Ec-00_002550.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002550.1
Unique NameEc-00_002550.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length87
Homology
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BLAST of Ec-00_002550.1 vs. uniprot
Match: D7FL82_ECTSI (Uncharacterized protein n=2 Tax=Eukaryota TaxID=2759 RepID=D7FL82_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.820e-58
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 3 
Query:  294 MSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALLLIGETHSPQWTSISRSLQRHPFSGLVHSAGELLHTP 551
            MSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALLLIGETHSPQWTSISRSLQRHPFSGLVHSAGELLHTP
Sbjct:    1 MSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALLLIGETHSPQWTSISRSLQRHPFSGLVHSAGELLHTP 86
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BLAST of Ec-00_002550.1 vs. uniprot
Match: J9I0R4_9SPIT (Uncharacterized protein n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I0R4_9SPIT)

HSP 1 Score: 127 bits (318), Expect = 1.680e-30
Identity = 58/86 (67.44%), Postives = 68/86 (79.07%), Query Frame = 3 
Query:  294 MSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALLLIGETHSPQWTSISRSLQRHPFSGLVHSAGELLHTP 551
            ++NCCSHG  LHF LQ+SHLN CYYHQDLH+  F+  SR ++R    ALLLI  + S QW+SI R+LQRHPFSGLVHSAGELLHTP
Sbjct:  575 VTNCCSHGNLLHFGLQNSHLNNCYYHQDLHQTLFNPGSRQRLRNNAHALLLIAASLSLQWSSIGRTLQRHPFSGLVHSAGELLHTP 660
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BLAST of Ec-00_002550.1 vs. uniprot
Match: A0A6J5WQM7_PRUAR (Uncharacterized protein n=2 Tax=fabids TaxID=91835 RepID=A0A6J5WQM7_PRUAR)

HSP 1 Score: 115 bits (287), Expect = 3.130e-30
Identity = 57/86 (66.28%), Postives = 62/86 (72.09%), Query Frame = 3 
Query:  294 MSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALLLIGETHSPQWTSISRSLQRHPFSGLVHSAGELLHTP 551
            M  C SHGTF  F LQSSHLNICYYHQDLHR      SRP+   + RALLLIG  H P+   I R+L+RHPFSGLV SAGELLHTP
Sbjct:    1 MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWHLPRRPGIGRALKRHPFSGLVDSAGELLHTP 86
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BLAST of Ec-00_002550.1 vs. uniprot
Match: A0A061DNY0_THECC (Uncharacterized protein n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061DNY0_THECC)

HSP 1 Score: 108 bits (270), Expect = 1.160e-27
Identity = 55/86 (63.95%), Postives = 60/86 (69.77%), Query Frame = 3 
Query:  294 MSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALLLIGETHSPQWTSISRSLQRHPFSGLVHSAGELLHTP 551
            M  C SHGTF  F LQSSHLNICYYHQDLHR +    SR + RY+  ALLLIG    P+   I  +LQRHPFSGLV SA ELLHTP
Sbjct:    1 MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRQSLRPGSRLEFRYDRSALLLIGAWPLPRRPGIGLALQRHPFSGLVDSASELLHTP 86
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BLAST of Ec-00_002550.1 vs. uniprot
Match: A0A2I0W5S3_9ASPA (Uncharacterized protein n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W5S3_9ASPA)

HSP 1 Score: 108 bits (269), Expect = 1.640e-27
Identity = 53/86 (61.63%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:  294 MSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALLLIGETHSPQWTSISRSLQRHPFSGLVHSAGELLHTP 551
            M  C SHGTF  F LQSSHLNICYYHQD HR    + SRP+     RALLLI     P+W  +  +L+RHPFSGLV SAGELLHTP
Sbjct:    1 MCKCRSHGTFPPFGLQSSHLNICYYHQDPHRRPLRTGSRPEFYSGRRALLLIWAWPLPRWPGVGHALKRHPFSGLVDSAGELLHTP 86
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BLAST of Ec-00_002550.1 vs. uniprot
Match: C6JS61_SORBI (Uncharacterized protein (Fragment) n=18 Tax=Mesangiospermae TaxID=1437183 RepID=C6JS61_SORBI)

HSP 1 Score: 108 bits (270), Expect = 1.730e-27
Identity = 59/101 (58.42%), Postives = 64/101 (63.37%), Query Frame = 3 
Query:  213 NPLPFR*RRPEGRLSERTSPIS*DRLTMSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALLLIGETHSPQWTSISRSLQRHPFSG 515
            NP+PFR  R E  LS   +P     L M  C SHGTFL F LQSSHLNICYYHQDLHR      SRP      RALLLIG   SP+W  + R+LQRHPFSG
Sbjct:    1 NPIPFRATR-EIALSAGVTPSLRIGLPMCKCRSHGTFLLFGLQSSHLNICYYHQDLHRRPLRPGSRPGFCSGRRALLLIGAWRSPRWPGVGRALQRHPFSG 100
[Close]
BLAST of Ec-00_002550.1 vs. uniprot
Match: A0A388LYU8_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LYU8_CHABU)

HSP 1 Score: 112 bits (279), Expect = 6.480e-27
Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = 3 
Query:  294 MSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALLLIGETHSPQWTSISRSLQRHPFSGLVHSA 530
            MS  CSHGT LHF LQSSHLNICYYHQDLHR   H  S  K+R  PRALLL+  + SP+  SI R+LQRHPF+GL+ SA
Sbjct:    1 MSKXCSHGTLLHFGLQSSHLNICYYHQDLHRDPLHPGSPSKLRSRPRALLLVAASESPRRPSIGRALQRHPFTGLIDSA 79
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BLAST of Ec-00_002550.1 vs. uniprot
Match: A0A0K9RCS4_SPIOL (Uncharacterized protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RCS4_SPIOL)

HSP 1 Score: 106 bits (265), Expect = 6.580e-27
Identity = 54/86 (62.79%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:  294 MSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALLLIGETHSPQWTSISRSLQRHPFSGLVHSAGELLHTP 551
            M  C SHGTF  F LQSSHLNICYYHQDLH+      SR +   +  ALLLIG  H P+   I  +LQRHPFSGLV SAGELLHTP
Sbjct:    1 MCKCRSHGTFPLFGLQSSHLNICYYHQDLHQRPLRPGSRHRFCSDRCALLLIGAWHLPRRPGIGHALQRHPFSGLVDSAGELLHTP 86
[Close]
BLAST of Ec-00_002550.1 vs. uniprot
Match: A0A8I6X449_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6X449_HORVV)

HSP 1 Score: 107 bits (266), Expect = 8.020e-27
Identity = 56/100 (56.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query:  252 LSERTSPIS*DRLTMSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALLLIGETHSPQWTSISRSLQRHPFSGLVHSAGELLHTP 551
            LS   +P     L M  C SHGTFL F LQSS+LNI YYHQDLH       SRP+     R LLLIG   SP+W  +  +LQ HPF GLV SAGELLHTP
Sbjct:    6 LSAGVTPALRIGLPMCKCRSHGTFLLFGLQSSNLNIFYYHQDLHGRPLRLGSRPRFCSGRRTLLLIGAWRSPRWPGVGHALQHHPFLGLVDSAGELLHTP 105
[Close]
BLAST of Ec-00_002550.1 vs. uniprot
Match: A0A453JH35_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453JH35_AEGTS)

HSP 1 Score: 104 bits (259), Expect = 7.670e-26
Identity = 52/82 (63.41%), Postives = 57/82 (69.51%), Query Frame = 3 
Query:  288 LTMSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALLLIGETHSPQWTSISRSLQRHPFSGLVHSAG 533
            L M  C SHGTFL F LQSS+LNICYYHQDLHR       RP      RALLLIG   SP+W+ + R+LQRHPFSGLV SAG
Sbjct:   18 LPMCKCHSHGTFLLFGLQSSYLNICYYHQDLHRRPLCPGLRPVFCSGRRALLLIGAWRSPKWSGVGRALQRHPFSGLVDSAG 99
The following BLAST results are available for this feature:
BLAST of Ec-00_002550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL82_ECTSI1.820e-58100.00Uncharacterized protein n=2 Tax=Eukaryota TaxID=27... [more]
J9I0R4_9SPIT1.680e-3067.44Uncharacterized protein n=2 Tax=Oxytricha trifalla... [more]
A0A6J5WQM7_PRUAR3.130e-3066.28Uncharacterized protein n=2 Tax=fabids TaxID=91835... [more]
A0A061DNY0_THECC1.160e-2763.95Uncharacterized protein n=1 Tax=Theobroma cacao Ta... [more]
A0A2I0W5S3_9ASPA1.640e-2761.63Uncharacterized protein n=1 Tax=Dendrobium catenat... [more]
C6JS61_SORBI1.730e-2758.42Uncharacterized protein (Fragment) n=18 Tax=Mesang... [more]
A0A388LYU8_CHABU6.480e-2765.82Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A0K9RCS4_SPIOL6.580e-2762.79Uncharacterized protein n=1 Tax=Spinacia oleracea ... [more]
A0A8I6X449_HORVV8.020e-2756.00Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
A0A453JH35_AEGTS7.670e-2663.41Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2763804..2764358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue9.5e-45
Seed eggNOG ortholog2880.D7FL82
Length555
Hectar predicted targeting categoryother localisation
Gene idEc-00_002550.1
EggNOG OGs2E3VD@1,2SAV9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002550Ec-00_002550Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2763804..2764358 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002550.1.1Ec-00_002550.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2763804..2764358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002550.1CDS:Ec-00_002550.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2763804..2764064 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0025505UTR:Ec-00_002550.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 2764065..2764358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002550.1Ec-00_002550.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2763804..2764064 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002550.1 ID=Ec-00_002550.1|Name=Ec-00_002550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=87bp
MSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALL
LIGETHSPQWTSISRSLQRHPFSGLVHSAGELLHTP*
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spliced messenger RNA

>Ec-00_002550.1 ID=Ec-00_002550.1|Name=Ec-00_002550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=555bp|location=Sequence derived from alignment at chr_00:2763804..2764358- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CCACCGAATTTTCAAGGGCCGTCTAGAGCGCACGCGGACGGGGCAAAAGG
TGCCCCGCTTTCCCGCCCAGTCCACCCTATCGCCGGACAAGCCGATTCCA
GGGTCGACCAAAGGCGTTAACGAGAAAAGACAACTCTCGCCGGGACTCTA
GCCGACGTCTTCGGTTGCGCTTGTGTCGCCACTCAGTATCCACGTCCCGG
TGCGGGAATCTTAACCCGCTTCCCTTTCGATAGCGGCGACCCGAGGGTCG
CCTTTCCGAACGGACTTCTCCTATCTCTTAGGATCGACTAACCCATGTCC
AATTGCTGTTCACATGGAACCTTTCTCCACTTCAGTCTTCAAAGTTCTCA
TTTGAATATTTGCTACTACCACCAAGATCTGCACCGGGGCACGTTTCACT
CCGCCTCACGGCCGAAGATGCGCTACGAGCCCCGCGCCCTCCTACTCATT
GGGGAAACGCACTCTCCCCAATGGACTAGTATAAGCCGCTCGCTTCAGCG
CCATCCATTTTCAGGGCTAGTTCATTCGGCAGGTGAGTTGTTACACACTC
CTTAG
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protein sequence of Ec-00_002550.1

>Ec-00_002550.1 ID=Ec-00_002550.1|Name=Ec-00_002550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=87bp
MSNCCSHGTFLHFSLQSSHLNICYYHQDLHRGTFHSASRPKMRYEPRALL
LIGETHSPQWTSISRSLQRHPFSGLVHSAGELLHTP*
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mRNA from alignment at chr_00:2763804..2764358-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002550.1 ID=Ec-00_002550.1|Name=Ec-00_002550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=555bp|location=Sequence derived from alignment at chr_00:2763804..2764358- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CCACCGAATTTTCAAGGGCCGTCTAGAGCGCACGCGGACGGGGCAAAAGG
TGCCCCGCTTTCCCGCCCAGTCCACCCTATCGCCGGACAAGCCGATTCCA
GGGTCGACCAAAGGCGTTAACGAGAAAAGACAACTCTCGCCGGGACTCTA
GCCGACGTCTTCGGTTGCGCTTGTGTCGCCACTCAGTATCCACGTCCCGG
TGCGGGAATCTTAACCCGCTTCCCTTTCGATAGCGGCGACCCGAGGGTCG
CCTTTCCGAACGGACTTCTCCTATCTCTTAGGATCGACTAACCCATGTCC
AATTGCTGTTCACATGGAACCTTTCTCCACTTCAGTCTTCAAAGTTCTCA
TTTGAATATTTGCTACTACCACCAAGATCTGCACCGGGGCACGTTTCACT
CCGCCTCACGGCCGAAGATGCGCTACGAGCCCCGCGCCCTCCTACTCATT
GGGGAAACGCACTCTCCCCAATGGACTAGTATAAGCCGCTCGCTTCAGCG
CCATCCATTTTCAGGGCTAGTTCATTCGGCAGGTGAGTTGTTACACACTC
CTTAG
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Coding sequence (CDS) from alignment at chr_00:2763804..2764358-

>Ec-00_002550.1 ID=Ec-00_002550.1|Name=Ec-00_002550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=261bp|location=Sequence derived from alignment at chr_00:2763804..2764358- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCCAATTGCTGTTCACATGGAACCTTTCTCCACTTCAGTCTTCAAAG
TTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGGGGCACGT
TTCACTCCGCCTCACGGCCGAAGATGCGCTACGAGCCCCGCGCCCTCCTA
CTCATTGGGGAAACGCACTCTCCCCAATGGACTAGTATAAGCCGCTCGCT
TCAGCGCCATCCATTTTCAGGGCTAGTTCATTCGGCAGGTGAGTTGTTAC
ACACTCCTTAG
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Synonyms
The feature 'Ec-00_002550.1' has the following synonyms
Synonym
Esi1543_0001
Esi_1543_0001