Ec-00_002310.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002310.1
Unique NameEc-00_002310.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length88
Homology
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BLAST of Ec-00_002310.1 vs. uniprot
Match: D7FK69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK69_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 6.560e-57
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    1 MVNFKLLHLMCEAEGGSVLHSQHLDGFKCSAMGYGLDPKPLPRTRLRVTPRSAGEIFPSANVKNCMSMACNGLHSRVVVSFPMRMLE 261
            MVNFKLLHLMCEAEGGSVLHSQHLDGFKCSAMGYGLDPKPLPRTRLRVTPRSAGEIFPSANVKNCMSMACNGLHSRVVVSFPMRMLE
Sbjct:  111 MVNFKLLHLMCEAEGGSVLHSQHLDGFKCSAMGYGLDPKPLPRTRLRVTPRSAGEIFPSANVKNCMSMACNGLHSRVVVSFPMRMLE 197
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BLAST of Ec-00_002310.1 vs. uniprot
Match: A0A6H5KXC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.580e-19
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 MVNFKLLHLMCEAEGGSVLHSQHLDGFKCSAMGYGLDPKPLPRTRL 138
            MVNFKLLHLMCEAEGGSVLHSQHLDGFKCSAM YGLDPK  P+ R+
Sbjct:    1 MVNFKLLHLMCEAEGGSVLHSQHLDGFKCSAMAYGLDPKAYPQFRM 46
[Close]
BLAST of Ec-00_002310.1 vs. uniprot
Match: D8LQH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH4_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.770e-19
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 MVNFKLLHLMCEAEGGSVLHSQHLDGFKCSAMGYGLDPKPLPRTRL 138
            MVNFKLLHLMCEAEGGSVLHSQHLDGFKCSAMGYGLDPK  P+ R+
Sbjct:  324 MVNFKLLHLMCEAEGGSVLHSQHLDGFKCSAMGYGLDPKAYPQFRM 369
The following BLAST results are available for this feature:
BLAST of Ec-00_002310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK69_ECTSI6.560e-57100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXC2_9PHAE1.580e-1986.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQH4_ECTSI2.770e-1989.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2577339..2578437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue2.5e-16
Seed eggNOG ortholog2880.D8LQH4
Length264
Hectar predicted targeting categoryother localisation
Gene idEc-00_002310.1
EggNOG OGs28JR9@1,2QS4P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002310Ec-00_002310Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2577339..2578437 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002310.1.3Ec-00_002310.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2577339..2577485 -
Ec-00_002310.1.2Ec-00_002310.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2577685..2577798 -
Ec-00_002310.1.1Ec-00_002310.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2578435..2578437 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002310.1CDS:Ec-00_002310.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2577339..2577485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002310.1Ec-00_002310.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2577339..2578437 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002310.1 ID=Ec-00_002310.1|Name=Ec-00_002310.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=88bp
MVNFKLLHLMCEAEGGSVLHSQHLDGFKCSAMGYGLDPKPLPRTRLRVTP
RSAGEIFPSANVKNCMSMACNGLHSRVVVSFPMRMLE*
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spliced messenger RNA

>Ec-00_002310.1 ID=Ec-00_002310.1|Name=Ec-00_002310.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=264bp|location=Sequence derived from alignment at chr_00:2577339..2578437- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAAACTTCAAGTTGTTGCACCTCATGTGCGAAGCCGAGGGCGGTTC
TGTGCTTCACTCGCAGCACTTGGACGGGTTCAAGTGTTCGGCTATGGGCT
ACGGACTCGACCCCAAGCCCCTACCTCGTACCAGACTACGTGTTACACCT
CGCTCCGCGGGTGAAATCTTCCCTAGCGCTAACGTCAAGAACTGCATGTC
TATGGCTTGCAATGGCCTGCATAGCCGAGTCGTCGTGAGCTTCCCAATGC
GCATGCTGGAGTAG
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protein sequence of Ec-00_002310.1

>Ec-00_002310.1 ID=Ec-00_002310.1|Name=Ec-00_002310.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=88bp
MVNFKLLHLMCEAEGGSVLHSQHLDGFKCSAMGYGLDPKPLPRTRLRVTP
RSAGEIFPSANVKNCMSMACNGLHSRVVVSFPMRMLE*
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mRNA from alignment at chr_00:2577339..2578437-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002310.1 ID=Ec-00_002310.1|Name=Ec-00_002310.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1099bp|location=Sequence derived from alignment at chr_00:2577339..2578437- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCAAGTTTTTTTCTTTTCGGATTACTGCATATTTGTGATCTTTCGCA
TGACGAACGAAACCACTTTCGTGTTTTTTTTTGTTTGTATGGATCTTTCC
GGTCGCCCCGGTAGTCTAGTTGGTATCCTCGAAAACCTTCTGGTGGCCAG
GGTCAGGGGTTCGAATCCCGGTGTCAAACGAGCTTTTCTTGCAGAGTGAG
TTTTTCTCTCGCTTGCGTTCCTGGCGTGGGTGGAAAGCGCTATTTCGTGT
GTACACAGAGGGAAGAGAGTGCTGCACTCTTCTCGCATAAAAAATCGAAG
GCAAAGCACCCCAGGAGGGGACGGTAGAGAGGGGCTCTTCTGTGTGACCA
CGGGTTGGAGTACACGGCACAAATGCTGTGAGCGCTGATTTGAAGTGAAA
ACAAACAAAAAAGAAAAACAGATCTTTCTCCACAATGCATCACTAAAACA
CCCCAATTTCGGTTGCATGCAGATGCATACATCTCTGCTACCCCCCTCAT
TCTGGCCACACACCCTGAGGCACCGGTCTCTGCTTCCTCGAGTTCCTCGG
GAGGCATAATTGTCGGTACGTTTATTTCGGTCGCGAATCTTGACCGCAAC
CACGGCCGGCTGGCTGCGCGATTCTTTTGCTTGGTGCAGGTAAACTTCAA
GTTGTTGCACCTCATGTGCGAAGCCGAGGGCGGTTCTGTGCTTCACTCGC
AGCACTTGGACGGGTTCAAGTGTTCGGCTATGGGCTACGGACTCGACCCC
AAGGTCAGTTTCCGTGGTTCATTTTTCTGGTGTTGCATGTTTTCATGGTA
ATTTTCCGCGTGGCCTCACAGCAAGCCCAGACAAGCGCACGCCTACTTTT
GGCTGGACGCTGACCATTGTGCGGTTTCGGGGTGTTCTTAGCTTGGCACC
TGTGCTGTCCATGTGATGGATACGACGTAGATGCCTTTTTGCGCGAAAAC
AGCCCCTACCTCGTACCAGACTACGTGTTACACCTCGCTCCGCGGGTGAA
ATCTTCCCTAGCGCTAACGTCAAGAACTGCATGTCTATGGCTTGCAATGG
CCTGCATAGCCGAGTCGTCGTGAGCTTCCCAATGCGCATGCTGGAGTAG
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Coding sequence (CDS) from alignment at chr_00:2577339..2578437-

>Ec-00_002310.1 ID=Ec-00_002310.1|Name=Ec-00_002310.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=264bp|location=Sequence derived from alignment at chr_00:2577339..2578437- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTAAACTTCAAGTTGTTGCACCTCATGTGCGAAGCCGAGGGCGGTTC
TGTGCTTCACTCGCAGCACTTGGACGGGTTCAAGTGTTCGGCTATGGGCT
ACGGACTCGACCCCAAGCCCCTACCTCGTACCAGACTACGTGTTACACCT
CGCTCCGCGGGTGAAATCTTCCCTAGCGCTAACGTCAAGAACTGCATGTC
TATGGCTTGCAATGGCCTGCATAGCCGAGTCGTCGTGAGCTTCCCAATGC
GCATGCTGGAGTAG
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Synonyms
The feature 'Ec-00_002310.1' has the following synonyms
Synonym
Esi1419_0001
Esi_1419_0001