Ec-00_002580.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002580.1
Unique NameEc-00_002580.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length58
Homology
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BLAST of Ec-00_002580.1 vs. uniprot
Match: D7G4V1_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V1_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.900e-26
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 MVFNEQAKVLLMVANLLLPWSTRAFVLHCNANQRSVLGRHEGVVMMETLHGN 156
            MVFNEQAKVLLMVANLLLPWSTRAFVLHCNANQRSVLGRHEGVVMMETLHGN
Sbjct:    1 MVFNEQAKVLLMVANLLLPWSTRAFVLHCNANQRSVLGRHEGVVMMETLHGN 52
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BLAST of Ec-00_002580.1 vs. uniprot
Match: A0A6H5JW52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW52_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 8.020e-24
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 MVFNEQAKVLLMVANLLLPWSTRAFVLHCNANQRSVLGRHEGVVMMETLHGN 156
            MV NEQAKVLLMV NLLLPWSTRAFVLHC+ANQRSVLGRHEGVVMME LHGN
Sbjct:    1 MVLNEQAKVLLMVVNLLLPWSTRAFVLHCSANQRSVLGRHEGVVMMEMLHGN 52
The following BLAST results are available for this feature:
BLAST of Ec-00_002580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4V1_ECTSI2.900e-26100.00Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JW52_9PHAE8.020e-2492.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2778458..2778822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue2.9e-21
Seed eggNOG ortholog2880.D7G4V1
Length174
Hectar predicted targeting categorysignal peptide
Gene idEc-00_002580.1
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002580Ec-00_002580Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2778458..2778822 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002580.1.1Ec-00_002580.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2778458..2778614 +
Ec-00_002580.1.2Ec-00_002580.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2778806..2778822 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002580.1CDS:Ec-00_002580.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2778458..2778614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002580.1Ec-00_002580.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2778458..2778822 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002580.1 ID=Ec-00_002580.1|Name=Ec-00_002580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=58bp
MVFNEQAKVLLMVANLLLPWSTRAFVLHCNANQRSVLGRHEGVVMMETLH
GNVTWLF*
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spliced messenger RNA

>Ec-00_002580.1 ID=Ec-00_002580.1|Name=Ec-00_002580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=174bp|location=Sequence derived from alignment at chr_00:2778458..2778822+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTCAACGAGCAGGCAAAGGTGCTACTGATGGTGGCGAACCTTCT
GCTTCCATGGAGTACCAGAGCTTTCGTGCTCCACTGCAATGCCAACCAGC
GATCCGTGCTCGGCAGGCACGAAGGCGTTGTCATGATGGAGACTCTTCAC
GGGAACGTCACATGGCTCTTCTGA
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protein sequence of Ec-00_002580.1

>Ec-00_002580.1 ID=Ec-00_002580.1|Name=Ec-00_002580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=58bp
MVFNEQAKVLLMVANLLLPWSTRAFVLHCNANQRSVLGRHEGVVMMETLH
GNVTWLF*
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mRNA from alignment at chr_00:2778458..2778822+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002580.1 ID=Ec-00_002580.1|Name=Ec-00_002580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=365bp|location=Sequence derived from alignment at chr_00:2778458..2778822+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGTTCAACGAGCAGGCAAAGGTGCTACTGATGGTGGCGAACCTTCT
GCTTCCATGGAGTACCAGAGCTTTCGTGCTCCACTGCAATGCCAACCAGC
GATCCGTGCTCGGCAGGCACGAAGGCGTTGTCATGATGGAGACTCTTCAC
GGGAACGGTGAGATATCTAGCATATTGTTTCGTCAAAATACACACAGATA
GGGCAACATGCAGGGGGGGGGTGCAACGGCAGAGTGGCAGAGTACTTCTA
GCCTGCTATGCTTGGGTTGGTGACGTTCGCATACGGCTGCCGCTGCCGTT
GTTCGTAAAAACTCGACACCTTCCTGCTGGTTTCATTATCGTTAGTAGTC
ACATGGCTCTTCTGA
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Coding sequence (CDS) from alignment at chr_00:2778458..2778822+

>Ec-00_002580.1 ID=Ec-00_002580.1|Name=Ec-00_002580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=174bp|location=Sequence derived from alignment at chr_00:2778458..2778822+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGTTCAACGAGCAGGCAAAGGTGCTACTGATGGTGGCGAACCTTCT
GCTTCCATGGAGTACCAGAGCTTTCGTGCTCCACTGCAATGCCAACCAGC
GATCCGTGCTCGGCAGGCACGAAGGCGTTGTCATGATGGAGACTCTTCAC
GGGAACGTCACATGGCTCTTCTGA
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Synonyms
The feature 'Ec-00_002580.1' has the following synonyms
Synonym
Esi552_0003
Esi_552_0003