Ec-00_002410.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002410.1
Unique NameEc-00_002410.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length109
Homology
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BLAST of Ec-00_002410.1 vs. uniprot
Match: D7FKT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT0_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 5.770e-70
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 MADSRPASRLLHHRISIARAVPRTNAMNLLAFYQLPESRWATRKLAEPQKLESDLESAYKSKMAVWGIIFMSSALGMVLGMAMLVRWCSRRHTDRESAMVHALETSRG 324
            MADSRPASRLLHHRISIARAVPRTNAMNLLAFYQLPESRWATRKLAEPQKLESDLESAYKSKMAVWGIIFMSSALGMVLGMAMLVRWCSRRHTDRESAMVHALETSRG
Sbjct:    1 MADSRPASRLLHHRISIARAVPRTNAMNLLAFYQLPESRWATRKLAEPQKLESDLESAYKSKMAVWGIIFMSSALGMVLGMAMLVRWCSRRHTDRESAMVHALETSRG 108
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BLAST of Ec-00_002410.1 vs. uniprot
Match: D7FHM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM7_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.900e-12
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:  103 LPESRWATRKLAEPQKLESDLESAYKSKMAVWGIIFMSSALGMVLGMAMLV 255
            L  SR   R+LAE QKLES+LESAYKS MAVWG+IFM+S LGM L MAML+
Sbjct:   32 LTASRRTARQLAERQKLESELESAYKSTMAVWGVIFMASDLGMALVMAMLM 82
The following BLAST results are available for this feature:
BLAST of Ec-00_002410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKT0_ECTSI5.770e-70100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHM7_ECTSI1.900e-1270.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2678531..2678919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length327
Hectar predicted targeting categorysignal anchor
Gene idEc-00_002410.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002410Ec-00_002410Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2678531..2678919 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002410.1.1Ec-00_002410.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2678531..2678614 +
Ec-00_002410.1.2Ec-00_002410.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2678677..2678919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002410.1CDS:Ec-00_002410.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2678531..2678614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002410.1Ec-00_002410.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2678531..2678919 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002410.1 ID=Ec-00_002410.1|Name=Ec-00_002410.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=109bp
MADSRPASRLLHHRISIARAVPRTNAMNLLAFYQLPESRWATRKLAEPQK
LESDLESAYKSKMAVWGIIFMSSALGMVLGMAMLVRWCSRRHTDRESAMV
HALETSRG*
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spliced messenger RNA

>Ec-00_002410.1 ID=Ec-00_002410.1|Name=Ec-00_002410.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=327bp|location=Sequence derived from alignment at chr_00:2678531..2678919+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGACTCACGCCCCGCTTCGCGCTTACTGCACCACCGCATCAGCAT
CGCCAGGGCCGTACCCAGGACCAACGCCATGAACCTTCTGGCGTTCTACC
AACTTCCGGAATCCCGGTGGGCCACGAGGAAGTTGGCAGAACCCCAGAAG
CTAGAATCGGATTTGGAGTCCGCCTACAAGTCGAAGATGGCAGTATGGGG
CATTATCTTCATGTCCTCGGCCCTGGGCATGGTCCTGGGCATGGCGATGC
TGGTACGGTGGTGCAGTAGGCGTCACACCGACCGTGAGTCCGCCATGGTT
CACGCTCTCGAGACCTCGAGAGGATGA
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protein sequence of Ec-00_002410.1

>Ec-00_002410.1 ID=Ec-00_002410.1|Name=Ec-00_002410.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=109bp
MADSRPASRLLHHRISIARAVPRTNAMNLLAFYQLPESRWATRKLAEPQK
LESDLESAYKSKMAVWGIIFMSSALGMVLGMAMLVRWCSRRHTDRESAMV
HALETSRG*
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mRNA from alignment at chr_00:2678531..2678919+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002410.1 ID=Ec-00_002410.1|Name=Ec-00_002410.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=389bp|location=Sequence derived from alignment at chr_00:2678531..2678919+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGACTCACGCCCCGCTTCGCGCTTACTGCACCACCGCATCAGCAT
CGCCAGGGCCGTACCCAGGACCAACGCCATGAACGTGAGTGACGCCCCAT
ACGGCCATCTTCGACTTTTATTGGCCGACTCCAACTCTAATCCCAGCTTC
TGGCGTTCTACCAACTTCCGGAATCCCGGTGGGCCACGAGGAAGTTGGCA
GAACCCCAGAAGCTAGAATCGGATTTGGAGTCCGCCTACAAGTCGAAGAT
GGCAGTATGGGGCATTATCTTCATGTCCTCGGCCCTGGGCATGGTCCTGG
GCATGGCGATGCTGGTACGGTGGTGCAGTAGGCGTCACACCGACCGTGAG
TCCGCCATGGTTCACGCTCTCGAGACCTCGAGAGGATGA
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Coding sequence (CDS) from alignment at chr_00:2678531..2678919+

>Ec-00_002410.1 ID=Ec-00_002410.1|Name=Ec-00_002410.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=327bp|location=Sequence derived from alignment at chr_00:2678531..2678919+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGACTCACGCCCCGCTTCGCGCTTACTGCACCACCGCATCAGCAT
CGCCAGGGCCGTACCCAGGACCAACGCCATGAACCTTCTGGCGTTCTACC
AACTTCCGGAATCCCGGTGGGCCACGAGGAAGTTGGCAGAACCCCAGAAG
CTAGAATCGGATTTGGAGTCCGCCTACAAGTCGAAGATGGCAGTATGGGG
CATTATCTTCATGTCCTCGGCCCTGGGCATGGTCCTGGGCATGGCGATGC
TGGTACGGTGGTGCAGTAGGCGTCACACCGACCGTGAGTCCGCCATGGTT
CACGCTCTCGAGACCTCGAGAGGATGA
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Synonyms
The feature 'Ec-00_002410.1' has the following synonyms
Synonym
Esi1484_0001
Esi_1484_0001