Ec-00_002440.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002440.1
Unique NameEc-00_002440.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length116
Homology
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BLAST of Ec-00_002440.1 vs. uniprot
Match: D7FKY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKY1_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.090e-66
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 
Query:    1 MPSRPPALSPLVHQRHSNKQRKKILALQLTNNKVLSTAASDKERSARREGDLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRRAARAELEFCGGISQR 345
            MPSRPPALSPLVHQRHSNKQRKKILALQLTNNKVLSTAASDKERSARREGDLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRRAARAELEFCGGISQR
Sbjct:    1 MPSRPPALSPLVHQRHSNKQRKKILALQLTNNKVLSTAASDKERSARREGDLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRRAARAELEFCGGISQR 115
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BLAST of Ec-00_002440.1 vs. uniprot
Match: A0A6H5JBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW0_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 4.750e-41
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:   37 HQRHSNKQRKKILALQLTNNKVLSTAASDKERSARREGDLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRRAARAELEFC 327
            HQRHSNKQRKKILALQLTNNKVLSTAASDKERSAR EG+LLAK+DTAE TIASLTDTVAEQQLAAA ESERF+QA RQLDN+L+TSR+AARAELE C
Sbjct:  122 HQRHSNKQRKKILALQLTNNKVLSTAASDKERSARTEGELLAKLDTAEYTIASLTDTVAEQQLAAAMESERFDQALRQLDNELQTSRQAARAELELC 218
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BLAST of Ec-00_002440.1 vs. uniprot
Match: D7FRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE6_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 9.720e-41
Identity = 88/99 (88.89%), Postives = 92/99 (92.93%), Query Frame = 1 
Query:   31 LVHQRHSNKQRKKILALQLTNNKVLSTAASDKERSARREGDLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRRAARAELEFC 327
            LV  RHSNKQRKKILALQLTNNKVLSTAASDKERSARREGDL AK+DTA DTIASLTDTVAEQQ+AAA E ERFEQA RQLDN+LKTSR+AARAELEFC
Sbjct:  209 LVVTRHSNKQRKKILALQLTNNKVLSTAASDKERSARREGDLRAKLDTAGDTIASLTDTVAEQQMAAAMECERFEQALRQLDNELKTSRQAARAELEFC 307
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BLAST of Ec-00_002440.1 vs. uniprot
Match: D7G3D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D5_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.740e-40
Identity = 89/101 (88.12%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:   25 SPLVHQRHSNKQRKKILALQLTNNKVLSTAASDKERSARREGDLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRRAARAELEFC 327
            S L   RHS KQRKKILALQLTNNKVLSTAASDKERSAR EGDLLAK+DTAEDTIA LTDTVAEQQLAAA ESERF+QA RQLDN+LKTSRRAARAELEFC
Sbjct:  223 SSLAVARHSKKQRKKILALQLTNNKVLSTAASDKERSARTEGDLLAKLDTAEDTIAFLTDTVAEQQLAAAMESERFDQALRQLDNELKTSRRAARAELEFC 323
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BLAST of Ec-00_002440.1 vs. uniprot
Match: D7G5N0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N0_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 9.040e-13
Identity = 50/95 (52.63%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   61 RKKILALQLTNNKVLSTAASDKERSARREGDLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRRAARAELEFCGGISQR 345
            R ++ AL+ T + VL TAASD E SAR EGDL+AK+DTAE  +A+LTDTVAEQQLAA  ESER E + R ++ +  T+R +  A  E      QR
Sbjct:   95 RDEVEALRATVDYVLETAASDHETSARTEGDLVAKLDTAEGIVAALTDTVAEQQLAAQKESERSELSLRLVEQEAATARASTLAVEEELSEAEQR 189
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BLAST of Ec-00_002440.1 vs. uniprot
Match: D7G4D4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D4_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.630e-11
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:   61 RKKILALQLTNNKVLSTAASDKERSARREGDLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRRAARAELEFCGGISQR 345
            R ++ AL+ T + VL TAASD E SAR EGDL+AK+DTAE  +A+LTDTVAEQQLAA  ESER + + R ++ +   +R +  A  E      QR
Sbjct:  317 RDEVEALRATVDYVLETAASDHETSARTEGDLIAKLDTAEGIVAALTDTVAEQQLAAQKESERSDLSLRLVEQEAAMARASTLAIEEELSEAEQR 411
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BLAST of Ec-00_002440.1 vs. uniprot
Match: A0A6H5KMQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.270e-9
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:   61 RKKILALQLTNNKVLSTAASDKERSARREGDLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRRAARAELEFCGGISQR 345
            R ++ AL++T + VL TAASD E SAR E DL+ K+DTAE  +A+LTDTVAEQQLAA  ESE+ + + R ++ +   +R +  A  E      QR
Sbjct:  349 RDEVEALRVTVDYVLETAASDHETSARTESDLVEKLDTAEGIVAALTDTVAEQQLAAQKESEQSDLSLRLVEQEAAKARASTLAVGEELSEAEQR 443
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BLAST of Ec-00_002440.1 vs. uniprot
Match: D7FUJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ2_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.650e-8
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:   76 ALQLTNNKVLSTAASDKERSARREGDLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRRAA 306
            AL+ T + V  +AASD+E  AR EGDL+ K+DTAE  IA+LT+TVAEQQLAA  ESER + A R +  +L  S++ A
Sbjct:  100 ALRATIDYVEESAASDRETWARTEGDLVEKLDTAEGAIAALTETVAEQQLAAQRESERSQLALRLVVGELDVSQQEA 176
[Close]
BLAST of Ec-00_002440.1 vs. uniprot
Match: D7G5D2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D2_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 8.040e-7
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:   61 RKKILALQLTNNKVLSTAASDKERSARREGDLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDN----------KLKTSRRAARAELEFC 327
            R+++ AL+   + V  TAASD+E SAR EGD +  + TAE TIA+LT+TV EQQLA   ESER + + R +++          K + S  A R  LE C
Sbjct:   87 REEVEALRAIIDHVEETAASDRETSARTEGDPVPNLSTAEGTIAALTETVGEQQLATQRESERSDLSLRLVESNREASLQEAAKARASTLAVREGLESC 185
The following BLAST results are available for this feature:
BLAST of Ec-00_002440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FKY1_ECTSI1.090e-66100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBW0_9PHAE4.750e-4188.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE6_ECTSI9.720e-4188.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3D5_ECTSI1.740e-4088.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5N0_ECTSI9.040e-1352.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4D4_ECTSI1.630e-1150.53Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KMQ6_9PHAE1.270e-947.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUJ2_ECTSI2.650e-854.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5D2_ECTSI8.040e-743.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2701369..2701716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length348
Hectar predicted targeting categoryother localisation
Gene idEc-00_002440.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002440Ec-00_002440Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2701369..2701716 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002440.1.1Ec-00_002440.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2701369..2701716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002440.1CDS:Ec-00_002440.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2701369..2701716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002440.1Ec-00_002440.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2701369..2701716 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002440.1 ID=Ec-00_002440.1|Name=Ec-00_002440.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=116bp
MPSRPPALSPLVHQRHSNKQRKKILALQLTNNKVLSTAASDKERSARREG
DLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRR
AARAELEFCGGISQR*
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spliced messenger RNA

>Ec-00_002440.1 ID=Ec-00_002440.1|Name=Ec-00_002440.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=348bp|location=Sequence derived from alignment at chr_00:2701369..2701716- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTCTCGTCCACCTGCCCTATCCCCCCTCGTCCACCAGAGGCACTC
GAACAAACAGCGCAAGAAAATTCTCGCGCTGCAGCTGACCAACAACAAGG
TCCTGTCGACGGCCGCTTCTGACAAGGAGAGGTCGGCCCGGAGGGAGGGG
GACCTCCTGGCAAAGGTGGACACCGCCGAGGACACCATTGCCTCCCTGAC
CGACACGGTGGCCGAGCAGCAGCTGGCCGCCGCGACGGAGTCCGAGCGGT
TTGAACAGGCCCAGCGCCAGCTCGACAACAAGCTCAAGACTTCGAGGCGA
GCCGCTCGAGCGGAGCTCGAGTTTTGTGGCGGGATCTCGCAGAGGTAG
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protein sequence of Ec-00_002440.1

>Ec-00_002440.1 ID=Ec-00_002440.1|Name=Ec-00_002440.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=116bp
MPSRPPALSPLVHQRHSNKQRKKILALQLTNNKVLSTAASDKERSARREG
DLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRR
AARAELEFCGGISQR*
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mRNA from alignment at chr_00:2701369..2701716-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002440.1 ID=Ec-00_002440.1|Name=Ec-00_002440.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=348bp|location=Sequence derived from alignment at chr_00:2701369..2701716- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCCTCTCGTCCACCTGCCCTATCCCCCCTCGTCCACCAGAGGCACTC
GAACAAACAGCGCAAGAAAATTCTCGCGCTGCAGCTGACCAACAACAAGG
TCCTGTCGACGGCCGCTTCTGACAAGGAGAGGTCGGCCCGGAGGGAGGGG
GACCTCCTGGCAAAGGTGGACACCGCCGAGGACACCATTGCCTCCCTGAC
CGACACGGTGGCCGAGCAGCAGCTGGCCGCCGCGACGGAGTCCGAGCGGT
TTGAACAGGCCCAGCGCCAGCTCGACAACAAGCTCAAGACTTCGAGGCGA
GCCGCTCGAGCGGAGCTCGAGTTTTGTGGCGGGATCTCGCAGAGGTAG
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Coding sequence (CDS) from alignment at chr_00:2701369..2701716-

>Ec-00_002440.1 ID=Ec-00_002440.1|Name=Ec-00_002440.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=348bp|location=Sequence derived from alignment at chr_00:2701369..2701716- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCCTCTCGTCCACCTGCCCTATCCCCCCTCGTCCACCAGAGGCACTC
GAACAAACAGCGCAAGAAAATTCTCGCGCTGCAGCTGACCAACAACAAGG
TCCTGTCGACGGCCGCTTCTGACAAGGAGAGGTCGGCCCGGAGGGAGGGG
GACCTCCTGGCAAAGGTGGACACCGCCGAGGACACCATTGCCTCCCTGAC
CGACACGGTGGCCGAGCAGCAGCTGGCCGCCGCGACGGAGTCCGAGCGGT
TTGAACAGGCCCAGCGCCAGCTCGACAACAAGCTCAAGACTTCGAGGCGA
GCCGCTCGAGCGGAGCTCGAGTTTTGTGGCGGGATCTCGCAGAGGTAG
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Synonyms
The feature 'Ec-00_002440.1' has the following synonyms
Synonym
Esi1496_0002
Esi_1496_0002