Ec-00_002390.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-00_002390.1 vs. uniprot
Match: D7FKS8_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS8_ECTSI) HSP 1 Score: 566 bits (1459), Expect = 5.690e-203 Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 1 Query: 1 MVEDHIKNNVVRVPAAGGSGKGAYFQQAVGIPQGSVLSGLLCNYFFFGHIEKRLLGDVLDGGVPERPHRPPGGGGARGLSARAVGLERRSDGIGGGSGSQGAGATSSFAPPAGGKRGRPGERXXXXXXXXXXXXXXXXXXXXXGERPPKFARISPACSRLGDAAAPDSDRASRGGVLGVPNGRGGGGSDGNRGPHETPQQQSCRNTANQNGRGHGSYGPVGGPHRGERCRLGGNGDDEQRGRGPAEREESGGESPFPDPEGDCTLLRQVDDFLLESDDGISTSKAKAESFVRVMHDEVKTGDWGFSVHQAKVTR 942 MVEDHIKNNVVRVPAAGGSGKGAYFQQAVGIPQGSVLSGLLCNYFFFGHIEKRLLGDVLDGGVPERPHRPPGGGGARGLSARAVGLERRSDGIGGGSGSQGAGATSSFAPPAGGKRGRPGERXXXXXXXXXXXXXXXXXXXXXGERPPKFARISPACSRLGDAAAPDSDRASRGGVLGVPNGRGGGGSDGNRGPHETPQQQSCRNTANQNGRGHGSYGPVGGPHRGERCRLGGNGDDEQRGRGPAEREESGGESPFPDPEGDCTLLRQVDDFLLESDDGISTSKAKAESFVRVMHDEVKTGDWGFSVHQAKVTR Sbjct: 1 MVEDHIKNNVVRVPAAGGSGKGAYFQQAVGIPQGSVLSGLLCNYFFFGHIEKRLLGDVLDGGVPERPHRPPGGGGARGLSARAVGLERRSDGIGGGSGSQGAGATSSFAPPAGGKRGRPGERXXXXXXXXXXXXXXXXXXXXXGERPPKFARISPACSRLGDAAAPDSDRASRGGVLGVPNGRGGGGSDGNRGPHETPQQQSCRNTANQNGRGHGSYGPVGGPHRGERCRLGGNGDDEQRGRGPAEREESGGESPFPDPEGDCTLLRQVDDFLLESDDGISTSKAKAESFVRVMHDEVKTGDWGFSVHQAKVTR 314
BLAST of Ec-00_002390.1 vs. uniprot
Match: D7G4G6_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G6_ECTSI) HSP 1 Score: 539 bits (1388), Expect = 4.290e-184 Identity = 303/312 (97.12%), Postives = 303/312 (97.12%), Query Frame = 1 Query: 1 MVEDHIKNNVVRVPAAGGSGKGAYFQQAVGIPQGSVLSGLLCNYFFFGHIEKRLLGDVLDGGVPERPHRPPGGGGARGLSARAVGLERRSDGIGGGSGSQGAGATSSFAPPAGGKRGRPGERXXXXXXXXXXXXXXXXXXXXXGERPPKFARISPACSRLGDAAAPDSDRASRGGVLGVPNGRGGGGSDGNRGPHETPQQQSCRNTANQNGRGHGSYGPVGGPHRGERCRLGGNGDDEQRGRGPAEREESGGESPFPDPEGDCTLLRQVDDFLLESDDGISTSKAKAESFVRVMHDEVKTGDWGFSVHQAKV 936 MVEDHIKNNVVRVPAAGGSGKGAYFQQAVGIPQGSVLSGLLCNYFFFGHIEKRLLGDVLDGGVPERPHRPPGGGGARGLSARAVGLERRSDGIGGGSGSQG GATSSFAPPAGGKRGRPGERXXXXXXXXXXXXXXXXXXX GERPPKFARISPACSRLGDAAAPDSDRASRGGVLGVPNGRGGGGSDGNRGPHETPQQQSCRNTANQNGRGHGSYGPVGGPHRGERCRLGGNGDDEQRGRGPAEREESGGESPFPDPEGDCTLLRQVDDFLL ISTSKAKAESFVRVMHDEVKTGDWGFSVHQAK Sbjct: 1 MVEDHIKNNVVRVPAAGGSGKGAYFQQAVGIPQGSVLSGLLCNYFFFGHIEKRLLGDVLDGGVPERPHRPPGGGGARGLSARAVGLERRSDGIGGGSGSQGEGATSSFAPPAGGKRGRPGERXXXXXXXXXXXXXXXXXXX--GERPPKFARISPACSRLGDAAAPDSDRASRGGVLGVPNGRGGGGSDGNRGPHETPQQQSCRNTANQNGRGHGSYGPVGGPHRGERCRLGGNGDDEQRGRGPAEREESGGESPFPDPEGDCTLLRQVDDFLL-----ISTSKAKAESFVRVMHDEVKTGDWGFSVHQAKT 305
BLAST of Ec-00_002390.1 vs. uniprot
Match: A0A6H5K5W1_9PHAE (Telomerase reverse transcriptase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W1_9PHAE) HSP 1 Score: 457 bits (1175), Expect = 1.520e-154 Identity = 270/318 (84.91%), Postives = 274/318 (86.16%), Query Frame = 1 Query: 1 MVEDHIKNNVVRVPAAGGSGKGAYFQQAVGIPQGSVLSGLLCNYFFFGHIEKRLLGDVLDGGVPERPHRPPGGGGARGLSARAVGLERRSDGIGGGSGSQGAGATSSFAPPAGGKRGRPGERXXXXXXXXXXXXXXXXXXXXX------GERPPKFARISPACSRLGDAAAPDSDRASRGGVLGVPNGRGGGGSDGNRGPHETPQQQSCRNTANQNGRGHGSYGPVGGPHRGERCRLGGNGDDEQRGRGPAEREESGGESPFPDPEGDCTLLRQVDDFLLESDDGISTSKAKAESFVRVMHDEVKTGDWGFSVHQAKV 936 MVEDHIK+NVVRVPAAGGSGKGAY QQAVGIPQGSVLSGLLCNYFF GHIEKRLLGDVLDGGVPERPH PPGGGGARGLS+RAVGLE RSDGIG GSG Q GA SSF PP GGKR RPGER XXXXX XXXXXXXXXXX GERPPKFARISP+CS L DAAAPDSDRASRGGVLGVP GR GGGSDGNRGPHETPQQQS RNTANQNGRGHGSYGPVGG GERCRLGG+ DD QRGR P E EESG E PFPDPEGDCTLLRQVDDFLL ISTSKAKAESFVRVMHDEVKTGDWGFSVHQAK Sbjct: 78 MVEDHIKHNVVRVPAAGGSGKGAYLQQAVGIPQGSVLSGLLCNYFF-GHIEKRLLGDVLDGGVPERPHLPPGGGGARGLSSRAVGLESRSDGIGAGSGGQDEGAASSFGPPTGGKRARPGERERXXXXXPVTXXXXXXXXXXXXXXXXXGERPPKFARISPSCSCLSDAAAPDSDRASRGGVLGVPTGRDGGGSDGNRGPHETPQQQSRRNTANQNGRGHGSYGPVGGARGGERCRLGGDVDDGQRGRSPVE-EESGEERPFPDPEGDCTLLRQVDDFLL-----ISTSKAKAESFVRVMHDEVKTGDWGFSVHQAKT 388
BLAST of Ec-00_002390.1 vs. uniprot
Match: A0A0E9NB64_SAICN (Telomerase reverse transcriptase n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NB64_SAICN) HSP 1 Score: 57.8 bits (138), Expect = 1.470e-5 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1 Query: 1 MVEDHIKNNVVRVPAAGGSGKGAYFQQAVGIPQGSVLSGLLCNYFFFGHIEKRLLGDV 174 MVE+HI+NN+V++ Y++Q GIPQGSVLS +LCN FF+G +EK+ LG + Sbjct: 795 MVEEHIQNNLVKIGRK-------YYRQRTGIPQGSVLSTILCN-FFYGDLEKKHLGFI 844
BLAST of Ec-00_002390.1 vs. uniprot
Match: A0A0F4Z1F5_TALEM (Telomerase reverse transcriptase n=1 Tax=Rasamsonia emersonii CBS 393.64 TaxID=1408163 RepID=A0A0F4Z1F5_TALEM) HSP 1 Score: 57.4 bits (137), Expect = 2.040e-5 Identity = 29/56 (51.79%), Postives = 42/56 (75.00%), Query Frame = 1 Query: 1 MVEDHIKNNVVRVPAAGGSGKGAYFQQAVGIPQGSVLSGLLCNYFFFGHIEKRLLG 168 ++E+H++NN+V++ GK YF+Q GIPQGSVLS LLCN FF+G +E+ +LG Sbjct: 871 LLEEHVRNNLVKI------GK-KYFRQRNGIPQGSVLSALLCN-FFYGELEREVLG 918
BLAST of Ec-00_002390.1 vs. uniprot
Match: A0A8H7DS37_PLEOS (Telomerase reverse transcriptase n=1 Tax=Pleurotus ostreatus TaxID=5322 RepID=A0A8H7DS37_PLEOS) HSP 1 Score: 55.5 bits (132), Expect = 7.650e-5 Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1 Query: 1 MVEDHIKNNVVRVPAAGGSGKGAYFQQAVGIPQGSVLSGLLCNYFFFGHIEKRLLGDVLDG 183 ++E+HI N+V++ + Y+QQ VGIPQGS+LS LLC+ FF+G +EKR V +G Sbjct: 539 LLEEHITENIVKIGSH-------YYQQTVGIPQGSILSTLLCS-FFYGDMEKRFPAAVSEG 591 The following BLAST results are available for this feature:
BLAST of Ec-00_002390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_002390.1 ID=Ec-00_002390.1|Name=Ec-00_002390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=315bpback to top spliced messenger RNA >Ec-00_002390.1 ID=Ec-00_002390.1|Name=Ec-00_002390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=945bp|location=Sequence derived from alignment at chr_00:2659176..2660960+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. ATGGTCGAGGACCACATCAAGAACAACGTCGTCCGGGTGCCGGCTGCAGGback to top protein sequence of Ec-00_002390.1 >Ec-00_002390.1 ID=Ec-00_002390.1|Name=Ec-00_002390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=315bp MVEDHIKNNVVRVPAAGGSGKGAYFQQAVGIPQGSVLSGLLCNYFFFGHIback to top mRNA from alignment at chr_00:2659176..2660960+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-00_002390.1 ID=Ec-00_002390.1|Name=Ec-00_002390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1785bp|location=Sequence derived from alignment at chr_00:2659176..2660960+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_00:2659176..2660960+ >Ec-00_002390.1 ID=Ec-00_002390.1|Name=Ec-00_002390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=945bp|location=Sequence derived from alignment at chr_00:2659176..2660960+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-00_002390.1' has the following synonyms
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