Ec-00_002500.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002500.1
Unique NameEc-00_002500.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length51
Homology
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BLAST of Ec-00_002500.1 vs. uniprot
Match: D7FL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL21_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 9.090e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA 150
            MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA
Sbjct:    1 MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA 50
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BLAST of Ec-00_002500.1 vs. uniprot
Match: D7G601_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G601_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.300e-15
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 3 
Query:    3 GVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACV 152
            GVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACV
Sbjct:   91 GVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACV 140
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BLAST of Ec-00_002500.1 vs. uniprot
Match: D7G6L1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.290e-15
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 3 
Query:    3 GVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACV 152
            GVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACV
Sbjct:   50 GVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACV 99
[Close]
BLAST of Ec-00_002500.1 vs. uniprot
Match: A0A6H5JUG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG3_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 5.110e-11
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 3 
Query:    3 GVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACV 152
            GVRDV  DSDD I+DNRPIH+VGDTD           CSRDDSDDSVAC+
Sbjct:   26 GVRDVLDDSDDGINDNRPIHRVGDTDDEGDDEDGANGCSRDDSDDSVACM 75
The following BLAST results are available for this feature:
BLAST of Ec-00_002500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FL21_ECTSI9.090e-21100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G601_ECTSI1.300e-15100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6L1_ECTSI2.290e-15100.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JUG3_9PHAE5.110e-1166.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2730136..2730288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length153
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_002500.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002500Ec-00_002500Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2730136..2730288 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002500.1.1Ec-00_002500.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2730136..2730288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002500.1CDS:Ec-00_002500.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2730136..2730288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002500.1Ec-00_002500.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2730136..2730288 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002500.1 ID=Ec-00_002500.1|Name=Ec-00_002500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=51bp
MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA
*
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spliced messenger RNA

>Ec-00_002500.1 ID=Ec-00_002500.1|Name=Ec-00_002500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=153bp|location=Sequence derived from alignment at chr_00:2730136..2730288- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCCGCGACGTCTTTGGTGATTCGGACGACGACATTGACGACAAC
CGACCCATCCATCAAGTTGGGGACACGGATGATGACGGCGACGGCGAGGA
TGGGGCGAACGGCTGCAGCCGCGACGACTCTGACGATAGCGTCGCATGCG
TAG
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protein sequence of Ec-00_002500.1

>Ec-00_002500.1 ID=Ec-00_002500.1|Name=Ec-00_002500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=51bp
MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA
*
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mRNA from alignment at chr_00:2730136..2730288-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002500.1 ID=Ec-00_002500.1|Name=Ec-00_002500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=153bp|location=Sequence derived from alignment at chr_00:2730136..2730288- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGTCCGCGACGTCTTTGGTGATTCGGACGACGACATTGACGACAAC
CGACCCATCCATCAAGTTGGGGACACGGATGATGACGGCGACGGCGAGGA
TGGGGCGAACGGCTGCAGCCGCGACGACTCTGACGATAGCGTCGCATGCG
TAG
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Coding sequence (CDS) from alignment at chr_00:2730136..2730288-

>Ec-00_002500.1 ID=Ec-00_002500.1|Name=Ec-00_002500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=153bp|location=Sequence derived from alignment at chr_00:2730136..2730288- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGTCCGCGACGTCTTTGGTGATTCGGACGACGACATTGACGACAAC
CGACCCATCCATCAAGTTGGGGACACGGATGATGACGGCGACGGCGAGGA
TGGGGCGAACGGCTGCAGCCGCGACGACTCTGACGATAGCGTCGCATGCG
TAG
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Synonyms
The feature 'Ec-00_002500.1' has the following synonyms
Synonym
Esi1520_0001
Esi_1520_0001