Ec-00_001990.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001990.1
Unique NameEc-00_001990.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length174
Homology
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BLAST of Ec-00_001990.1 vs. uniprot
Match: D8LEE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEE4_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 1.590e-114
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 
Query:    1 MIDCVDELMELDCSDMSVCGNDCTFEYSNPVSMERCSEDDFRVCDLAIAPRALTAVAFPPDTTYLRVQQCVLVETAXXXXXXXXXXXXXXXXXEVWECLENPVPAEYYGTPYHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQEPRICAPKLEEHFQQSGEHFLDPRWEILNN 519
            MIDCVDELMELDCSDMSVCGNDCTFEYSNPVSMERCSEDDFRVCDLAIAPRALTAVAFPPDTTYLRVQQCVLVETAXXXXXXXXXXXXXXXXXEVWECLENPVPAEYYGTPYHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQEPRICAPKLEEHFQQSGEHFLDPRWEILNN
Sbjct:    1 MIDCVDELMELDCSDMSVCGNDCTFEYSNPVSMERCSEDDFRVCDLAIAPRALTAVAFPPDTTYLRVQQCVLVETAXXXXXXXXXXXXXXXXXEVWECLENPVPAEYYGTPYHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQEPRICAPKLEEHFQQSGEHFLDPRWEILNN 173
The following BLAST results are available for this feature:
BLAST of Ec-00_001990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEE4_ECTSI1.590e-114100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2213640..2216300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length522
Hectar predicted targeting categoryother localisation
Gene idEc-00_001990.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001990Ec-00_001990Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2213640..2216300 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001990.1.3Ec-00_001990.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2213640..2213771 -
Ec-00_001990.1.2Ec-00_001990.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2214630..2214929 -
Ec-00_001990.1.1Ec-00_001990.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2216211..2216300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001990.1CDS:Ec-00_001990.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2213640..2213771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001990.1Ec-00_001990.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2213640..2216300 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001990.1 ID=Ec-00_001990.1|Name=Ec-00_001990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=174bp
MIDCVDELMELDCSDMSVCGNDCTFEYSNPVSMERCSEDDFRVCDLAIAP
RALTAVAFPPDTTYLRVQQCVLVETAAAATSESDDDGGGQEEEEVWECLE
NPVPAEYYGTPYHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQEPRICAP
KLEEHFQQSGEHFLDPRWEILNN*
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spliced messenger RNA

>Ec-00_001990.1 ID=Ec-00_001990.1|Name=Ec-00_001990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=522bp|location=Sequence derived from alignment at chr_00:2213640..2216300- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGATTGCGTCGATGAGCTGATGGAGTTGGATTGTTCGGACATGAG
CGTGTGCGGGAATGACTGCACCTTCGAGTACAGTAACCCGGTCAGCATGG
AGAGGTGCAGCGAGGATGACTTCCGCGTGTGCGACCTCGCGATTGCGCCG
CGCGCCCTGACGGCGGTAGCCTTTCCCCCAGACACGACCTACCTCCGCGT
GCAACAGTGTGTGCTGGTGGAGACGGCAGCGGCGGCCACCTCAGAGAGCG
ACGACGATGGCGGGGGGCAAGAGGAAGAGGAGGTGTGGGAGTGCCTAGAG
AATCCTGTGCCGGCGGAGTACTACGGGACGCCGTATCATTGGCCAAGCGC
CGTGGACGTCGACTACTCCGCGGCCGCTTTGTGCGAGAAGGATAGCCACT
GCCCCGGCTCGTTCTGCTCGTCACAGCAGGAGCCAAGAATATGTGCGCCG
AAGCTGGAAGAGCACTTCCAACAGAGCGGCGAGCATTTCTTGGATCCACG
CTGGGAAATCCTCAACAACTAG
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protein sequence of Ec-00_001990.1

>Ec-00_001990.1 ID=Ec-00_001990.1|Name=Ec-00_001990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=174bp
MIDCVDELMELDCSDMSVCGNDCTFEYSNPVSMERCSEDDFRVCDLAIAP
RALTAVAFPPDTTYLRVQQCVLVETAAAATSESDDDGGGQEEEEVWECLE
NPVPAEYYGTPYHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQEPRICAP
KLEEHFQQSGEHFLDPRWEILNN*
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mRNA from alignment at chr_00:2213640..2216300-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001990.1 ID=Ec-00_001990.1|Name=Ec-00_001990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2661bp|location=Sequence derived from alignment at chr_00:2213640..2216300- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATAGATTGCGTCGATGAGCTGATGGAGTTGGATTGTTCGGACATGAG
CGTGTGCGGGAATGACTGCACCTTCGAGTACAGTAACCCGGTAAGCAGCT
AGTACCCGATCGTAGAAAATACGTGGCTGTGAAACGTGTTTGTTTGTCAA
CGAGGTATTTCGGCATCTATTTGTAGGATATCTCCAGCGCCTCAACGTGT
TTTCCACGAAGATGCTTCGTAGTACACGTCGATGAAATACAGTACCACAT
CATACCGCGATCTTTTAGCTTCAGGGCATCTTGCACGGGTATAGTAAACT
TTAATATTGGTAGACAACTTTGCGGGAAGCACGATTTCCTGTATATTGCC
CAAGAGCCGCGGCTAGCGGCTGGCTCCGCGACGAATGGCGCCTTTCAGAA
ATTCGCTTCCCTATTGAATACGCAGCATCAGCAGAACCTGCGGAGCCACC
ATGCATGTGCAATCTCGAGGCTTCATCCTTTTGATGTCGCAGCACTGGAC
AAGCCGTCTATGGATTACCGCGAATGCATTGGTCCCGTTTCGCACCCGTA
AAAACCTTCTACTGTCGAAACCAAGTTTGGGCTTATACCCAGCCGCTGTT
GTCTCGCTGCCGCTCAACTCCGAACAGCGTATCCCGAGCGATTCCGTAGT
TCTCCCGGTCAACAACTTTGGCGCCAACTATCTACAGCTGAGCGTTTGTT
CGAAGGGCGTGAGCGCCTCCAAGCTCACTCATTTTGGCCAGGTATTTATG
AGTCTGCTATGGTTCGGACAGGTCGAGCGTAGCTTGTTCTCAGGGAGCTT
ACATACATACATACATTTCGTACTTTTACCATGATGTGATATATTGGCGT
GCTATCATGTGGATGGATGGCCAACTGTGGGGTGCTTTGAACATCGATGT
ATGTGTGTCATCGTCGAATGCATTTTGCGCATGTATGCTGCTACCAATCG
TTCTATTTAGTCTGTGTATCGAAGGGCAGACTGGTTGTTGGTGTTCCGGA
GCTCGGCATTTTCGGAGAGCGTGTAGCGCGGAAGCCGAGAGTGCAGCCGG
CCCCACCTTTCTGTTCCTACGACCGTGTGCGTCTGCAACCTCGAGATGTC
CCCTCCTGAGCGACGTGTAGCTATTAGTTGATATAGGGAATAAGGAAGGA
AAATGAATGAATTGCTTGAAGGAAATTTGTGAGTTGCTTTCAAGGTGGAA
GCCAAACAAACCTGTGGTCGGAAGAGGCTGTGGATGGAGCAGCATCCCGT
CGCGACGGACACATGTTAAATGATGTAGCGGAACAGTAAGTACCACGAAC
CCCCCCCCCCAGAACCACCCTGTGTGTGGAGTTCTTGTTTACCACCACCA
CCACCACCACCACCATCACAGGTCAGCATGGAGAGGTGCAGCGAGGATGA
CTTCCGCGTGTGCGACCTCGCGATTGCGCCGCGCGCCCTGACGGCGGTAG
CCTTTCCCCCAGACACGACCTACCTCCGCGTGCAACAGTGTGTGCTGGTG
GAGACGGCAGCGGCGGCCACCTCAGAGAGCGACGACGATGGCGGGGGGCA
AGAGGAAGAGGAGGTGTGGGAGTGCCTAGAGAATCCTGTGCCGGCGGAGT
ACTACGGGACGCCGTATCATTGGCCAAGCGCCGTGGACGTCGACTACTCC
GCGGCCGCTTTGTGCGAGAAGGTATGAATAGGGCAGCGCCGAATGAATCG
TGTTCGTGGACGTCCAAGTTGGTTGGCTGAAGAGGGTATTTTTCGCCTTG
TTGGTCAGGAGGGAGGTTAGCCGGGTCCACCGCGACTTCCTAGTATTGGG
GAAAATTGTCTGTTCCCGTTCGAGGAGCGGGGGTAGCTCTTGGTGTTACT
TTTTTTCGGTTTTGTCTGGTTTTCTCCACCATCGTGTGGTTGTTTATTGG
ATGCAAGAAAGCCCTCAAGGTAGCGAACGGTGGATTGATGGACTGGGAAC
AGCATCGCTGTCCATCCTTTCCATTCTCGAGTTGAGTGCCAAATGGAAGC
CTCCACCAAACGCAACAAGAATAGTCTAGTGAGCAGGGTCCCTGTGTAGT
GCCGGTTTGTGCCCAGAAAATTCACCAGCATTATCATACCGGACCGGCGC
TATTCAAAGTAGTGAGACTTGGAAATACAATGCGTGCCCGCCGAAACACC
GGCCGGCGCTACACCGGGGATTGGCACTATTCGACCGGCACTAAACAGGG
ACCCTCACTGTACAATTAGTCGGGAGGACAATCTAACGCAAAACGGCGAC
CTGACAATGAACTGACCTCTGGGTTCATGCCGCCTGAAAACCGGGACCCC
CAGTTGGAATCTGTTCGATCGGTCAAGAGTCGGAACAACTGGTGTGGCGA
ACTCATGTACCAAGTTGCACAAGCGGTGGTTTTCGAGCTGGAAGCTGTTG
TAATTTCGGTTGACCTGCCAGTGCGATCCCTCAACCATCTTCCCCTCCGC
CCTCCCTCCCGGGCACCCGCACTTCCGAAACGCCGTTCGGTCCGATGTAC
TTGTATGTGCAACTTTTCACCGCCAACAGGATAGCCACTGCCCCGGCTCG
TTCTGCTCGTCACAGCAGGAGCCAAGAATATGTGCGCCGAAGCTGGAAGA
GCACTTCCAACAGAGCGGCGAGCATTTCTTGGATCCACGCTGGGAAATCC
TCAACAACTAG
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Coding sequence (CDS) from alignment at chr_00:2213640..2216300-

>Ec-00_001990.1 ID=Ec-00_001990.1|Name=Ec-00_001990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=522bp|location=Sequence derived from alignment at chr_00:2213640..2216300- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATAGATTGCGTCGATGAGCTGATGGAGTTGGATTGTTCGGACATGAG
CGTGTGCGGGAATGACTGCACCTTCGAGTACAGTAACCCGGTCAGCATGG
AGAGGTGCAGCGAGGATGACTTCCGCGTGTGCGACCTCGCGATTGCGCCG
CGCGCCCTGACGGCGGTAGCCTTTCCCCCAGACACGACCTACCTCCGCGT
GCAACAGTGTGTGCTGGTGGAGACGGCAGCGGCGGCCACCTCAGAGAGCG
ACGACGATGGCGGGGGGCAAGAGGAAGAGGAGGTGTGGGAGTGCCTAGAG
AATCCTGTGCCGGCGGAGTACTACGGGACGCCGTATCATTGGCCAAGCGC
CGTGGACGTCGACTACTCCGCGGCCGCTTTGTGCGAGAAGGATAGCCACT
GCCCCGGCTCGTTCTGCTCGTCACAGCAGGAGCCAAGAATATGTGCGCCG
AAGCTGGAAGAGCACTTCCAACAGAGCGGCGAGCATTTCTTGGATCCACG
CTGGGAAATCCTCAACAACTAG
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Synonyms
The feature 'Ec-00_001990.1' has the following synonyms
Synonym
Esi0013_0192
Esi_0013_0192