Ec-00_002420.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002420.1
Unique NameEc-00_002420.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length286
Homology
[Close]
BLAST of Ec-00_002420.1 vs. uniprot
Match: D7FKT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT1_ECTSI)

HSP 1 Score: 464 bits (1194), Expect = 9.290e-161
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 1 
Query:    1 MENHGKLKPKVLAAEGNKGVPLDPALADLLQGLLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGRAGRADRGRLEDHVKTRSPSPRGGRRRSPANGRREXXXXXXXXXXXXXXXXXXXXXXXXXXGVTRSXXXEWQGGERSGRDPRRGSR 855
            MENHGKLKPKVLAAEGNKGVPLDPALADLLQGLLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGRAGRADRGRLEDHVKTRSPSPRGGRRRSPANGRREXXXXXXXXXXXXXXXXXXXXXXXXXXGVTRSXXXEWQGGERSGRDPRRGSR
Sbjct:    1 MENHGKLKPKVLAAEGNKGVPLDPALADLLQGLLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGRAGRADRGRLEDHVKTRSPSPRGGRRRSPANGRREXXXXXXXXXXXXXXXXXXXXXXXXXXGVTRSXXXEWQGGERSGRDPRRGSR 285
[Close]
BLAST of Ec-00_002420.1 vs. uniprot
Match: D8LK48_ECTSI (Possible Cdc2-related protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK48_ECTSI)

HSP 1 Score: 444 bits (1143), Expect = 1.190e-137
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1 
Query:   28 KVLAAEGNKGVPLDPALADLLQGLLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGRAGRADRGRLEDHVKTRSPSPRGGRRRSPANGRREXXXXXXXXXXXXXXXXXXXXXXXXXXGVTRSXXXEWQGGERSGRDPRRGSR 855
            KVLAAEGNKGVPLDPALADLLQGLLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGRAGRADRGRLEDHVKTRSPSPRGGRRRSPANGRREXXXXXXXXXXXXXXXXXXXXXXXXXXGVTRSXXXEWQGGERSGRDPRRGSR
Sbjct: 1623 KVLAAEGNKGVPLDPALADLLQGLLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGRAGRADRGRLEDHVKTRSPSPRGGRRRSPANGRREXXXXXXXXXXXXXXXXXXXXXXXXXXGVTRSXXXEWQGGERSGRDPRRGSR 1898
The following BLAST results are available for this feature:
BLAST of Ec-00_002420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKT1_ECTSI9.290e-161100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LK48_ECTSI1.190e-137100.00Possible Cdc2-related protein kinase n=2 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2679712..2681312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score444.9
Seed ortholog evalue2.9e-122
Seed eggNOG ortholog2880.D8LK48
Length1370
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K00924,ko:K06101,ko:K11423,ko:K16675
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04391,map00310,map04391
Hectar predicted targeting categoryother localisation
Gene idEc-00_002420.1
EggNOG free text desc.uterine gland development
EggNOG OGsCOG2940@1,KOG0594@1,KOG0594@2759,KOG1083@2759
EC2.1.1.43,2.3.1.225
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002420Ec-00_002420Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2679338..2681397 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002420.1.1Ec-00_002420.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2679712..2679900 +
Ec-00_002420.1.2Ec-00_002420.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2680132..2681312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002420.1CDS:Ec-00_002420.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2679712..2679900 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0024203UTR:Ec-00_002420.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 2680801..2681312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002420.1Ec-00_002420.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2679712..2680800 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002420.1 ID=Ec-00_002420.1|Name=Ec-00_002420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=286bp
MENHGKLKPKVLAAEGNKGVPLDPALADLLQGLLKLDSRHRLSARDALAS
PYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGP
PPPPPPPRGLADAPPPPLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHA
DKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGR
AGRADRGRLEDHVKTRSPSPRGGRRRSPANGRREREREWERERERERERR
GRKRDRERERGVTRSREREWQGGERSGRDPRRGSR*
back to top

spliced messenger RNA

>Ec-00_002420.1 ID=Ec-00_002420.1|Name=Ec-00_002420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1370bp|location=Sequence derived from alignment at chr_00:2679712..2681312+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAATCATGGTAAACTGAAACCGAAGGTTCTTGCGGCGGAGGGGAA
CAAAGGCGTTCCCCTCGACCCAGCGCTGGCGGACTTGTTGCAAGGTCTCC
TCAAGCTCGACTCGCGACATCGCTTGAGTGCAAGGGACGCCCTGGCGAGC
CCTTACTTTGCGCCCAGGCATGGGCAGCATGACGAAAGGCTGGATGCGTG
GGTTACCTTGCGGGGTGACCTAGATAAGGTGCAGATGGGAGTGGCTACGC
CGGATCAGCTCCGCGGCACGTTCGCCGCCGCCAATGCGCCCACGGGGCCT
CCACCTCCCCCGCCCCCGCCCAGAGGTCTCGCCGATGCTCCTCCCCCGCC
GCTTTCACCTAGAGGCGGCCCTTCAGGACACCCTAGCCAGCACGGCCGTC
CACAGAGGGATAGGAAGGAGGAGGAGCGTGCGGGCCGCCGCTCGCACGCC
GACAAGGCACGCGAAAGCAGGCGTGCGCGAGGAAGGGGCGTCGCGACCCC
TTCCCCGCCACGCGAGGGCCTCCACATCTCGGTACAGCTTCCCCTCAAGC
CTGATCCACCAGGAGGGTATGGCGCCGTGTCGGTAGAGAGGACTGGCAGA
GCGGGGCGGGCAGATCGGGGACGCCTCGAGGATCACGTCAAAACCCGTAG
CCCAAGCCCCAGGGGGGGTAGGAGGCGGAGTCCGGCGAACGGCAGGAGGG
AGCGGGAGCGGGAGTGGGAGCGGGAGCGGGAGCGGGAACGCGAACGAAGG
GGAAGAAAAAGGGACAGAGAGAGGGAAAGGGGTGTAACGAGGTCGCGCGA
GCGCGAGTGGCAGGGCGGTGAACGGTCGGGCAGGGACCCGCGCCGTGGTA
GTCGTTGACGATACTTACAACACACCCGGCGCTATGGCATATAACACGGC
GGGGTGTTCGGTCCGTAAAGGGGTTGCTTGATGTAGGCGCGATCGCGATT
GTAAGAGAAAATTAGTTAAATCACCACGAATGAATGGCTATTGTTAGATT
TGGGCTGACGGCTGTGTCGGGAGGTGACACTGTGAAAAAGGGGCAGTGGT
GTTGACTGTTGACTTGGGGTCTTGGTTGGATCTTGCGATCATGCAGCCAG
CGCACAAGAGAAACTTAGTGGCGTGAGTATGGGTTGCGTGGAGTCGATTC
CAAGTCCAGCGAAAGGGTCAGGCATGTGATGAAATGTTGAGGTGCCGACA
AAAAGTGGCGCCAAAGCAAGAAAGGATTTGTGCCGGTGTGACGTCTTTTT
GTTGTTCAGATCAAATGAGTTAGTTAGACCAGTTTCTTCTTCCTTTCGTA
GTCGAGGGTGTGGTCTCCGTTCAACTGATTGTCTGAGTTCCTGTGTGCTG
CTGTGACTTGCTGGCCCCGA
back to top

protein sequence of Ec-00_002420.1

>Ec-00_002420.1 ID=Ec-00_002420.1|Name=Ec-00_002420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=286bp
MENHGKLKPKVLAAEGNKGVPLDPALADLLQGLLKLDSRHRLSARDALAS
PYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGP
PPPPPPPRGLADAPPPPLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHA
DKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGR
AGRADRGRLEDHVKTRSPSPRGGRRRSPANGRREREREWERERERERERR
GRKRDRERERGVTRSREREWQGGERSGRDPRRGSR*
back to top

mRNA from alignment at chr_00:2679712..2681312+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002420.1 ID=Ec-00_002420.1|Name=Ec-00_002420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1601bp|location=Sequence derived from alignment at chr_00:2679712..2681312+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAAAATCATGGTAAACTGAAACCGAAGGTTCTTGCGGCGGAGGGGAA
CAAAGGCGTTCCCCTCGACCCAGCGCTGGCGGACTTGTTGCAAGGTCTCC
TCAAGCTCGACTCGCGACATCGCTTGAGTGCAAGGGACGCCCTGGCGAGC
CCTTACTTTGCGCCCAGGCATGGGCAGCATGACGAAAGGGTGAGAGCACT
GAGGAGTCCCGGTTGGATTTATTTTTGTGTTGGACTTGCCGCTGCAGAGC
TGTACAGATGATCCTGCACACAACCCGGAGAAAATGCTGGTAAAGCTGCT
GGCTCTGCCACCGATCGATTTCCTATCGTGTGTCAACCTAGTAACCTCGT
CAATGTGTATCCCATTCATGGCCTCCCTCTCGATCCTTGCCACATGACAT
GACGTGACACGGGCGTGCAGCTGGATGCGTGGGTTACCTTGCGGGGTGAC
CTAGATAAGGTGCAGATGGGAGTGGCTACGCCGGATCAGCTCCGCGGCAC
GTTCGCCGCCGCCAATGCGCCCACGGGGCCTCCACCTCCCCCGCCCCCGC
CCAGAGGTCTCGCCGATGCTCCTCCCCCGCCGCTTTCACCTAGAGGCGGC
CCTTCAGGACACCCTAGCCAGCACGGCCGTCCACAGAGGGATAGGAAGGA
GGAGGAGCGTGCGGGCCGCCGCTCGCACGCCGACAAGGCACGCGAAAGCA
GGCGTGCGCGAGGAAGGGGCGTCGCGACCCCTTCCCCGCCACGCGAGGGC
CTCCACATCTCGGTACAGCTTCCCCTCAAGCCTGATCCACCAGGAGGGTA
TGGCGCCGTGTCGGTAGAGAGGACTGGCAGAGCGGGGCGGGCAGATCGGG
GACGCCTCGAGGATCACGTCAAAACCCGTAGCCCAAGCCCCAGGGGGGGT
AGGAGGCGGAGTCCGGCGAACGGCAGGAGGGAGCGGGAGCGGGAGTGGGA
GCGGGAGCGGGAGCGGGAACGCGAACGAAGGGGAAGAAAAAGGGACAGAG
AGAGGGAAAGGGGTGTAACGAGGTCGCGCGAGCGCGAGTGGCAGGGCGGT
GAACGGTCGGGCAGGGACCCGCGCCGTGGTAGTCGTTGACGATACTTACA
ACACACCCGGCGCTATGGCATATAACACGGCGGGGTGTTCGGTCCGTAAA
GGGGTTGCTTGATGTAGGCGCGATCGCGATTGTAAGAGAAAATTAGTTAA
ATCACCACGAATGAATGGCTATTGTTAGATTTGGGCTGACGGCTGTGTCG
GGAGGTGACACTGTGAAAAAGGGGCAGTGGTGTTGACTGTTGACTTGGGG
TCTTGGTTGGATCTTGCGATCATGCAGCCAGCGCACAAGAGAAACTTAGT
GGCGTGAGTATGGGTTGCGTGGAGTCGATTCCAAGTCCAGCGAAAGGGTC
AGGCATGTGATGAAATGTTGAGGTGCCGACAAAAAGTGGCGCCAAAGCAA
GAAAGGATTTGTGCCGGTGTGACGTCTTTTTGTTGTTCAGATCAAATGAG
TTAGTTAGACCAGTTTCTTCTTCCTTTCGTAGTCGAGGGTGTGGTCTCCG
TTCAACTGATTGTCTGAGTTCCTGTGTGCTGCTGTGACTTGCTGGCCCCG
A
back to top

Coding sequence (CDS) from alignment at chr_00:2679712..2681312+

>Ec-00_002420.1 ID=Ec-00_002420.1|Name=Ec-00_002420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=858bp|location=Sequence derived from alignment at chr_00:2679712..2681312+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAAAATCATGGTAAACTGAAACCGAAGGTTCTTGCGGCGGAGGGGAA
CAAAGGCGTTCCCCTCGACCCAGCGCTGGCGGACTTGTTGCAAGGTCTCC
TCAAGCTCGACTCGCGACATCGCTTGAGTGCAAGGGACGCCCTGGCGAGC
CCTTACTTTGCGCCCAGGCATGGGCAGCATGACGAAAGGCTGGATGCGTG
GGTTACCTTGCGGGGTGACCTAGATAAGGTGCAGATGGGAGTGGCTACGC
CGGATCAGCTCCGCGGCACGTTCGCCGCCGCCAATGCGCCCACGGGGCCT
CCACCTCCCCCGCCCCCGCCCAGAGGTCTCGCCGATGCTCCTCCCCCGCC
GCTTTCACCTAGAGGCGGCCCTTCAGGACACCCTAGCCAGCACGGCCGTC
CACAGAGGGATAGGAAGGAGGAGGAGCGTGCGGGCCGCCGCTCGCACGCC
GACAAGGCACGCGAAAGCAGGCGTGCGCGAGGAAGGGGCGTCGCGACCCC
TTCCCCGCCACGCGAGGGCCTCCACATCTCGGTACAGCTTCCCCTCAAGC
CTGATCCACCAGGAGGGTATGGCGCCGTGTCGGTAGAGAGGACTGGCAGA
GCGGGGCGGGCAGATCGGGGACGCCTCGAGGATCACGTCAAAACCCGTAG
CCCAAGCCCCAGGGGGGGTAGGAGGCGGAGTCCGGCGAACGGCAGGAGGG
AGCGGGAGCGGGAGTGGGAGCGGGAGCGGGAGCGGGAACGCGAACGAAGG
GGAAGAAAAAGGGACAGAGAGAGGGAAAGGGGTGTAACGAGGTCGCGCGA
GCGCGAGTGGCAGGGCGGTGAACGGTCGGGCAGGGACCCGCGCCGTGGTA
GTCGTTGA
back to top
Synonyms
The feature 'Ec-00_002420.1' has the following synonyms
Synonym
Esi1485_0001
Esi_1485_0001