Ec-00_002160.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002160.1
Unique NameEc-00_002160.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length157
Homology
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BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 311 bits (798), Expect = 3.120e-99
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 2 
Query:   65 MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 532
            MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTIT+GFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  409 MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 564
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BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 259 bits (661), Expect = 4.560e-77
Identity = 127/155 (81.94%), Postives = 137/155 (88.39%), Query Frame = 2 
Query:   68 TVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 532
            TV+DPS++DDKDYYGNKRLE AGQLISLLFEDLFKRFN +LKR AD  L+K N A  +DI   L GS  IT GF HAIS+GNWV+KRFK+DRQGVTQVLSRLS+IS LGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  382 TVLDPSSLDDKDYYGNKRLESAGQLISLLFEDLFKRFNGDLKRYADTCLAKQNHATPWDISGMLAGSMNITQGFIHAISTGNWVVKRFKMDRQGVTQVLSRLSYISCLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 536
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BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A482SPL4_9ARCH (DNA-directed RNA polymerase subunit beta n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPL4_9ARCH)

HSP 1 Score: 254 bits (649), Expect = 1.350e-76
Identity = 124/155 (80.00%), Postives = 139/155 (89.68%), Query Frame = 2 
Query:   68 TVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 532
            TV D S +DDKDYYGNKR+ELAG L+SLLFEDLFKRFNS+LKR ADMVLSKPNRA  FDI KF+ G T IT GF HAIS+G+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct:  132 TVQDRSLLDDKDYYGNKRIELAGSLLSLLFEDLFKRFNSDLKRQADMVLSKPNRAGGFDIVKFIRGDT-ITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 285
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BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 251 bits (641), Expect = 1.080e-74
Identity = 122/155 (78.71%), Postives = 137/155 (88.39%), Query Frame = 2 
Query:   68 TVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 532
            TV D S +DDKDYYGNKRLELAG LISLLFEDLFKRFNS+LKR  DM+LSKPNRA  FD+ KF+   T IT GF HAIS+G+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct:  237 TVRDRSLLDDKDYYGNKRLELAGSLISLLFEDLFKRFNSDLKRQVDMILSKPNRAGGFDVMKFMRADT-ITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 390
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BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A7S2WKY6_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WKY6_9STRA)

HSP 1 Score: 233 bits (594), Expect = 3.220e-74
Identity = 116/156 (74.36%), Postives = 131/156 (83.97%), Query Frame = 2 
Query:   65 MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 532
            M  +     DDKDYYGNKRLELAG L+SLLFEDLFK FN +LKR AD VLSK NRA AFD+ K +  S TIT G   AIS+GNWVLKRF++DR GVTQVLSRLS++S+LGMMTRV+SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:   79 MVHLGKEPYDDKDYYGNKRLELAGNLLSLLFEDLFKHFNRDLKRQADQVLSKANRAQAFDVIKCIR-SDTITMGMVMAISTGNWVLKRFRMDRAGVTQVLSRLSYVSALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 233
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BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A7S0RUB9_9CHLO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RUB9_9CHLO)

HSP 1 Score: 238 bits (607), Expect = 7.490e-74
Identity = 114/156 (73.08%), Postives = 135/156 (86.54%), Query Frame = 2 
Query:   65 MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 532
              V+DPS VDDKDYYGNKRLELAGQL++LLFEDLFKR N++L++  D+ LSK NRA  FDI K +    T+++G  HAISSGNW +KRF+++R+GVTQVLSRLSFISSLGMMTR+ SQF+K RKVSGPRALQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   21 QAVMDPSKVDDKDYYGNKRLELAGQLLALLFEDLFKRLNADLRKQVDIALSKANRATQFDIVKCIR-QDTLSHGLEHAISSGNWTVKRFRMERKGVTQVLSRLSFISSLGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNL 175
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BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A7S3PBU7_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBU7_9STRA)

HSP 1 Score: 233 bits (593), Expect = 1.600e-73
Identity = 116/171 (67.84%), Postives = 140/171 (81.87%), Query Frame = 2 
Query:   23 REDRLHGTHRPEGAMTV-IDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 532
            RE  ++  H     + V +    +DDKDYYGNKRLELAG L+SLLFEDLFK F+ +LKR AD+VLSKPN A AFD+ K +   T ITNG  +AI++GNWVLKRF++DR GVTQVLSRLS++S+LGMMTR++SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:   82 REKAIYIGHIVRRVLLVHLGKMPLDDKDYYGNKRLELAGNLLSLLFEDLFKTFSKDLKRQADLVLSKPNLAQAFDVTKTIRPDT-ITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 251
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BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A059LAC5_9CHLO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LAC5_9CHLO)

HSP 1 Score: 226 bits (577), Expect = 2.340e-73
Identity = 111/153 (72.55%), Postives = 133/153 (86.93%), Query Frame = 2 
Query:   74 IDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 532
            +DP+ VD++DYYGNKRLELAG L++LLFEDLFKR N++L+R A+  LSK +RA AFD  K L  S T+T G  HA+SSGNW ++RF+++R+GVTQVLSRLSFIS+LGMMTRV SQF+K RKVSGPRALQPSQWGM+CPADTPEGESCGLVKNL
Sbjct:    4 LDPTLVDNRDYYGNKRLELAGGLLALLFEDLFKRMNADLRRAAEAALSKASRANAFDAIKVLR-SDTLTYGLEHALSSGNWNIRRFRMERRGVTQVLSRLSFISALGMMTRVTSQFEKTRKVSGPRALQPSQWGMVCPADTPEGESCGLVKNL 155
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BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A2G8KFE2_STIJA (DNA-directed RNA polymerase n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KFE2_STIJA)

HSP 1 Score: 231 bits (588), Expect = 2.610e-73
Identity = 112/152 (73.68%), Postives = 131/152 (86.18%), Query Frame = 2 
Query:   77 DPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 532
            D   VDD+DYYGNKRLELAGQLISLLFEDLFK+FNSELK+ AD ++ KP+RAA FD+ K +     ITNG   AIS+GNW LKRFK++R GVTQ+LSRLS+IS+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   81 DSFKVDDRDYYGNKRLELAGQLISLLFEDLFKKFNSELKKIADQIIPKPSRAALFDVVKHMR-QDKITNGLNTAISTGNWSLKRFKMERAGVTQILSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 231
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BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A822DRV6_9NEOB (DNA-directed RNA polymerase n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822DRV6_9NEOB)

HSP 1 Score: 228 bits (581), Expect = 3.670e-73
Identity = 113/148 (76.35%), Postives = 130/148 (87.84%), Query Frame = 2 
Query:   89 VDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 532
            VDD+DYYGNKRLELAGQL+SLLFEDLFK+FNSE+K+ AD V+ K  RAA FD+ K +     ITNG  +AIS+GNW LKRFK+DRQGVTQVLSRLSFIS+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   14 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMR-QDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 159
The following BLAST results are available for this feature:
BLAST of Ec-00_002160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAF8_9PHAE3.120e-9999.36DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A835Z565_9STRA4.560e-7781.94DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A482SPL4_9ARCH1.350e-7680.00DNA-directed RNA polymerase subunit beta n=1 Tax=a... [more]
A0A7S3H3I2_9STRA1.080e-7478.71DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A7S2WKY6_9STRA3.220e-7474.36DNA-directed RNA polymerase (Fragment) n=2 Tax=Euc... [more]
A0A7S0RUB9_9CHLO7.490e-7473.08DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyr... [more]
A0A7S3PBU7_9STRA1.600e-7367.84DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp... [more]
A0A059LAC5_9CHLO2.340e-7372.55DNA-directed RNA polymerase (Fragment) n=1 Tax=Hel... [more]
A0A2G8KFE2_STIJA2.610e-7373.68DNA-directed RNA polymerase n=1 Tax=Stichopus japo... [more]
A0A822DRV6_9NEOB3.670e-7376.35DNA-directed RNA polymerase n=1 Tax=Ranitomeya imi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2468640..2470720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.2
Seed ortholog evalue1.3e-63
Seed eggNOG ortholog115417.EPrPW00000024458
Preferred namePOLR3B
Length536
KEGG rclassRC02795
KEGG koko:K03010,ko:K03021
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181
Hectar predicted targeting categoryother localisation
Gene idEc-00_002160.1
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009553,GO:0009561,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048229,GO:0048518,GO:0048583,GO:0048584,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0051239,GO:0051240,GO:0055029,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed RNA polymerase
EggNOG OGs1MDZF@121069,COG0085@1,KOG0215@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002160Ec-00_002160Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2468640..2470720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002160.1Ec-00_002160.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2468640..2470655 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002160.1.4Ec-00_002160.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2468640..2468816 -
Ec-00_002160.1.3Ec-00_002160.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2469306..2469415 -
Ec-00_002160.1.2Ec-00_002160.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2470202..2470349 -
Ec-00_002160.1.1Ec-00_002160.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2470620..2470720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002160.1CDS:Ec-00_002160.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2468640..2468816 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0021605UTR:Ec-00_002160.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 2470656..2470720 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002160.1 ID=Ec-00_002160.1|Name=Ec-00_002160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=157bp
MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVL
SKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVL
SRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESC
GLVKNLG
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spliced messenger RNA

>Ec-00_002160.1 ID=Ec-00_002160.1|Name=Ec-00_002160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=536bp|location=Sequence derived from alignment at chr_00:2468640..2470720- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGTAGGTGGGCTACGACTTCCGCGCGAAGATCGTCTACACGGCACACATC
GTCCGGAGGGTGCTCATGACCGTCATCGACCCCTCCACCGTGGACGATAA
GGACTACTACGGGAACAAGCGTCTGGAGCTCGCGGGTCAGCTGATCTCGC
TGCTGTTTGAGGACCTCTTCAAGCGTTTCAACAGCGAGCTCAAGAGGAAC
GCAGACATGGTGCTGTCCAAGCCCAACCGCGCCGCGGCTTTCGACATTGG
CAAGTTTCTGGAGGGTTCCACCACGATCACGAACGGATTCACGCACGCCA
TCTCATCGGGAAACTGGGTCCTGAAGCGGTTCAAGGTCGACAGGCAGGGG
GTTACGCAGGTGCTCTCACGGCTGAGCTTCATCTCGTCCCTAGGCATGAT
GACGAGGGTGGACTCCCAGTTCCAGAAAGAGCGCAAGGTCTCGGGGCCCC
GCGCTCTGCAGCCCAGCCAGTGGGGTATGCTCTGCCCCGCGGACACCCCC
GAGGGAGAAAGCTGCGGCCTCGTCAAGAACCTCGGT
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protein sequence of Ec-00_002160.1

>Ec-00_002160.1 ID=Ec-00_002160.1|Name=Ec-00_002160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=157bp
MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVL
SKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVL
SRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESC
GLVKNLG
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mRNA from alignment at chr_00:2468640..2470720-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002160.1 ID=Ec-00_002160.1|Name=Ec-00_002160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2081bp|location=Sequence derived from alignment at chr_00:2468640..2470720- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGTAGGTGGGCTACGACTTCCGCGCGAAGATCGTCTACACGGCACACATC
GTCCGGAGGGTGCTCATGACCGTCATCGACCCCTCCACCGTGGACGATAA
GGTTCGCAAAGTCGATCGAAGATGAGGATAGCTACTAACCTAAAAGTTGT
TTACACGATACATGTATGTTCGTTTTTTTTTGGGGGGGGGAAGGGCAGGG
GCTGGAGACCGAGAAACGAGCGACGATGACTAGGACGGGGGGCCGCATTT
TTAACGTGATTGTGGAGGTTGTATGCATACAGAATAGCAAATACATCCTT
TTGGCGAGACGTCAGTACTGTATGTTTTGTTGGCCAACGAACCCGTTACA
TCGCTCGTTCCGAACGCCTAGGACTACTACGGGAACAAGCGTCTGGAGCT
CGCGGGTCAGCTGATCTCGCTGCTGTTTGAGGACCTCTTCAAGCGTTTCA
ACAGCGAGCTCAAGAGGAACGCAGACATGGTGCTGTCCAAGCCCAACCGC
GCCGCGGCTTTCGACATTGGTACAAATATATATTACGTGGGTTTTTTAAT
TGTCCTTTCGGTTCATTCTTCGGGTGTGCTCTTGTTGATGGCACACGAAT
GGAATGTTGTTTGTTTTCAACCATCTTTTAGTGAAAGGATGTTTTTGGTT
CACAACCTACCTAACGATTGTTGGATATCCTCATGTGTTTTTTTTTTGTC
CAATATTTCCGATTCGTTGTTGGATTTGTTCTGGTTGGTGCACATGAATG
GCGTGGTGACGTTTTCAGAAACGTCTTTTATTGCGCAAGACGTCCGTATT
AAGCTCTCGAGTGATTGCCGGGTATCCTTGCGTTGCGTACGTACATAAGT
TTGGTCACGACACGGCTAGGTACATCTCTACGCGGTGCCTACGACGGTCA
CGTACATTGTTGCACGCCACCAACCACAGTTATGCCGGACGGGTTATTTT
CTCTACAGGGGGCTTAAAAGACGTAGGCTAGCTTGCCTTCGTGACTTGTT
CATATTTTCGTTGGCTGCTCCTTTTTTTGCGTCCAACGTCTGATTTCTGG
AAGTGTGTACCCTTTTTTGAGCAGTCGGCCTGTGACCGTGGAAGGTGTTG
GACCGGTACGGATATTAGAAGGTACTGAGCACAGACCGGAACGGTTTTTA
ATGTGAAAACAACAAACAACAACAATCCCTTTAGCTGTGCGTGTAGGCTA
TGGCAAGTGGTGTTGTGCAAAAACCAAGTTCAAACGTGGGCGAACGCACG
TGTTCGTTTTGCTTTTTCCGTGTGTTTTTCCTGGAATGCACACATTTGCT
AACAGGCAAGTTTCTGGAGGGTTCCACCACGATCACGAACGGATTCACGC
ACGCCATCTCATCGGGAAACTGGGTCCTGAAGCGGTTCAAGGTCGACAGG
CAGGGGGTTACGCAGGTATCTTGCGACTTTACCAGGGTTATGCAACCCGG
TGTTTTTTTCTTTTGCTGTCGATGCTGCTACTGCTTGGGCGTCATGTCAT
GTGTGGCAGACGGGCGGGCGCCTTCTTGTGTTGGACGGGCTCTGCTCTCT
GAGTGGCGTGTGGATCCAGGTGTCCGTGTCCGGCGTGTTGCGCGTTGTGG
TTTGTTAAGCAGATCTAGGTCGTCGCGAAGGGAGGGAATCGTCCTCAGCG
GTCTTTCGGGTATGTGTGACCACCCCCCTCTTTAGCGGTCATCTTCGCCA
TCTCGGCACCCGTTTTCTTTTGTGCGCTTGGCTTGTGGCCACGGCCGAGA
GAGCCGCCTTGAGACGAGAGGGCTATTACGAGAGGACCAACAGCAATCAT
CAACCATGGGAATGAAACCGACCACCAACAACAGACTCAACGAAAGCCCA
CAACATCAACAAAAAAATACGAAACCAATAGCATCATGTTACAATATAAC
TCAGGTGCTCTCACGGCTGAGCTTCATCTCGTCCCTAGGCATGATGACGA
GGGTGGACTCCCAGTTCCAGAAAGAGCGCAAGGTCTCGGGGCCCCGCGCT
CTGCAGCCCAGCCAGTGGGGTATGCTCTGCCCCGCGGACACCCCCGAGGG
AGAAAGCTGCGGCCTCGTCAAGAACCTCGGT
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Coding sequence (CDS) from alignment at chr_00:2468640..2470720-

>Ec-00_002160.1 ID=Ec-00_002160.1|Name=Ec-00_002160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=471bp|location=Sequence derived from alignment at chr_00:2468640..2470720- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACCGTCATCGACCCCTCCACCGTGGACGATAAGGACTACTACGGGAA
CAAGCGTCTGGAGCTCGCGGGTCAGCTGATCTCGCTGCTGTTTGAGGACC
TCTTCAAGCGTTTCAACAGCGAGCTCAAGAGGAACGCAGACATGGTGCTG
TCCAAGCCCAACCGCGCCGCGGCTTTCGACATTGGCAAGTTTCTGGAGGG
TTCCACCACGATCACGAACGGATTCACGCACGCCATCTCATCGGGAAACT
GGGTCCTGAAGCGGTTCAAGGTCGACAGGCAGGGGGTTACGCAGGTGCTC
TCACGGCTGAGCTTCATCTCGTCCCTAGGCATGATGACGAGGGTGGACTC
CCAGTTCCAGAAAGAGCGCAAGGTCTCGGGGCCCCGCGCTCTGCAGCCCA
GCCAGTGGGGTATGCTCTGCCCCGCGGACACCCCCGAGGGAGAAAGCTGC
GGCCTCGTCAAGAACCTCGGT
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Synonyms
The feature 'Ec-00_002160.1' has the following synonyms
Synonym
Esi1346_0001
Esi_1346_0001