Ec-00_002360.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002360.1
Unique NameEc-00_002360.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length109
Homology
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BLAST of Ec-00_002360.1 vs. uniprot
Match: D7FKK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK6_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.120e-67
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 MIDWTDGITFGGVMDRVLHQLEMAGVTGSEQLVKRLRGRAARDYSRLRAKAGIASTVDLTDEDIFSSAVDAAPGAIEEARLVAASFRVLGDGVFSREPPVASCSVLKS 324
            MIDWTDGITFGGVMDRVLHQLEMAGVTGSEQLVKRLRGRAARDYSRLRAKAGIASTVDLTDEDIFSSAVDAAPGAIEEARLVAASFRVLGDGVFSREPPVASCSVLKS
Sbjct:    1 MIDWTDGITFGGVMDRVLHQLEMAGVTGSEQLVKRLRGRAARDYSRLRAKAGIASTVDLTDEDIFSSAVDAAPGAIEEARLVAASFRVLGDGVFSREPPVASCSVLKS 108
The following BLAST results are available for this feature:
BLAST of Ec-00_002360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKK6_ECTSI1.120e-67100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2625433..2626855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length327
Hectar predicted targeting categoryother localisation
Gene idEc-00_002360.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002360Ec-00_002360Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2625433..2626855 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002360.1.4Ec-00_002360.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2625433..2625509 -
Ec-00_002360.1.3Ec-00_002360.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2625655..2625760 -
Ec-00_002360.1.2Ec-00_002360.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2626152..2626247 -
Ec-00_002360.1.1Ec-00_002360.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2626808..2626855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002360.1CDS:Ec-00_002360.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2625433..2625509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002360.1Ec-00_002360.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2625433..2626855 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002360.1 ID=Ec-00_002360.1|Name=Ec-00_002360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=109bp
MIDWTDGITFGGVMDRVLHQLEMAGVTGSEQLVKRLRGRAARDYSRLRAK
AGIASTVDLTDEDIFSSAVDAAPGAIEEARLVAASFRVLGDGVFSREPPV
ASCSVLKS*
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spliced messenger RNA

>Ec-00_002360.1 ID=Ec-00_002360.1|Name=Ec-00_002360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=327bp|location=Sequence derived from alignment at chr_00:2625433..2626855- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGACTGGACCGACGGGATAACCTTCGGTGGCGTCATGGATCGGGT
GCTGCATCAGCTGGAAATGGCGGGGGTCACCGGGTCGGAGCAGCTCGTGA
AGCGTCTGCGGGGGAGGGCCGCGAGGGATTACAGTCGCCTGAGGGCGAAG
GCCGGCATAGCTTCCACCGTCGACCTCACGGACGAGGACATCTTCAGCAG
CGCAGTGGACGCTGCACCGGGAGCTATCGAAGAGGCGAGGCTTGTGGCAG
CATCGTTTAGGGTGCTAGGTGACGGTGTTTTCAGTCGAGAACCCCCCGTA
GCTTCCTGTTCGGTGTTGAAGTCTTGA
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protein sequence of Ec-00_002360.1

>Ec-00_002360.1 ID=Ec-00_002360.1|Name=Ec-00_002360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=109bp
MIDWTDGITFGGVMDRVLHQLEMAGVTGSEQLVKRLRGRAARDYSRLRAK
AGIASTVDLTDEDIFSSAVDAAPGAIEEARLVAASFRVLGDGVFSREPPV
ASCSVLKS*
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mRNA from alignment at chr_00:2625433..2626855-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002360.1 ID=Ec-00_002360.1|Name=Ec-00_002360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1423bp|location=Sequence derived from alignment at chr_00:2625433..2626855- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATCGACTGGACCGACGGGATAACCTTCGGTGGCGTCATGGATCGGGT
GAGCAGCGAGAGGGCCGGGGCACGCGCCCGAATCTAAGACATCATTGTGC
TTGGAAGCTGCTGCTTCTGTGGTATTCGTGTGGGTGCGGGTTTTTGTGCG
TGCTGTGCAGCATGGCCAGGCGCGGAGCCGAAGCTACGGTGGTGCTGTTT
CATCTTTGCCTGGGAGATGTGCTGCGACTCGAATAGGTTTTGTATGCTAC
AGAACGCCGTAAACAACCTGCTGCTGTAGCAGCGGCAGCGGTACCGTTCG
TGTCAGTGAGGTCGGTTTCACGGAGACTACTGTCCATGTGCTTTGGGGGT
GAAAGGAGGGAGGGGACGGGGGGATGAAAACGCCGAGGCAGCAGAGCTTG
GGGATAGTGCACTGTCGCGTGGGCCTTGAGGCGAATAAACCGCGCGCACG
TAACATGAAAGTCCTGTGCGAAGAAGCCGTTTCTTCATTATGCTGCGAGA
GCAAGAGCCCCGGCAAATGACAAATGACGCCATGGCGCATCTACATGCAG
CGTAGTTCTTGGCGAACCGAAATTTTTTCTTGCCCCGATTTTCGACACGC
CGGAACAGGTGCTGCATCAGCTGGAAATGGCGGGGGTCACCGGGTCGGAG
CAGCTCGTGAAGCGTCTGCGGGGGAGGGCCGCGAGGGATTACAGTCGCCT
GAGGGTGCGTGTACATGATGAGGGGGTGGTGGTGGTGGTTGTCAACGTTT
CGTGGGATGTGGGGGGGGTATTTTGTGGTATGATTTGTGCGCTGCTCGCC
GTGTGCGTTGGTTTGCGTTGGTTGTTTTGCTTGATGCTGTTTCAGCTGTG
TTGGTGTATGGTGCACACACGACCATTCCCTGCAACTTTCCACGGGTGTT
CTTCGCGAAGATCGGTTCTCGATGTTGATAATAGGTGATTGTTGTCACAC
AATGCCTAGCGGTTGTGTACATGGCCGTACTTGTCGTACGCGCCACCCTA
GACTGTCACCTTTTCTTCCCTCCTATACCAACCCCACCGACCCACACCTG
TACCCCTCTCCCCCGCCCGACTCCCGCGGCACACTACTTGACCAGGCGAA
GGCCGGCATAGCTTCCACCGTCGACCTCACGGACGAGGACATCTTCAGCA
GCGCAGTGGACGCTGCACCGGGAGCTATCGAAGAGGCGAGGCTTGTGGCA
GGTGAGCAAGCAGACAGCAGTGCCTGTGGACACTCGATCGCGTTGCACGT
GGTTTGTGTGTCTGATCATGCCTGTTCTCGTTTTCGCTACAATTCCTTGA
TACGGCACCCCCTATTTGTTCACGTCACCGCGTTGTACACGCGCAGCATC
GTTTAGGGTGCTAGGTGACGGTGTTTTCAGTCGAGAACCCCCCGTAGCTT
CCTGTTCGGTGTTGAAGTCTTGA
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Coding sequence (CDS) from alignment at chr_00:2625433..2626855-

>Ec-00_002360.1 ID=Ec-00_002360.1|Name=Ec-00_002360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=327bp|location=Sequence derived from alignment at chr_00:2625433..2626855- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATCGACTGGACCGACGGGATAACCTTCGGTGGCGTCATGGATCGGGT
GCTGCATCAGCTGGAAATGGCGGGGGTCACCGGGTCGGAGCAGCTCGTGA
AGCGTCTGCGGGGGAGGGCCGCGAGGGATTACAGTCGCCTGAGGGCGAAG
GCCGGCATAGCTTCCACCGTCGACCTCACGGACGAGGACATCTTCAGCAG
CGCAGTGGACGCTGCACCGGGAGCTATCGAAGAGGCGAGGCTTGTGGCAG
CATCGTTTAGGGTGCTAGGTGACGGTGTTTTCAGTCGAGAACCCCCCGTA
GCTTCCTGTTCGGTGTTGAAGTCTTGA
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Synonyms
The feature 'Ec-00_002360.1' has the following synonyms
Synonym
Esi1452_0001
Esi_1452_0001