Ec-00_002420.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002420.2
Unique NameEc-00_002420.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length101
Homology
[Close]
BLAST of Ec-00_002420.2 vs. uniprot
Match: D7FKT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT1_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 2.120e-69
Identity = 143/173 (82.66%), Postives = 149/173 (86.13%), Query Frame = 2 
Query:  218 KVDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVGGLAERGGQIG--DASRITSKPVAQAPGGVGGGVRRTAGG 730
            ++DAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSV    ER G+ G  D  R+      ++P   GG  R  A G
Sbjct:   63 RLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSV----ERTGRAGRADRGRLEDHVKTRSPSPRGGRRRSPANG 231
[Close]
BLAST of Ec-00_002420.2 vs. uniprot
Match: D8LK48_ECTSI (Possible Cdc2-related protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK48_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 7.190e-63
Identity = 143/173 (82.66%), Postives = 149/173 (86.13%), Query Frame = 2 
Query:  218 KVDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVGGLAERGGQIG--DASRITSKPVAQAPGGVGGGVRRTAGG 730
            ++DAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSV    ER G+ G  D  R+      ++P   GG  R  A G
Sbjct: 1676 RLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSV----ERTGRAGRADRGRLEDHVKTRSPSPRGGRRRSPANG 1844
The following BLAST results are available for this feature:
BLAST of Ec-00_002420.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKT1_ECTSI2.120e-6982.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LK48_ECTSI7.190e-6382.66Possible Cdc2-related protein kinase n=2 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2679338..2681397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1489
Hectar predicted targeting categoryother localisation
Gene idEc-00_002420.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002420Ec-00_002420Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2679338..2681397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002420.2Ec-00_002420.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2680226..2680528 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002420.2.1Ec-00_002420.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2679338..2679401 +
Ec-00_002420.2.2Ec-00_002420.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2679742..2679900 +
Ec-00_002420.2.3Ec-00_002420.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2680132..2681397 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0024205UTR:Ec-00_002420.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 2679338..2679401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002420.2CDS:Ec-00_002420.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2680226..2680528 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0024203UTR:Ec-00_002420.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 2680529..2681397 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002420.2 ID=Ec-00_002420.2|Name=Ec-00_002420.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=101bp
MRPRGLHLPRPRPEVSPMLLPRRFHLEAALQDTLASTAVHRGIGRRRSVR
AAARTPTRHAKAGVREEGASRPLPRHARASTSRYSFPSSLIHQEGMAPCR
*
back to top

spliced messenger RNA

>Ec-00_002420.2 ID=Ec-00_002420.2|Name=Ec-00_002420.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1489bp|location=Sequence derived from alignment at chr_00:2679338..2681397+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CCGGCACTTGCGGCCCGTGGACAAGGAGGGCAAGAGCCTCCACTTCAAAC
CCCGCCTCGACAAGGTTCTTGCGGCGGAGGGGAACAAAGGCGTTCCCCTC
GACCCAGCGCTGGCGGACTTGTTGCAAGGTCTCCTCAAGCTCGACTCGCG
ACATCGCTTGAGTGCAAGGGACGCCCTGGCGAGCCCTTACTTTGCGCCCA
GGCATGGGCAGCATGACGAAAGGCTGGATGCGTGGGTTACCTTGCGGGGT
GACCTAGATAAGGTGCAGATGGGAGTGGCTACGCCGGATCAGCTCCGCGG
CACGTTCGCCGCCGCCAATGCGCCCACGGGGCCTCCACCTCCCCCGCCCC
CGCCCAGAGGTCTCGCCGATGCTCCTCCCCCGCCGCTTTCACCTAGAGGC
GGCCCTTCAGGACACCCTAGCCAGCACGGCCGTCCACAGAGGGATAGGAA
GGAGGAGGAGCGTGCGGGCCGCCGCTCGCACGCCGACAAGGCACGCGAAA
GCAGGCGTGCGCGAGGAAGGGGCGTCGCGACCCCTTCCCCGCCACGCGAG
GGCCTCCACATCTCGGTACAGCTTCCCCTCAAGCCTGATCCACCAGGAGG
GTATGGCGCCGTGTCGGTAGAGAGGACTGGCAGAGCGGGGCGGGCAGATC
GGGGACGCCTCGAGGATCACGTCAAAACCCGTAGCCCAAGCCCCAGGGGG
GGTAGGAGGCGGAGTCCGGCGAACGGCAGGAGGGAGCGGGAGCGGGAGTG
GGAGCGGGAGCGGGAGCGGGAACGCGAACGAAGGGGAAGAAAAAGGGACA
GAGAGAGGGAAAGGGGTGTAACGAGGTCGCGCGAGCGCGAGTGGCAGGGC
GGTGAACGGTCGGGCAGGGACCCGCGCCGTGGTAGTCGTTGACGATACTT
ACAACACACCCGGCGCTATGGCATATAACACGGCGGGGTGTTCGGTCCGT
AAAGGGGTTGCTTGATGTAGGCGCGATCGCGATTGTAAGAGAAAATTAGT
TAAATCACCACGAATGAATGGCTATTGTTAGATTTGGGCTGACGGCTGTG
TCGGGAGGTGACACTGTGAAAAAGGGGCAGTGGTGTTGACTGTTGACTTG
GGGTCTTGGTTGGATCTTGCGATCATGCAGCCAGCGCACAAGAGAAACTT
AGTGGCGTGAGTATGGGTTGCGTGGAGTCGATTCCAAGTCCAGCGAAAGG
GTCAGGCATGTGATGAAATGTTGAGGTGCCGACAAAAAGTGGCGCCAAAG
CAAGAAAGGATTTGTGCCGGTGTGACGTCTTTTTGTTGTTCAGATCAAAT
GAGTTAGTTAGACCAGTTTCTTCTTCCTTTCGTAGTCGAGGGTGTGGTCT
CCGTTCAACTGATTGTCTGAGTTCCTGTGTGCTGCTGTGACTTGCTGGCC
CCGAAGCCGTGGCAACGAGTCACGCACTTCCCCCCCCCCCCATTTTTTGT
TTTTGGCGTGAGCACCCAGTAACACCCCGCCCAAAAAAC
back to top

protein sequence of Ec-00_002420.2

>Ec-00_002420.2 ID=Ec-00_002420.2|Name=Ec-00_002420.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=101bp
MRPRGLHLPRPRPEVSPMLLPRRFHLEAALQDTLASTAVHRGIGRRRSVR
AAARTPTRHAKAGVREEGASRPLPRHARASTSRYSFPSSLIHQEGMAPCR
*
back to top

mRNA from alignment at chr_00:2679338..2681397+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002420.2 ID=Ec-00_002420.2|Name=Ec-00_002420.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2060bp|location=Sequence derived from alignment at chr_00:2679338..2681397+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CCGGCACTTGCGGCCCGTGGACAAGGAGGGCAAGAGCCTCCACTTCAAAC
CCCGCCTCGACAAGGTACGGCAGCGTTGGTTCTCCGCAGTCTGTAGGCAT
GTCTCACGTCTCATGTCTCCTCAATGTAGAGTGTACACCAGTCTAGCTGG
AATGACTTGTTTCACGTTGCTTTGACTCAGCCGCAGCAGCTCTGGAAGGC
GAACCGATGCCTGTCTGGAAGAAACTTGTGTTTTTTATCGAGCTCGTGGC
CGCTAGGATTGCGCCCCCCCCCCCCCCCGCTTTTATCGTCTTCTGTTTTC
ATACCCTCACGCGTGCAACCACCAAACGATGACCTTCTTTCTTCGCTCGT
CTCGTTTGTCTCCGCCATGCAATCATGGAAAATCATGGTAAACTGAAACC
GAAGGTTCTTGCGGCGGAGGGGAACAAAGGCGTTCCCCTCGACCCAGCGC
TGGCGGACTTGTTGCAAGGTCTCCTCAAGCTCGACTCGCGACATCGCTTG
AGTGCAAGGGACGCCCTGGCGAGCCCTTACTTTGCGCCCAGGCATGGGCA
GCATGACGAAAGGGTGAGAGCACTGAGGAGTCCCGGTTGGATTTATTTTT
GTGTTGGACTTGCCGCTGCAGAGCTGTACAGATGATCCTGCACACAACCC
GGAGAAAATGCTGGTAAAGCTGCTGGCTCTGCCACCGATCGATTTCCTAT
CGTGTGTCAACCTAGTAACCTCGTCAATGTGTATCCCATTCATGGCCTCC
CTCTCGATCCTTGCCACATGACATGACGTGACACGGGCGTGCAGCTGGAT
GCGTGGGTTACCTTGCGGGGTGACCTAGATAAGGTGCAGATGGGAGTGGC
TACGCCGGATCAGCTCCGCGGCACGTTCGCCGCCGCCAATGCGCCCACGG
GGCCTCCACCTCCCCCGCCCCCGCCCAGAGGTCTCGCCGATGCTCCTCCC
CCGCCGCTTTCACCTAGAGGCGGCCCTTCAGGACACCCTAGCCAGCACGG
CCGTCCACAGAGGGATAGGAAGGAGGAGGAGCGTGCGGGCCGCCGCTCGC
ACGCCGACAAGGCACGCGAAAGCAGGCGTGCGCGAGGAAGGGGCGTCGCG
ACCCCTTCCCCGCCACGCGAGGGCCTCCACATCTCGGTACAGCTTCCCCT
CAAGCCTGATCCACCAGGAGGGTATGGCGCCGTGTCGGTAGAGAGGACTG
GCAGAGCGGGGCGGGCAGATCGGGGACGCCTCGAGGATCACGTCAAAACC
CGTAGCCCAAGCCCCAGGGGGGGTAGGAGGCGGAGTCCGGCGAACGGCAG
GAGGGAGCGGGAGCGGGAGTGGGAGCGGGAGCGGGAGCGGGAACGCGAAC
GAAGGGGAAGAAAAAGGGACAGAGAGAGGGAAAGGGGTGTAACGAGGTCG
CGCGAGCGCGAGTGGCAGGGCGGTGAACGGTCGGGCAGGGACCCGCGCCG
TGGTAGTCGTTGACGATACTTACAACACACCCGGCGCTATGGCATATAAC
ACGGCGGGGTGTTCGGTCCGTAAAGGGGTTGCTTGATGTAGGCGCGATCG
CGATTGTAAGAGAAAATTAGTTAAATCACCACGAATGAATGGCTATTGTT
AGATTTGGGCTGACGGCTGTGTCGGGAGGTGACACTGTGAAAAAGGGGCA
GTGGTGTTGACTGTTGACTTGGGGTCTTGGTTGGATCTTGCGATCATGCA
GCCAGCGCACAAGAGAAACTTAGTGGCGTGAGTATGGGTTGCGTGGAGTC
GATTCCAAGTCCAGCGAAAGGGTCAGGCATGTGATGAAATGTTGAGGTGC
CGACAAAAAGTGGCGCCAAAGCAAGAAAGGATTTGTGCCGGTGTGACGTC
TTTTTGTTGTTCAGATCAAATGAGTTAGTTAGACCAGTTTCTTCTTCCTT
TCGTAGTCGAGGGTGTGGTCTCCGTTCAACTGATTGTCTGAGTTCCTGTG
TGCTGCTGTGACTTGCTGGCCCCGAAGCCGTGGCAACGAGTCACGCACTT
CCCCCCCCCCCCATTTTTTGTTTTTGGCGTGAGCACCCAGTAACACCCCG
CCCAAAAAAC
back to top

Coding sequence (CDS) from alignment at chr_00:2679338..2681397+

>Ec-00_002420.2 ID=Ec-00_002420.2|Name=Ec-00_002420.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=303bp|location=Sequence derived from alignment at chr_00:2679338..2681397+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGCCCACGGGGCCTCCACCTCCCCCGCCCCCGCCCAGAGGTCTCGCC
GATGCTCCTCCCCCGCCGCTTTCACCTAGAGGCGGCCCTTCAGGACACCC
TAGCCAGCACGGCCGTCCACAGAGGGATAGGAAGGAGGAGGAGCGTGCGG
GCCGCCGCTCGCACGCCGACAAGGCACGCGAAAGCAGGCGTGCGCGAGGA
AGGGGCGTCGCGACCCCTTCCCCGCCACGCGAGGGCCTCCACATCTCGGT
ACAGCTTCCCCTCAAGCCTGATCCACCAGGAGGGTATGGCGCCGTGTCGG
TAG
back to top
Synonyms
The feature 'Ec-00_002420.2' has the following synonyms
Synonym
Esi1485_0001
Esi_1485_0001