGGGCTGCAACCG
TTGGCCCACGCGTCGTCTCTATCCAGCTCCCCCGTCAAAAAGGTAACTGC
GCGCGCACACGTTTTGGCTGGAGTGACATTTATCGTGTACACTCTCTTGT
TTTTTGTCGGCAGCAGACTCTGATCTTTACCTTCTTCATGCGTGGCCCTG
ACTGGTGCGACAAACGTACACCAAGGTGTAG
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Coding sequence (CDS) from alignment at chr_00:2813514..2814494-

>Ec-00_002630.1 ID=Ec-00_002630.1|Name=Ec-00_002630.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=324bp|location=Sequence derived from alignment at chr_00:2813514..2814494- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACGTCCTAATGAACGCTTTATGCCTCGTGATGTTTGTGCTGATGCC
TCGTCTCGTCTCTTCTCTTCTTGTGCTGCTGTTGGATTGGATGGCTTGTG
ACGTCACCGCGGCGGCCTGGCAGGGTCAGGCGGATCGCTGTTTCTACGAG
ACCCTGCTGAAACAAAAGCCAGAGAGTCACATGGCGCAGGACTGGTGTCT
GGCGCACGGGGTGTGCGGGGCGGCTGAAGCGGATGCTCTCTACAAGAGAG
TCTGCAAGAGGAAAGGGCTGCAACCGTTGGCCCACGCGTCGTCTCTATCC
AGCTCCCCCGTCAAAAAGGTGTAG
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Synonyms
The feature 'Ec-00_002630.1' has the following synonyms
Synonym
Esi1571_0001
Esi_1571_0001