Ec-00_002100.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002100.1
Unique NameEc-00_002100.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length85
Homology
[Close]
BLAST of Ec-00_002100.1 vs. uniprot
Match: D8LEF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF6_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.040e-54
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 3 
Query:   57 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRKGF 308
            MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRKGF
Sbjct:    1 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRKGF 84
[Close]
BLAST of Ec-00_002100.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 9.010e-46
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 3 
Query:   57 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 302
            MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTL GHRDRVYS DFHPTEPKLVSSSADKTVLIWEPNRKRNSRK
Sbjct:  520 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYSTDFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 601
[Close]
BLAST of Ec-00_002100.1 vs. uniprot
Match: A0A835Z281_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z281_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.610e-34
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 3 
Query:   48 GGGMGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNR--KRNSRK 302
            GGG+GY+D G DW HSLVLATGSADG+I+ FD+SKG+G ++QTL GH DRVY+  FHPTEP+LVS SAD+TV IW P++  +RN RK
Sbjct:   38 GGGIGYEDSGKDWAHSLVLATGSADGNIYTFDMSKGEGGDLQTLRGHNDRVYAVHFHPTEPRLVSGSADQTVRIWGPSKGGRRNGRK 124
[Close]
BLAST of Ec-00_002100.1 vs. uniprot
Match: A0A2V3IL28_9FLOR (WD repeat-containing protein 5B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL28_9FLOR)

HSP 1 Score: 82.4 bits (202), Expect = 7.560e-14
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 3 
Query:   72 LGNDWQHSLVLATGSADGSIHVFDL--SKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIW 272
            +G+  + SLVLA+GSADG+++VFD+  S G G  +QTL+GH+D  YS DFHP EP L S SAD  + IW
Sbjct:  484 IGDAIESSLVLASGSADGNVYVFDVGGSAGTGTLVQTLIGHKDIAYSVDFHPCEPILASCSADSKINIW 552
[Close]
BLAST of Ec-00_002100.1 vs. uniprot
Match: A0A8H7Q4N1_MORIS (GED domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q4N1_MORIS)

HSP 1 Score: 80.9 bits (198), Expect = 2.270e-13
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 3 
Query:   87 QHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRKGF 308
            + S++LATGS+D  ++++++ +   + +Q L GH DRVY+A+FHPTEP L S SAD T+ +W P   R  +KG 
Sbjct:  422 EKSVLLATGSSDPYVYLYNIGENTAELMQRLEGHTDRVYAANFHPTEPILASCSADYTIKVWGPGAPRGKKKGI 495
[Close]
BLAST of Ec-00_002100.1 vs. uniprot
Match: R7QRT1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRT1_CHOCR)

HSP 1 Score: 80.5 bits (197), Expect = 3.340e-13
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 3 
Query:   72 LGNDWQHSLVLATGSADGSIHVFDLS--KGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNR 284
            +G   Q+SL+LA+GSADG+I +FD+    G G  +QTL GH+DRVY  DFHP EP L S SAD  + IW+  R
Sbjct:  482 IGGPIQNSLILASGSADGNICLFDVGGRPGTGALLQTLEGHKDRVYGVDFHPNEPILASCSADCGIKIWQSFR 554
[Close]
BLAST of Ec-00_002100.1 vs. uniprot
Match: A0A168T094_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168T094_ABSGL)

HSP 1 Score: 76.6 bits (187), Expect = 6.130e-12
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 3 
Query:   87 QHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSR 299
            + S++LATGSAD  ++++++ + + + +Q + GH DRVYS +FHPTEP L S SAD TV IW P+ K   +
Sbjct:  439 EKSVLLATGSADPYVYLYNVGEDRSELMQRMEGHTDRVYSVNFHPTEPILASGSADFTVKIWGPSFKSKKK 509
[Close]
BLAST of Ec-00_002100.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV)

HSP 1 Score: 75.1 bits (183), Expect = 1.960e-11
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 3 
Query:   57 MGYKD--LGNDWQHSLVLATGSADGSIHVFDLS-------KGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKR 290
            +GY+D  L       ++LATGSAD +I++ D++        G    +Q L GH DRVYS DFHP+EP L S+SAD TV IW P   R
Sbjct:  407 LGYQDRELQEKPDEVMLLATGSADNTIYLHDVTCRRGYGLNGSTSLLQRLEGHTDRVYSVDFHPSEPILASASADFTVKIWLPRTSR 493
[Close]
BLAST of Ec-00_002100.1 vs. uniprot
Match: A0A2P6MV32_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MV32_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 7.220e-10
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:   93 SLVLATGSADGSIHVFDLSKGQGDEI--QTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIW 272
            S +LATGSAD  +++F++S  +G  I  Q L GH D+VYS +FHP +P L S+SAD TV +W
Sbjct:  488 SFLLATGSADSQVYIFNVSGVEGSHILLQRLEGHTDKVYSVNFHPFDPILASASADGTVRLW 549
[Close]
BLAST of Ec-00_002100.1 vs. uniprot
Match: A0A1Y2GT49_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GT49_9FUNG)

HSP 1 Score: 70.1 bits (170), Expect = 1.010e-9
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 3 
Query:   87 QHSLVLATGSADGSIHVFDLSKGQG--DEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKR 290
            + SL+LA+GS D  +++FD+S G G  + +Q L GH DRVY  DFHP +  L S SAD TV +W    KR
Sbjct:  521 ESSLLLASGSMDPYVYLFDVSAGDGQYELLQKLPGHTDRVYDVDFHPIDHVLASGSADFTVKVWGRASKR 590
The following BLAST results are available for this feature:
BLAST of Ec-00_002100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LEF6_ECTSI1.040e-54100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNQ7_9PHAE9.010e-4697.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z281_9STRA1.610e-3466.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2V3IL28_9FLOR7.560e-1455.07WD repeat-containing protein 5B n=1 Tax=Gracilario... [more]
A0A8H7Q4N1_MORIS2.270e-1344.59GED domain-containing protein n=1 Tax=Mortierella ... [more]
R7QRT1_CHOCR3.340e-1353.42Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A168T094_ABSGL6.130e-1246.48Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
T0QW05_SAPDV1.960e-1145.98Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2P6MV32_9EUKA7.220e-1051.61Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A1Y2GT49_9FUNG1.010e-948.57WD40-repeat-containing domain protein n=1 Tax=Lobo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2399803..2401432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog5786.XP_003291002.1
Length927
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
Gene idEc-00_002100.1
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs3XD7W@554915,KOG0266@1,KOG0266@2759
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002100Ec-00_002100Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2399803..2401432 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002100.1.2Ec-00_002100.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2399803..2400570 -
Ec-00_002100.1.1Ec-00_002100.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2401274..2401432 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0021003UTR:Ec-00_002100.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 2399803..2400417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002100.1CDS:Ec-00_002100.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2400418..2400570 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0021005UTR:Ec-00_002100.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 2401376..2401432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002100.1Ec-00_002100.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2400418..2401375 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002100.1 ID=Ec-00_002100.1|Name=Ec-00_002100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=85bp
MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYS
ADFHPTEPKLVSSSADKTVLIWEPNRKRNSRKGF*
back to top

spliced messenger RNA

>Ec-00_002100.1 ID=Ec-00_002100.1|Name=Ec-00_002100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=927bp|location=Sequence derived from alignment at chr_00:2399803..2401432- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGGGGTAAAGGGGGCTCCGGGAGTGGTGGAAAGGGAGGGCGCGGGGG
GGAGGGTATGGGGTACAAGGACCTCGGAAACGACTGGCAGCACTCGTTGG
TGCTGGCAACCGGCAGCGCGGACGGGAGCATTCACGTCTTCGACTTGTCC
AAGGGCCAGGGCGATGAAATTCAGACGTTGCTAGGGCACAGAGATAGGGT
TTACTCGGCTGACTTCCACCCCACCGAGCCGAAGCTCGTCTCTTCCAGCG
CGGACAAGACTGTCCTGATATGGGAGCCGAACAGGAAGCGCAACTCACGG
AAAGGATTTTGATCAGCAGATGTGTGAGGGTGCGCGACTTGGCATTTCAG
AGAGCAAAAATTGATTTGTGGACTACGTAGATTTTGATTCGGAGATTTCC
CTTCGTAGGGTTTTTTTAATGGGCGCAGAAAACTCAATCCCCTAGGGGGC
TTGAGAATTAGAGGATCAACAAATTTTATGTACTTAGTAGTTGATCAATT
GCGCGCCCGTGCGCGTGTGTCAGCTTCTCCCTTTGTCTCTTTTTTTTTTG
TCTTCTTCTCGAAGAATGTCGACCGGCGGAGTCACGACTGAAAAAGCCCC
ACCAACGAATTGAATGCACCGAAGGGACGTGTGTCATCTTCCCCCCCCGT
ACATCCCCCCCCGAGTCTTGTTGATTGGGTTTACCCGAACACGTAACAAT
GTTGTTGTCGAACTGGAGGGGGGCTTGCTGGAACGGAAGGTATCCCCCCC
CCCCGGAGAAGTTAGGTGGCGTTCTCCTTATGGAACCCACCCGAAGTTGT
ATCGCCCCAGCTGATTGGACGAACACGCATAAGCTGGACCTGCAGGCAGC
GTTGAGGCCCGTCGTGGTAGTGTTGGGGTCCGTTTGTTGAAAGGCGTCCT
CCATCTGGTGGGCTGTAGACATGGGGG
back to top

protein sequence of Ec-00_002100.1

>Ec-00_002100.1 ID=Ec-00_002100.1|Name=Ec-00_002100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=85bp
MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYS
ADFHPTEPKLVSSSADKTVLIWEPNRKRNSRKGF*
back to top

mRNA from alignment at chr_00:2399803..2401432-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002100.1 ID=Ec-00_002100.1|Name=Ec-00_002100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1630bp|location=Sequence derived from alignment at chr_00:2399803..2401432- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GGGGGGGGTAAAGGGGGCTCCGGGAGTGGTGGAAAGGGAGGGCGCGGGGG
GGAGGGTATGGGGTACAAGGACCTCGGAAACGACTGGCAGCACTCGTTGG
TGCTGGCAACCGGCAGCGCGGACGGGAGCATTCACGTCTTCGACTTGTCC
AAGGGCCAGGTCAGTCGGTGTGTTGTGTTGTTGACATCGTCGTCAGTAAA
GCAGGCAATTGTTGAAACGGACGGGGTGTAATTGTTGCGGGGATAAGGGA
TTAAGGAGAAAGGTTAGGTTAACTCGGTTGTGTAGGTCTCTCGATGGAGA
GTTCCCGACGCGGTCGCGATTTTTGTTTTCTTCTGTCGATGGTGCCTATT
TAGAGCAGGTTTCCGTGTCCAGAGGGGATGGTTAGAAACAGTCATGAAAA
TGCCACCACCAAGACCCCAAGAATACGTGTCGTGGGGAGGTACGCGGCTT
TGTCAGATGACTCGGTGGATCTTGAGTCGTGGGTTACAAACCAGGGCAAG
CCTGACGTCTACCGTTGCATCAGACACACAGCAGCTTCGCCGACTACAAC
GTAGCCTGCTTTCATGTACGGTGGGTGCACACCTGTCTTGGCTCACGCCT
CTTTCGTCCCCCTTTTCCTATCGAGAGGCGTGTCTACTGTGTCCTCCACA
CCACCACACACACACGAAGAGTATCGAGCCCGTAGCGAGTTCTTCGGGCT
CAAGACAACGCACAAAAAATTGGATAGCTAGGTACGGCGCAGGAGATCAT
GCTTGTTCGTCCCTCTTTGACTGTTTATACTGCGATCACGACCCCCCCTC
ACGATAATTTTCCCTTTCTCTGGGACCCCTTGTGCCCGGCGTGATGCGTT
GGCAACACACAGGGCGATGAAATTCAGACGTTGCTAGGGCACAGAGATAG
GGTTTACTCGGCTGACTTCCACCCCACCGAGCCGAAGCTCGTCTCTTCCA
GCGCGGACAAGACTGTCCTGATATGGGAGCCGAACAGGAAGCGCAACTCA
CGGAAAGGATTTTGATCAGCAGATGTGTGAGGGTGCGCGACTTGGCATTT
CAGAGAGCAAAAATTGATTTGTGGACTACGTAGATTTTGATTCGGAGATT
TCCCTTCGTAGGGTTTTTTTAATGGGCGCAGAAAACTCAATCCCCTAGGG
GGCTTGAGAATTAGAGGATCAACAAATTTTATGTACTTAGTAGTTGATCA
ATTGCGCGCCCGTGCGCGTGTGTCAGCTTCTCCCTTTGTCTCTTTTTTTT
TTGTCTTCTTCTCGAAGAATGTCGACCGGCGGAGTCACGACTGAAAAAGC
CCCACCAACGAATTGAATGCACCGAAGGGACGTGTGTCATCTTCCCCCCC
CGTACATCCCCCCCCGAGTCTTGTTGATTGGGTTTACCCGAACACGTAAC
AATGTTGTTGTCGAACTGGAGGGGGGCTTGCTGGAACGGAAGGTATCCCC
CCCCCCCGGAGAAGTTAGGTGGCGTTCTCCTTATGGAACCCACCCGAAGT
TGTATCGCCCCAGCTGATTGGACGAACACGCATAAGCTGGACCTGCAGGC
AGCGTTGAGGCCCGTCGTGGTAGTGTTGGGGTCCGTTTGTTGAAAGGCGT
CCTCCATCTGGTGGGCTGTAGACATGGGGG
back to top

Coding sequence (CDS) from alignment at chr_00:2399803..2401432-

>Ec-00_002100.1 ID=Ec-00_002100.1|Name=Ec-00_002100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=255bp|location=Sequence derived from alignment at chr_00:2399803..2401432- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGTACAAGGACCTCGGAAACGACTGGCAGCACTCGTTGGTGCTGGC
AACCGGCAGCGCGGACGGGAGCATTCACGTCTTCGACTTGTCCAAGGGCC
AGGGCGATGAAATTCAGACGTTGCTAGGGCACAGAGATAGGGTTTACTCG
GCTGACTTCCACCCCACCGAGCCGAAGCTCGTCTCTTCCAGCGCGGACAA
GACTGTCCTGATATGGGAGCCGAACAGGAAGCGCAACTCACGGAAAGGAT
TTTGA
back to top
Synonyms
The feature 'Ec-00_002100.1' has the following synonyms
Synonym
Esi0013_0218
Esi_0013_0218