Ec-00_002430.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002430.1
Unique NameEc-00_002430.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length133
Homology
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BLAST of Ec-00_002430.1 vs. uniprot
Match: D7FKY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKY0_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 2.310e-94
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:    1 MFDVAAPTPFFAFAANRPRRQQTTYHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGEWKRNEMSKV 396
            MFDVAAPTPFFAFAANRPRRQQTTYHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGEWKRNEMSKV
Sbjct:    1 MFDVAAPTPFFAFAANRPRRQQTTYHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGEWKRNEMSKV 132
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BLAST of Ec-00_002430.1 vs. uniprot
Match: D8LH94_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH94_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 5.020e-63
Identity = 100/105 (95.24%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:   58 RQQTTYHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGEW 372
            +++TTYHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSG++
Sbjct:  182 KKKTTYHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGKY 286
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BLAST of Ec-00_002430.1 vs. uniprot
Match: A0A6H5K8D9_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.560e-26
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 1 
Query:   73 YHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSA------------GKDKGEGPVR----KYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGEW 372
            Y FRC  + G+ ++ +F+QKA+ WY +EMKSTED  RY+Y+LIA  E A S             G  +G  P+     +YKRYRL D KDFDSLFFPEK+ LLR+L++FE K G +
Sbjct:  244 YDFRCDRQGGNIKVKDFIQKAYEWYTDEMKSTEDHSRYMYSLIAQPEPARSRLGIGGVEFPGMNGDGRGRNPLDPSPLRYKRYRLGDVKDFDSLFFPEKEQLLRVLENFEAKRGRY 359
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BLAST of Ec-00_002430.1 vs. uniprot
Match: A0A7S1U3S3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3S3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.970e-25
Identity = 48/105 (45.71%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:   58 RQQTTYHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGEW 372
            +++  +HFR   R+GDE I+ ++ KAF+WY +EM+  +D  RY+Y L A+    S +  D+G    RKYKRY+LS+ K F++LFFPEKD LL++L+HF+ K+G++
Sbjct:  216 KEKICFHFRTKLRNGDEVINAWIDKAFQWYIQEMEKLQDDSRYMYVLCADA--TSISNNDEGNDGQRKYKRYKLSEEKTFNALFFPEKDQLLKLLEHFQAKTGKY 318
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BLAST of Ec-00_002430.1 vs. uniprot
Match: D7FQ72_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ72_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 7.420e-23
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 1 
Query:   73 YHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAG---------KDKGEGPVRK-------YKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGEW 372
            Y FRC+  +G+E++  F+  A+ WY +EM+STED  RY+Y+L+A +E     G         +D+   PV+K       YKRY+L D KDFDSLFFPEK+ LLR L++FE K G +
Sbjct:  182 YTFRCAGPEGNEKVKNFITDAYAWYTKEMESTEDNARYMYSLVAAKEPPKKKGASARYPDGMEDEEGHPVKKEDSSPIIYKRYKLGDVKDFDSLFFPEKEQLLRALENFEAKRGRY 297
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BLAST of Ec-00_002430.1 vs. uniprot
Match: A0A7R9U422_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U422_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.230e-21
Identity = 43/105 (40.95%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:   58 RQQTTYHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGEW 372
            +++  +HFR +  +GDE I+ +++KAF WY +EM+  +D  RY+Y L  +    S +  D  +   RKYKRY+LS+ K F +LFFPEK+ LL++++HF+ K+G++
Sbjct:  211 KEKICFHFRTALPNGDEVINAWIEKAFEWYVDEMEKLQDNSRYMYVLAPDA--TSLSNNDSQDDNQRKYKRYKLSEEKTFSALFFPEKEQLLKLMEHFQAKTGKY 313
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BLAST of Ec-00_002430.1 vs. uniprot
Match: A0A7S2MPL9_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MPL9_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 3.700e-20
Identity = 43/106 (40.57%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:   55 RRQQTTYHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGEW 372
            +R+Q  +  +    DG +RID+ VQ+A  WY +E+ S+ D  RYLYT+++ E+ + S+ K   +    +YKRY LSD K F+SLFFP+K++LL +L  F  + G++
Sbjct:  184 KREQLIFELKSP--DGPKRIDDLVQRALEWYKKELLSSRDDSRYLYTIVSAEKLSMSSSKSSEDDDSIRYKRYALSDQKTFESLFFPDKESLLSLLDDFSQRKGKY 287
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BLAST of Ec-00_002430.1 vs. uniprot
Match: A0A7S2I3D4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2I3D4_9DINO)

HSP 1 Score: 88.2 bits (217), Expect = 1.260e-19
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:  106 ERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFE 354
            E +D ++QK + WY EE++  +D  RY+Y L+A     SSA KD  +   R Y+RY+LSD K F SLFFPEK+ LL+IL  FE
Sbjct:   72 EMVDSWIQKVYAWYLEELRKMQDHSRYMYELVAK----SSAKKDDDDASERTYRRYKLSDEKTFASLFFPEKETLLKILSDFE 150
[Close]
BLAST of Ec-00_002430.1 vs. uniprot
Match: A0A7S4B551_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B551_CHRCT)

HSP 1 Score: 90.1 bits (222), Expect = 2.120e-18
Identity = 45/118 (38.14%), Postives = 72/118 (61.02%), Query Frame = 1 
Query:   55 RRQQTTYHFRCSERDGDERIDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFAS-----------SAGKD-KGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGEW 372
            +R+   +  + S++DG ++ID F+++A  WY +E+    D  RY+YT+I+    AS           + G D KG  P   YKRY+LSD K F SLFFPEK+++L++L  F+ K+G++
Sbjct:  189 QREMIIFELKTSKKDGPQQIDRFIERALSWYKQELLKMRDDARYMYTMISKSPSASIVSEMTSTKRGATGADNKGGMP---YKRYKLSDQKTFKSLFFPEKESILKLLSDFQQKAGKY 303
[Close]
BLAST of Ec-00_002430.1 vs. uniprot
Match: A0A7S2NG30_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2NG30_9DINO)

HSP 1 Score: 85.9 bits (211), Expect = 2.190e-18
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:  112 IDEFVQKAFRWYCEEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGEWK 375
            ID F+  A++WY  E+K  ED  RYLY +        S   D+ EG  R YKRY+LS  K F SLFF EKD LL+IL+ F++K G++K
Sbjct:   48 IDSFINDAYQWYLGELKQMEDNSRYLYEMQVG---PGSKSGDRDEGGRRTYKRYKLSGEKTFGSLFFDEKDTLLKILKDFQNKMGKYK 132
The following BLAST results are available for this feature:
BLAST of Ec-00_002430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKY0_ECTSI2.310e-94100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LH94_ECTSI5.020e-6395.24AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K8D9_9PHAE4.560e-2648.28AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1U3S3_9STRA2.970e-2545.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
D7FQ72_ECTSI7.420e-2344.83AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9U422_9STRA1.230e-2140.95Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2MPL9_9EUKA3.700e-2040.57Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2I3D4_9DINO1.260e-1949.40Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S4B551_CHRCT2.120e-1838.14Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S2NG30_9DINO2.190e-1847.73Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2689918..2691678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.9
Seed ortholog evalue2.2e-53
Seed eggNOG ortholog2880.D8LH94
Length399
KEGG koko:K08900,ko:K14771
Hectar predicted targeting categoryother localisation
Gene idEc-00_002430.1
EggNOG free text desc.respiratory chain complex III assembly
EggNOG OGsCOG0465@1,KOG0743@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002430Ec-00_002430Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2689918..2691678 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002430.1.3Ec-00_002430.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2689918..2690056 -
Ec-00_002430.1.2Ec-00_002430.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2690405..2690476 -
Ec-00_002430.1.1Ec-00_002430.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2691491..2691678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002430.1CDS:Ec-00_002430.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2689918..2690056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002430.1Ec-00_002430.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2689918..2691678 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002430.1 ID=Ec-00_002430.1|Name=Ec-00_002430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=133bp
MFDVAAPTPFFAFAANRPRRQQTTYHFRCSERDGDERIDEFVQKAFRWYC
EEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFD
SLFFPEKDALLRILQHFEDKSGEWKRNEMSKV*
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spliced messenger RNA

>Ec-00_002430.1 ID=Ec-00_002430.1|Name=Ec-00_002430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=399bp|location=Sequence derived from alignment at chr_00:2689918..2691678- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGATGTTGCTGCACCTACGCCCTTTTTCGCGTTTGCCGCCAACCG
ACCACGACGCCAACAGACGACGTACCACTTCAGGTGTTCCGAGAGGGACG
GCGACGAACGCATCGACGAGTTCGTTCAAAAGGCATTCCGGTGGTACTGC
GAGGAGATGAAGTCCACGGAAGACCAAGGCCGATACCTTTACACGCTTAT
CGCGAACGAGGAGTTTGCGTCATCGGCTGGGAAGGACAAAGGGGAAGGAC
CCGTCAGAAAGTACAAGCGCTACCGCCTGAGCGACGGCAAGGACTTTGAC
AGCCTTTTCTTCCCGGAGAAGGACGCGCTGTTGAGGATCCTTCAGCACTT
CGAGGATAAGAGTGGTGAGTGGAAACGAAACGAGATGTCCAAGGTTTAA
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protein sequence of Ec-00_002430.1

>Ec-00_002430.1 ID=Ec-00_002430.1|Name=Ec-00_002430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=133bp
MFDVAAPTPFFAFAANRPRRQQTTYHFRCSERDGDERIDEFVQKAFRWYC
EEMKSTEDQGRYLYTLIANEEFASSAGKDKGEGPVRKYKRYRLSDGKDFD
SLFFPEKDALLRILQHFEDKSGEWKRNEMSKV*
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mRNA from alignment at chr_00:2689918..2691678-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002430.1 ID=Ec-00_002430.1|Name=Ec-00_002430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1761bp|location=Sequence derived from alignment at chr_00:2689918..2691678- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTCGATGTTGCTGCACCTACGCCCTTTTTCGCGTTTGCCGCCAACCG
ACCACGACGCCAACAGACGACGTACCACTTCAGGTGTTCCGAGAGGGACG
GCGACGAACGCATCGACGAGTTCGTTCAAAAGGCATTCCGGTGGTACTGC
GAGGAGATGAAGTCCACGGAAGACCAAGGCCGATACCTGTAAGACACATC
ACCATAACACTGCTGAATACAGTAATGGTCCTCAATAATGGGAGGTTTTG
GTGCCGCTATAGAGGGCAGTGCCGCTATTCTTAGTAGGGATTGTTCTGAG
AAATGCATTTGTGCAAAGCGATTTCGGTGCCGCTACAGAGGGCATTCCGC
TATTGAGGGTACCGTATTGAGGACCGCTGACTTTGCGTTTTTTTTAGTGT
TTGTGTTTAGATCGTTGAGGTTCGCTGGGCTTAGGGTGTCAATGACACGT
CACGTGTTCGACCTTGGGAAACATCACTGATGGCAGCCGCTGGCAGCTGA
TTCACACAAACGCATGCTTTATTTTCATCTTGCATCACGCCTTGATGACA
CCGCCGCTTCTAGGCTCTGATGAGCAGCCCACTCCGGAGGCGCGCCTTGT
ATGCAAAAGACATGATAACAGTAGAACACATCGAGATAGATGTATGCACA
CTGCCGTGTGGTGGAGAGTAATTGGTCATGCAGCCGCGTGGTGGAGAGTA
ATTGGTCATGCAGCCGTGTGGTGGAGAGTAATTGGTCATGCAGAGTGCAA
CATGCCAGACATCCCGACAACTTATTGAGAGCCTAAATTTCATCTAAATC
TTGGCGAGTACGAGCGAGCTGAAATGTGCCCCCCTGTGTATTGAGAGTGG
TTGATCCCTCAGGCAACGGAAATTCTCCAGAAGCTGGATACATTTTCCTC
TCTGACTGTTGTTGGCACACCTAAATCTGTTGCTCTCGTCGTACCTTTCT
GTCTTCCTGCTTGGTTTCTGTGTAAGAACTGCTTGGAGTTTCATGCGCGG
CACTGCAGCAGAAACATCAGTAAAAACAGCAGCTTCGAGAAAGATTCGCT
TCTTTTTTCAAGTTGTCCATCTTGTCGGCCCGAGCTGTTTCGAGACGGTA
TGTACGTTGGTCTCACGTTGCCATTTCTTTCGGTTCGACCGCGGTGAAGA
TATCGAAACCGCGTCGCTCGTGACATCGTGCGTGCACCGTCCGGCGTGGC
AGTTACACGCTTATCGCGAACGAGGAGTTTGCGTCATCGGCTGGGAAGGA
CAAAGGGGAAGGACCCGTCAGAAAGTGAGTAGCGCAGCCATATCTTGTTG
TATTGTTCTCGAGAATGTACCTTGCTGTTCTGCGTGCTACATACCCGCCG
GTAGAGGAAGTGCGCTTGAGAGAGTGAAACACTGGAACATCTGGCCTTGC
ATCGTTTGGGTTCGGAAGTGAGTACCGTAGGTTGCGTAAGATATCACCCC
CCCCCCGTTAAGCTCGATTACTGCACGACGAAGAGGATGCCACAGCGGCC
ATATGATGCATTGTGTGTCTTGATTCCCTCCGTCTCTGTGGTACCCCAAA
GCTTCTCACCCTGTCCTCGGCTTAGCGGTGCCCTAACCCCTATGTACGTC
AACCCCGACCCCGACGTTTAAGGTACAAGCGCTACCGCCTGAGCGACGGC
AAGGACTTTGACAGCCTTTTCTTCCCGGAGAAGGACGCGCTGTTGAGGAT
CCTTCAGCACTTCGAGGATAAGAGTGGTGAGTGGAAACGAAACGAGATGT
CCAAGGTTTAA
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Coding sequence (CDS) from alignment at chr_00:2689918..2691678-

>Ec-00_002430.1 ID=Ec-00_002430.1|Name=Ec-00_002430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=399bp|location=Sequence derived from alignment at chr_00:2689918..2691678- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTCGATGTTGCTGCACCTACGCCCTTTTTCGCGTTTGCCGCCAACCG
ACCACGACGCCAACAGACGACGTACCACTTCAGGTGTTCCGAGAGGGACG
GCGACGAACGCATCGACGAGTTCGTTCAAAAGGCATTCCGGTGGTACTGC
GAGGAGATGAAGTCCACGGAAGACCAAGGCCGATACCTTTACACGCTTAT
CGCGAACGAGGAGTTTGCGTCATCGGCTGGGAAGGACAAAGGGGAAGGAC
CCGTCAGAAAGTACAAGCGCTACCGCCTGAGCGACGGCAAGGACTTTGAC
AGCCTTTTCTTCCCGGAGAAGGACGCGCTGTTGAGGATCCTTCAGCACTT
CGAGGATAAGAGTGGTGAGTGGAAACGAAACGAGATGTCCAAGGTTTAA
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Synonyms
The feature 'Ec-00_002430.1' has the following synonyms
Synonym
Esi1492_0001
Esi_1492_0001