Ec-00_002400.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002400.1
Unique NameEc-00_002400.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length57
Homology
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BLAST of Ec-00_002400.1 vs. uniprot
Match: A0A6H5JFV9_9PHAE (EF1_GNE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFV9_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.290e-25
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 MATACDISFDEMAMALSYISLGGTAAAPASSARGLPSLAPVKQEKKAAKKPEADDD 168
            MATACDISFDEMAMALSYISLGGTAAAPASSARGLPSLAPVKQEKKAAKKPEADD+
Sbjct:    1 MATACDISFDEMAMALSYISLGGTAAAPASSARGLPSLAPVKQEKKAAKKPEADDE 56
The following BLAST results are available for this feature:
BLAST of Ec-00_002400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFV9_9PHAE2.290e-2598.21EF1_GNE domain-containing protein n=3 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2672401..2672817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue6.7e-15
Seed eggNOG ortholog2880.D8LCD3
Preferred nameCARS
Length171
KEGG rclassRC00055,RC00523
KEGG koko:K01866,ko:K01868,ko:K01873,ko:K01875,ko:K01883,ko:K03232,ko:K15410
KEGG ReactionR02918,R03650,R03662,R03663,R03665,R08218
KEGG Pathwayko00970,ko05168,map00970,map05168
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_002400.1
GOsGO:0000049,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005853,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006414,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG2092@1,KOG1668@2759
EC6.1.1.1,6.1.1.11,6.1.1.16,6.1.1.3,6.1.1.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002400Ec-00_002400Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2672401..2672817 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002400.1.1Ec-00_002400.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2672401..2672568 +
Ec-00_002400.1.2Ec-00_002400.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2672815..2672817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002400.1CDS:Ec-00_002400.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2672401..2672568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002400.1Ec-00_002400.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2672401..2672817 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002400.1 ID=Ec-00_002400.1|Name=Ec-00_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=57bp
MATACDISFDEMAMALSYISLGGTAAAPASSARGLPSLAPVKQEKKAAKK
PEADDD*
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spliced messenger RNA

>Ec-00_002400.1 ID=Ec-00_002400.1|Name=Ec-00_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=171bp|location=Sequence derived from alignment at chr_00:2672401..2672817+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCGCTTGCGATATTTCGTTCGATGAGATGGCCATGGCCTTGAG
CTACATTTCCCTTGGTGGCACCGCGGCGGCACCAGCGAGCTCCGCGCGAG
GGTTGCCATCCTTGGCACCAGTGAAGCAGGAGAAGAAGGCCGCCAAGAAG
CCCGAGGCGGACGACGATTAG
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protein sequence of Ec-00_002400.1

>Ec-00_002400.1 ID=Ec-00_002400.1|Name=Ec-00_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=57bp
MATACDISFDEMAMALSYISLGGTAAAPASSARGLPSLAPVKQEKKAAKK
PEADDD*
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mRNA from alignment at chr_00:2672401..2672817+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002400.1 ID=Ec-00_002400.1|Name=Ec-00_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=417bp|location=Sequence derived from alignment at chr_00:2672401..2672817+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCACCGCTTGCGATATTTCGTTCGATGAGATGGCCATGGCCTTGAG
CTACATTTCCCTTGGTGGCACCGCGGCGGCACCAGCGAGCTCCGCGCGAG
GGTTGCCATCCTTGGCACCAGTGAAGCAGGAGAAGAAGGCCGCCAAGAAG
CCCGAGGCGGACGACGATGTGAGAAGAGAAGACAGTCTCTCGTCTTGCAT
AGGTTGTTGATGCCCGGGGGTGATGTTGGCTGATGCGTCGGTCCGGTGTC
GCCATTGGTAGGGTTTAGGCTCGCCCCGCGGTCAACTCTGCTGAACTTCT
TGTGTGTGAGAACATGCGGGTCGACGTGTGCACCTGCACTAATATAGGCT
ATCCCTCGGTCCGTTTCGCGGCTGATCATCCTCTCTGGCATCTATGATGC
GAAGCTGGAAACAGTAG
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Coding sequence (CDS) from alignment at chr_00:2672401..2672817+

>Ec-00_002400.1 ID=Ec-00_002400.1|Name=Ec-00_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=171bp|location=Sequence derived from alignment at chr_00:2672401..2672817+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCACCGCTTGCGATATTTCGTTCGATGAGATGGCCATGGCCTTGAG
CTACATTTCCCTTGGTGGCACCGCGGCGGCACCAGCGAGCTCCGCGCGAG
GGTTGCCATCCTTGGCACCAGTGAAGCAGGAGAAGAAGGCCGCCAAGAAG
CCCGAGGCGGACGACGATTAG
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Synonyms
The feature 'Ec-00_002400.1' has the following synonyms
Synonym
Esi1480_0001
Esi_1480_0001