Ec-00_001980.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001980.2
Unique NameEc-00_001980.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length108
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_001980.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2211446..2212455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1010
Hectar predicted targeting categoryother localisation
Gene idEc-00_001980.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001980Ec-00_001980Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2211446..2212455 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001980.2.1Ec-00_001980.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2211446..2212455 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0019803UTR:Ec-00_001980.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 2211446..2211446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001980.2CDS:Ec-00_001980.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2211447..2211770 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0019805UTR:Ec-00_001980.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 2211771..2212455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001980.2Ec-00_001980.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2211447..2211770 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001980.2 ID=Ec-00_001980.2|Name=Ec-00_001980.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=108bp
MSRGPSLHDNNSSAASRLSSATTYIPRCPLHRHTHFTSERALSGRAGKHN
SSARPGCFTTPPVEQGGLPRSKKQASRHVFVHFYFRTAQGVCGNTSEHDI
SVFSGGGG
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spliced messenger RNA

>Ec-00_001980.2 ID=Ec-00_001980.2|Name=Ec-00_001980.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1010bp|location=Sequence derived from alignment at chr_00:2211446..2212455- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TACACGCACGTTCAGCTTGCGCATGGGCGTGCTCTACTATTGCTATACTC
TTTGCCTTTCATTGGCCGGAAAACGTCGGGGACCGACCTATCTAGGCCGG
GGGGTAGGGGTGGGGGGGGGTGGGGGGGTTACTCTATGGTTTGATTCAAG
CGCGAAACATGTTTTGTCTTGATTTCGGGCCGAACAAACCATCGCAAATC
GGAGGTTCCACAAAAATCCCACGACATGGTTACTCCTCCTGCAAATCCTG
CAAATAAGAAGAAAACAGGACTATGGCTTATGCTAGCCACCAAACGGCGG
CGCTGCTTCAACAATAAAAAGATAGTCGGTGCACCTAAGCGGGCAAAAAA
AGAGAAACATGATTAAAAAGAAAAAGAACAGAAATAAGAAACCTTATTGC
ACCGCCCCCGGTCCAACAAAGACACAAAACACAGACGACAAGCACAGCTT
CGGCGGACTGCTGCTGTGGCGGGCATTGCGAACACGGCACGGAACAACAT
CACCCGGAGCACACCGCACGCTGTCGTGGAGTGAAGCCCTGCGCTCTTCC
TCCCCGTGTACCCTCACGACCTCACACACCCGTCCCGTCCCACGTGTGTG
TGTGCTGCCGGCAGCGGGGCTCGTTCGCATCAAAGGTGCAAATTGGCCAA
CAAGTGCAACCCCCCGCCCGCGGTAAACTCGCCCCATGTCGCGGGGCCCC
TCCCTCCACGACAACAACTCCTCCGCCGCCTCCCGGCTTTCTAGCGCGAC
AACCTACATTCCGCGGTGCCCCCTACATCGTCACACACACTTTACGTCAG
AGCGTGCTCTCTCTGGCCGTGCGGGAAAACACAACAGCAGCGCTCGCCCG
GGCTGTTTCACCACTCCACCGGTGGAACAGGGTGGCCTACCACGCTCCAA
AAAGCAAGCAAGCAGACACGTGTTCGTACATTTCTACTTTCGCACGGCGC
AAGGCGTTTGTGGCAACACCTCAGAACATGACATTTCAGTATTTTCGGGG
GGGGGGGGGG
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protein sequence of Ec-00_001980.2

>Ec-00_001980.2 ID=Ec-00_001980.2|Name=Ec-00_001980.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=108bp
MSRGPSLHDNNSSAASRLSSATTYIPRCPLHRHTHFTSERALSGRAGKHN
SSARPGCFTTPPVEQGGLPRSKKQASRHVFVHFYFRTAQGVCGNTSEHDI
SVFSGGGG
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mRNA from alignment at chr_00:2211446..2212455-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001980.2 ID=Ec-00_001980.2|Name=Ec-00_001980.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1010bp|location=Sequence derived from alignment at chr_00:2211446..2212455- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TACACGCACGTTCAGCTTGCGCATGGGCGTGCTCTACTATTGCTATACTC
TTTGCCTTTCATTGGCCGGAAAACGTCGGGGACCGACCTATCTAGGCCGG
GGGGTAGGGGTGGGGGGGGGTGGGGGGGTTACTCTATGGTTTGATTCAAG
CGCGAAACATGTTTTGTCTTGATTTCGGGCCGAACAAACCATCGCAAATC
GGAGGTTCCACAAAAATCCCACGACATGGTTACTCCTCCTGCAAATCCTG
CAAATAAGAAGAAAACAGGACTATGGCTTATGCTAGCCACCAAACGGCGG
CGCTGCTTCAACAATAAAAAGATAGTCGGTGCACCTAAGCGGGCAAAAAA
AGAGAAACATGATTAAAAAGAAAAAGAACAGAAATAAGAAACCTTATTGC
ACCGCCCCCGGTCCAACAAAGACACAAAACACAGACGACAAGCACAGCTT
CGGCGGACTGCTGCTGTGGCGGGCATTGCGAACACGGCACGGAACAACAT
CACCCGGAGCACACCGCACGCTGTCGTGGAGTGAAGCCCTGCGCTCTTCC
TCCCCGTGTACCCTCACGACCTCACACACCCGTCCCGTCCCACGTGTGTG
TGTGCTGCCGGCAGCGGGGCTCGTTCGCATCAAAGGTGCAAATTGGCCAA
CAAGTGCAACCCCCCGCCCGCGGTAAACTCGCCCCATGTCGCGGGGCCCC
TCCCTCCACGACAACAACTCCTCCGCCGCCTCCCGGCTTTCTAGCGCGAC
AACCTACATTCCGCGGTGCCCCCTACATCGTCACACACACTTTACGTCAG
AGCGTGCTCTCTCTGGCCGTGCGGGAAAACACAACAGCAGCGCTCGCCCG
GGCTGTTTCACCACTCCACCGGTGGAACAGGGTGGCCTACCACGCTCCAA
AAAGCAAGCAAGCAGACACGTGTTCGTACATTTCTACTTTCGCACGGCGC
AAGGCGTTTGTGGCAACACCTCAGAACATGACATTTCAGTATTTTCGGGG
GGGGGGGGGG
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Coding sequence (CDS) from alignment at chr_00:2211446..2212455-

>Ec-00_001980.2 ID=Ec-00_001980.2|Name=Ec-00_001980.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=324bp|location=Sequence derived from alignment at chr_00:2211446..2212455- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGCGGGGCCCCTCCCTCCACGACAACAACTCCTCCGCCGCCTCCCG
GCTTTCTAGCGCGACAACCTACATTCCGCGGTGCCCCCTACATCGTCACA
CACACTTTACGTCAGAGCGTGCTCTCTCTGGCCGTGCGGGAAAACACAAC
AGCAGCGCTCGCCCGGGCTGTTTCACCACTCCACCGGTGGAACAGGGTGG
CCTACCACGCTCCAAAAAGCAAGCAAGCAGACACGTGTTCGTACATTTCT
ACTTTCGCACGGCGCAAGGCGTTTGTGGCAACACCTCAGAACATGACATT
TCAGTATTTTCGGGGGGGGGGGGG
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Synonyms
The feature 'Ec-00_001980.2' has the following synonyms
Synonym
Esi013_0248
Esi_013_0248