Ec-00_001810.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001810.1
Unique NameEc-00_001810.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length400
Homology
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BLAST of Ec-00_001810.1 vs. uniprot
Match: D8LED2_ECTSI (Ig-like protein, group 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED2_ECTSI)

HSP 1 Score: 688 bits (1775), Expect = 1.290e-247
Identity = 399/399 (100.00%), Postives = 399/399 (100.00%), Query Frame = 1 
Query:    1 MPSPGTTPAPATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVNPESTPAXXAPQXXXXXXPAPVTDESPGVGACDPNPCMNGGSCEVDPNGGYTCSCGSSYGAMMCETDVTGMSEFFITVDFLGSWTDERKGVFQSAANRWSEVLTRIPCSGTNGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTFKDELMTGYVKAGQMPLSKLTCASLADRGYVVQPAKADSYTVPSRRDPSARQGETKTYKLAESTDDTTIGVCNEEGEIVDTMQGKRIRF 1197
            MPSPGTTPAPATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVNPESTPAXXAPQXXXXXXPAPVTDESPGVGACDPNPCMNGGSCEVDPNGGYTCSCGSSYGAMMCETDVTGMSEFFITVDFLGSWTDERKGVFQSAANRWSEVLTRIPCSGTNGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTFKDELMTGYVKAGQMPLSKLTCASLADRGYVVQPAKADSYTVPSRRDPSARQGETKTYKLAESTDDTTIGVCNEEGEIVDTMQGKRIRF
Sbjct:   33 MPSPGTTPAPATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVNPESTPAXXAPQXXXXXXPAPVTDESPGVGACDPNPCMNGGSCEVDPNGGYTCSCGSSYGAMMCETDVTGMSEFFITVDFLGSWTDERKGVFQSAANRWSEVLTRIPCSGTNGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTFKDELMTGYVKAGQMPLSKLTCASLADRGYVVQPAKADSYTVPSRRDPSARQGETKTYKLAESTDDTTIGVCNEEGEIVDTMQGKRIRF 431
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BLAST of Ec-00_001810.1 vs. uniprot
Match: D8LED1_ECTSI (PR1-like metalloprotease n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED1_ECTSI)

HSP 1 Score: 616 bits (1589), Expect = 5.810e-215
Identity = 292/311 (93.89%), Postives = 302/311 (97.11%), Query Frame = 1 
Query:  265 SPGVGACDPNPCMNGGSCEVDPNGGYTCSCGSSYGAMMCETDVTGMSEFFITVDFLGSWTDERKGVFQSAANRWSEVLTRIPCSGTNGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTFKDELMTGYVKAGQMPLSKLTCASLADRGYVVQPAKADSYTVPSRRDPSARQGETKTYKLAESTDDTTIGVCNEEGEIVDTMQGKRIRF 1197
            SPGVGAC+PNPCMNGGSCEVDPNGGYTCSCGSSYG MMCETDVTGMSEFFITVDFLG+W+DERKGVFQ AANRWSE+LT IPCSGTNGN GAAGELTITSTLEPIDGVYGTLGFAGPRGTY+DCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDST SAEWKCPLAAQVYNDFMGNPAGSRADI+ELEGGTGTSCGHFSESTF+DELMTG+V AG MPLSKLTCASLAD+GYVVQ +KADSYTVPSRRDPSARQGETKTYKLAESTDDTTI VCNEEGEIVDTMQGKRIRF
Sbjct:  408 SPGVGACNPNPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVTGMSEFFITVDFLGTWSDERKGVFQRAANRWSEILTHIPCSGTNGNGGAAGELTITSTLEPIDGVYGTLGFAGPRGTYNDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDSTGSAEWKCPLAAQVYNDFMGNPAGSRADIVELEGGTGTSCGHFSESTFEDELMTGFVNAGTMPLSKLTCASLADQGYVVQSSKADSYTVPSRRDPSARQGETKTYKLAESTDDTTIDVCNEEGEIVDTMQGKRIRF 718
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BLAST of Ec-00_001810.1 vs. uniprot
Match: D8LED3_ECTSI (WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LED3_ECTSI)

HSP 1 Score: 614 bits (1583), Expect = 3.060e-214
Identity = 292/311 (93.89%), Postives = 301/311 (96.78%), Query Frame = 1 
Query:  265 SPGVGACDPNPCMNGGSCEVDPNGGYTCSCGSSYGAMMCETDVTGMSEFFITVDFLGSWTDERKGVFQSAANRWSEVLTRIPCSGTNGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTFKDELMTGYVKAGQMPLSKLTCASLADRGYVVQPAKADSYTVPSRRDPSARQGETKTYKLAESTDDTTIGVCNEEGEIVDTMQGKRIRF 1197
            SPGVGAC+PNPCMNGGSCEVDPNGGYTCSCGSSYG MMCETDVTGMSEFFITVDFLG+W+DERKGVFQ AANRWSE+LT IPCSGTNGN GAAGELTITSTLEPIDGVYGTLGFAGPRGTY+DCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDST SAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTF+DELMTG+V AG MPLSKLTCASLAD+GYVVQ +KADSYTVPSRRDPSARQ ETKTYKLAESTDDTTI VCNEEGEIVDTMQGKRIRF
Sbjct:  395 SPGVGACNPNPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVTGMSEFFITVDFLGTWSDERKGVFQRAANRWSEILTHIPCSGTNGNGGAAGELTITSTLEPIDGVYGTLGFAGPRGTYNDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDSTGSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTFEDELMTGFVNAGTMPLSKLTCASLADQGYVVQSSKADSYTVPSRRDPSARQDETKTYKLAESTDDTTIDVCNEEGEIVDTMQGKRIRF 705
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BLAST of Ec-00_001810.1 vs. uniprot
Match: D7G7J6_ECTSI (Putative zinc metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J6_ECTSI)

HSP 1 Score: 443 bits (1140), Expect = 8.600e-147
Identity = 205/216 (94.91%), Postives = 211/216 (97.69%), Query Frame = 1 
Query:  253 VTDESPGVGACDPNPCMNGGSCEVDPNGGYTCSCGSSYGAMMCETDVTGMSEFFITVDFLGSWTDERKGVFQSAANRWSEVLTRIPCSGTNGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTG 900
            VTDESPGVGAC+PNPCMNGGSCEVDPNGGYTCSCGSSYG MMCETDVTGMSEFFITVDFLG+W+DERKGVFQ AANRWSE+LT IPCSGTNGN GAAGELTITSTLEPIDGVYGTLGFAGPRGTY+DCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDST SAEWKCPLAAQVYNDFMGNPAGSRADI+ELEGGTG
Sbjct:  495 VTDESPGVGACNPNPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVTGMSEFFITVDFLGTWSDERKGVFQRAANRWSEILTHIPCSGTNGNGGAAGELTITSTLEPIDGVYGTLGFAGPRGTYNDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGECSDCDSTGSAEWKCPLAAQVYNDFMGNPAGSRADIVELEGGTG 710
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BLAST of Ec-00_001810.1 vs. uniprot
Match: D8LJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJN8_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.860e-56
Identity = 96/170 (56.47%), Postives = 117/170 (68.82%), Query Frame = 1 
Query:  259 DESPGVGACDPNPCMNGGSCEVDPNGGYTCSCGSSYGAMMCETDVTGMSEFFITVDFLGSWTDE----RKGVFQSAANRWSEVLTRIPCSGTNGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTG 756
            D S G G C+PNPC+N GSCEVDPNGGY+CSC SSYG M CETD TG+ EFFIT++F G+W       RK +FQ+AA RW +V+T IPC+GT+   GA GEL I+ T   IDG  G     GP   Y DC G+SY G M FD DDI ++E  G  EG+++HE+GHVIG G
Sbjct:  375 DSSSGDGECNPNPCLNEGSCEVDPNGGYSCSCSSSYGGMNCETDTTGLPEFFITLEFDGTWDGALDATRKDIFQTAAKRWEKVVTHIPCTGTH-PEGATGELIISVTQHEIDGSGGQFALGGPSDVYGDCPGVSYMGVMIFDSDDIDDLEDDGILEGLVVHEIGHVIGVG 543
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BLAST of Ec-00_001810.1 vs. uniprot
Match: A0A511NAJ7_9DEIO (Peptidase n=1 Tax=Deinococcus cellulosilyticus NBRC 106333 = KACC 11606 TaxID=1223518 RepID=A0A511NAJ7_9DEIO)

HSP 1 Score: 154 bits (390), Expect = 3.310e-40
Identity = 99/237 (41.77%), Postives = 129/237 (54.43%), Query Frame = 1 
Query:  391 VTGMSE-----FFITVDFLGSW--TDERKGVFQSAANRWSEVLTRIPCSGTNGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWG-------ECSDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTFKDELMTGYVKAGQMPLSKLTCASLADRGYVVQPAKADSYTVP 1059
            VT +SE     F I +DF      T  +K +F+ AA+RW +V+T    S  N       +L I ++   IDGV G LG AGP     +   +  SG M FD  D++ ME  G    VILHEMGHV+G GTLW          +DC +++S  +    A   YN   G  AGS    +E  GG GT CGH+ ES F  ELMTG+ +AG MP+S++T ASL D GY V  A AD+YT+P
Sbjct:   54 VTAISEEPSDPFDIDLDFSADTLLTTSQKAIFEQAASRWEQVITH-GLSNINDGGTIYDDLVIKASAVAIDGVGGILGQAGPE-FIRNSNSLPLSGIMQFDSADLSNMETSGILYNVILHEMGHVLGIGTLWDYLGFLTYNAADCQTSTSIVFNKANAIAQYNALGG--AGSVP--VEDTGGAGTKCGHWRESIFDTELMTGWAEAGSMPMSRMTIASLKDLGYSVNLAAADTYTLP 284
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BLAST of Ec-00_001810.1 vs. uniprot
Match: Q1IXS4_DEIGD (Metalloendopeptidase M8 containing Ig-like domains n=3 Tax=Deinococcus TaxID=1298 RepID=Q1IXS4_DEIGD)

HSP 1 Score: 157 bits (396), Expect = 1.100e-39
Identity = 95/236 (40.25%), Postives = 129/236 (54.66%), Query Frame = 1 
Query:  391 VTGMSEFFITVDFLGS--WTDERKGVFQSAANRWSEVLTR----IP-CSGTNGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLW-----GECSDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTFKDELMTGYVKAGQMPLSKLTCASLADRGYVVQPAKADSYTVPS 1062
            +TG   F ITV F  +   T+ +K  F SAANRWS+V+      +P    + G      ++TI ++   IDG    LG AGPR   +    +   GEM FD  D+A ME  GT +GV+LHEMGHV+G GTLW        S C++ +  ++      + Y +  G  AG     +E + G GT C H+ ES F+ ELMTG+   G MPLS+LT  +LAD GY V  A AD YT+P+
Sbjct:  208 LTGSDPFNITVIFPANNNLTETQKAAFTSAANRWSQVIAAGLPDVPNVRLSTGETVTVDDVTIVASGVAIDGPGNVLGQAGPRQVRNGTT-LPLWGEMQFDSADLANMEANGTLQGVVLHEMGHVLGIGTLWDRSLSANASPCENATQVQYLGASGLREYRNLGGLAAGVP---VENQYGEGTKCAHWKESVFQSELMTGFASRGPMPLSRLTLGALADLGYSVNYAAADPYTIPN 439
[Close]
BLAST of Ec-00_001810.1 vs. uniprot
Match: A0A016QUH3_9DEIO (Ig-like protein, group 2 n=1 Tax=Deinococcus phoenicis TaxID=1476583 RepID=A0A016QUH3_9DEIO)

HSP 1 Score: 157 bits (397), Expect = 1.110e-39
Identity = 96/234 (41.03%), Postives = 128/234 (54.70%), Query Frame = 1 
Query:  397 GMSEFFITVDFLGS--WTDERKGVFQSAANRWSEVLTR-IPCSG----TNGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGE-----CSDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTFKDELMTGYVKAGQMPLSKLTCASLADRGYVVQPAKADSYTVPS 1062
            G   F ITV F  +   T+ +K  F SAANRWS+V+   +P       + G      ++ I ++   IDG    LG AGPR   S    +   GEM FD  D+A ME  GT +GVILHEMGHV+G GTLW +      S C S +  ++      + Y +  G  AG     +E + G GT CGH+ ES F+ ELMTG+   G MP+SK+T  +LAD GY V  A AD+YT+P+
Sbjct:  230 GADTFNITVIFPANSNLTEGQKAAFTSAANRWSQVIAAGLPDVANVRISTGQTITVDDVAIVASGADIDGPGQILGQAGPRQARSGGT-LPLWGEMQFDSADLASMEANGTLQGVILHEMGHVLGIGTLWSKFLSANASPCTSATKVQYSGTNGLREYKNLNGQAAGVP---VEDQYGAGTKCGHWKESVFQSELMTGFASRGGMPMSKITLGALADLGYTVNYAAADAYTIPN 459
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BLAST of Ec-00_001810.1 vs. uniprot
Match: UPI00068D7A1E (hypothetical protein n=1 Tax=Deinococcus misasensis TaxID=392413 RepID=UPI00068D7A1E)

HSP 1 Score: 151 bits (381), Expect = 3.800e-39
Identity = 94/236 (39.83%), Postives = 129/236 (54.66%), Query Frame = 1 
Query:  382 ETDVTGMSEFFITVDFLGSWTDERKGVFQSAANRWSEVLTR-IP-CSGT-NGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGEC------SDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADI-IELEGGTGTSCGHFSESTFKDELMTGYVKAGQMPLSKLTCASLADRGYVVQPAKADSYTVP 1059
            +T       F IT+ +    T  +K  FQ AA RW +V+   +P   GT NG      ++ IT+++  +DG    LG AGP    +  R +  +G M FD  D+A ME+ GT + VILHEMGHV+G GTLW +        DC S S+  +    A+  Y+       G   ++ +E + G GT CGH+SES FK ELMTG+  AG MPLSK+T  +L D GYVV    AD+Y +P
Sbjct:   32 QTSPNAKDSFQITLQYASGMTATQKTAFQEAAQRWEKVIAAGLPDVKGTVNGQNLNVDDVQITASVIAMDGPGKILGRAGPELLRNSSR-LPITGVMEFDSADLAMMEQNGTLKNVILHEMGHVLGLGTLWDKFIVHNGNPDCLSASTVSFNGTKASTQYHLL-----GQSGNVPVENQYGAGTKCGHWSESLFKTELMTGFANAGPMPLSKMTVGALEDLGYVVNYNAADAYMMP 261
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BLAST of Ec-00_001810.1 vs. uniprot
Match: UPI00166CECCE (peptidase n=1 Tax=Deinococcus roseus TaxID=392414 RepID=UPI00166CECCE)

HSP 1 Score: 147 bits (370), Expect = 1.630e-37
Identity = 95/228 (41.67%), Postives = 126/228 (55.26%), Query Frame = 1 
Query:  409 FFITVDFLG-SWTDERKGVFQSAANRWSEVLTR-IP-CSGT-NGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLWGEC------SDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADI-IELEGGTGTSCGHFSESTFKDELMTGYVKAGQMPLSKLTCASLADRGYVVQPAKADSYTVP 1059
            F IT+ F   S T  +K  F  AANRWS V+   +P  SGT NG      +L IT++   IDGV   LG AGP    +D  G+  +G M FD  D+  ME  GT  GVILHEMGHV+G GTLW +       S+C   ++  +    A   Y+       G   ++ +E +   GT CGH+SE+ F +ELMTG+V  G MPLSK+T  +L D GY V    A++YT+P
Sbjct:   41 FNITLVFPNASLTPAQKTAFYDAANRWSSVIAAGLPDASGTINGQSLKVDDLQITASAVSIDGVGKVLGRAGPDLVRNDT-GLPITGTMEFDSADLKLMEANGTLSGVILHEMGHVLGIGTLWSKFITYNGNSNCQGATAISFNGTHATTQYHSL-----GKTGNVPVENQYSAGTKCGHWSEALFGNELMTGFVNMGSMPLSKITVGALEDLGYKVNYNAAEAYTLP 262
The following BLAST results are available for this feature:
BLAST of Ec-00_001810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LED2_ECTSI1.290e-247100.00Ig-like protein, group 2 n=1 Tax=Ectocarpus silicu... [more]
D8LED1_ECTSI5.810e-21593.89PR1-like metalloprotease n=2 Tax=Ectocarpus silicu... [more]
D8LED3_ECTSI3.060e-21493.89WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 R... [more]
D7G7J6_ECTSI8.600e-14794.91Putative zinc metalloendopeptidase n=1 Tax=Ectocar... [more]
D8LJN8_ECTSI1.860e-5656.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A511NAJ7_9DEIO3.310e-4041.77Peptidase n=1 Tax=Deinococcus cellulosilyticus NBR... [more]
Q1IXS4_DEIGD1.100e-3940.25Metalloendopeptidase M8 containing Ig-like domains... [more]
A0A016QUH3_9DEIO1.110e-3941.03Ig-like protein, group 2 n=1 Tax=Deinococcus phoen... [more]
UPI00068D7A1E3.800e-3939.83hypothetical protein n=1 Tax=Deinococcus misasensi... [more]
UPI00166CECCE1.630e-3741.67peptidase n=1 Tax=Deinococcus roseus TaxID=392414 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2029721..2033156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score643.7
Seed ortholog evalue5.9e-182
Seed eggNOG ortholog2880.D8LED4
Length1225
Hectar predicted targeting categoryother localisation
Gene idEc-00_001810.1
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E9TD@1,2SG44@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001810Ec-00_001810Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2029721..2033156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001810.1Ec-00_001810.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2029746..2033156 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001810.1.8Ec-00_001810.1.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2029721..2029907 -
Ec-00_001810.1.7Ec-00_001810.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2030490..2030561 -
Ec-00_001810.1.6Ec-00_001810.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2030882..2030949 -
Ec-00_001810.1.5Ec-00_001810.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2031227..2031369 -
Ec-00_001810.1.4Ec-00_001810.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2031633..2031725 -
Ec-00_001810.1.3Ec-00_001810.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2031981..2032160 -
Ec-00_001810.1.2Ec-00_001810.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2032340..2032424 -
Ec-00_001810.1.1Ec-00_001810.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2032760..2033156 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0018103UTR:Ec-00_001810.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 2029721..2029745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001810.1CDS:Ec-00_001810.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2029746..2029907 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001810.1 ID=Ec-00_001810.1|Name=Ec-00_001810.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=400bp
MPSPGTTPAPATTTPPPSTGEEPIPTTTQPLPVTLPPSFPTSPPASETDP
PSPGPEPSTPAPVNPESTPAPVAPQPEPEPTPAPVTDESPGVGACDPNPC
MNGGSCEVDPNGGYTCSCGSSYGAMMCETDVTGMSEFFITVDFLGSWTDE
RKGVFQSAANRWSEVLTRIPCSGTNGNRGAAGELTITSTLEPIDGVYGTL
GFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIG
TGTLWGECSDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTG
TSCGHFSESTFKDELMTGYVKAGQMPLSKLTCASLADRGYVVQPAKADSY
TVPSRRDPSARQGETKTYKLAESTDDTTIGVCNEEGEIVDTMQGKRIRF*
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spliced messenger RNA

>Ec-00_001810.1 ID=Ec-00_001810.1|Name=Ec-00_001810.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1225bp|location=Sequence derived from alignment at chr_00:2029721..2033156- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCGCCCGGGACTACCCCTGCCCCTGCCACCACCACCCCGCCGCC
CTCCACTGGGGAAGAGCCTATCCCGACAACAACTCAACCGCTCCCTGTCA
CCCTCCCTCCGTCCTTCCCCACCTCCCCTCCCGCCTCCGAGACTGACCCG
CCTTCACCTGGACCGGAACCATCGACCCCTGCTCCTGTAAACCCTGAATC
CACTCCGGCCCCTGTTGCGCCCCAGCCCGAGCCCGAGCCCACTCCGGCCC
CGGTCACAGACGAAAGCCCTGGCGTTGGTGCATGCGACCCGAACCCTTGC
ATGAACGGAGGGTCGTGCGAGGTGGACCCCAACGGTGGGTACACCTGCAG
CTGCGGGAGCAGCTACGGAGCGATGATGTGCGAGACCGACGTTACAGGCA
TGTCTGAGTTCTTCATCACGGTGGACTTCCTCGGATCGTGGACTGACGAA
CGCAAGGGCGTCTTCCAAAGCGCAGCCAACAGGTGGTCGGAAGTCTTGAC
GCGCATCCCGTGCTCCGGAACCAACGGCAACAGGGGTGCCGCGGGCGAGC
TTACCATCACCTCCACTCTTGAACCCATCGACGGTGTCTACGGAACCCTG
GGCTTCGCCGGGCCTCGCGGCACCTACAGTGACTGCCGTGGCATCAGCTA
CTCCGGAGAGATGACGTTCGACATCGACGACATCGCTGAGATGGAGAGGC
AGGGAACCTTCGAAGGTGTCATCCTCCACGAGATGGGCCACGTTATCGGC
ACCGGTACCCTGTGGGGTGAGTGTTCCGATTGTGACAGCACCAGCAGCGC
GGAATGGAAGTGCCCCCTGGCTGCCCAGGTGTACAACGACTTCATGGGAA
ACCCTGCTGGTTCCCGGGCCGACATCATCGAGCTCGAAGGCGGAACCGGT
ACAAGCTGCGGACACTTCAGCGAATCGACTTTCAAAGATGAACTCATGAC
TGGCTACGTCAAAGCGGGCCAGATGCCGCTTTCGAAGCTGACGTGCGCAT
CTCTGGCGGACCGAGGCTACGTCGTCCAACCGGCCAAGGCGGACTCGTAC
ACCGTTCCGTCCCGTCGGGACCCCTCCGCCCGCCAGGGCGAGACGAAGAC
ATACAAGCTTGCGGAGAGCACCGACGACACGACCATCGGCGTTTGCAACG
AGGAGGGAGAGATCGTCGACACCATGCAAGGGAAGCGGATCCGCTTCTGA
TCCGAACGACTGCTTGCAAGAGGAA
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protein sequence of Ec-00_001810.1

>Ec-00_001810.1 ID=Ec-00_001810.1|Name=Ec-00_001810.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=400bp
MPSPGTTPAPATTTPPPSTGEEPIPTTTQPLPVTLPPSFPTSPPASETDP
PSPGPEPSTPAPVNPESTPAPVAPQPEPEPTPAPVTDESPGVGACDPNPC
MNGGSCEVDPNGGYTCSCGSSYGAMMCETDVTGMSEFFITVDFLGSWTDE
RKGVFQSAANRWSEVLTRIPCSGTNGNRGAAGELTITSTLEPIDGVYGTL
GFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIG
TGTLWGECSDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTG
TSCGHFSESTFKDELMTGYVKAGQMPLSKLTCASLADRGYVVQPAKADSY
TVPSRRDPSARQGETKTYKLAESTDDTTIGVCNEEGEIVDTMQGKRIRF*
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mRNA from alignment at chr_00:2029721..2033156-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001810.1 ID=Ec-00_001810.1|Name=Ec-00_001810.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3436bp|location=Sequence derived from alignment at chr_00:2029721..2033156- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCTTCGCCCGGGACTACCCCTGCCCCTGCCACCACCACCCCGCCGCC
CTCCACTGGGGAAGAGCCTATCCCGACAACAACTCAACCGCTCCCTGTCA
CCCTCCCTCCGTCCTTCCCCACCTCCCCTCCCGCCTCCGAGACTGACCCG
CCTTCACCTGGACCGGAACCATCGACCCCTGCTCCTGTAAACCCTGAATC
CACTCCGGCCCCTGTTGCGCCCCAGCCCGAGCCCGAGCCCACTCCGGCCC
CGGTCACAGACGAAAGCCCTGGCGTTGGTGCATGCGACCCGAACCCTTGC
ATGAACGGAGGGTCGTGCGAGGTGGACCCCAACGGTGGGTACACCTGCAG
CTGCGGGAGCAGCTACGGAGCGATGATGTGCGAGACCGACGTTACAGGTG
AGAGGGATATCTGCTCTCGTTGGGCACCAAAAATCGACCAACAAAGAGAG
GATTATGATTTTCTCCAACACGTGCTGTTGCTATTGTTCTCTCATGTCTG
TACTCTGAAGACAAACACGTGGAGGTTTGGGGAATACTTTCGTTCAGTAG
GAACGCGAGGGGCCGTGTGAAACGTGTTTCGGGAGTTCAGAACACGCCAC
CGCGTACACACTGCATGTAATCGCGACGTGGTGCACCAGGACATCCTCCG
GGATTGATGGTAGCGCCGGCCGTCGATGCCCATTTTGTTGTCCGAAACTT
GACAACGCGTGCCGCCTACTTGCTGTCTTCAGGCATGTCTGAGTTCTTCA
TCACGGTGGACTTCCTCGGATCGTGGACTGACGAACGCAAGGGCGTCTTC
CAAAGCGCAGCCAACAGGTAAGGCTGGGAGGTCAGCTTCATTGTAACTCA
GTCTCGTCGAGCTCAGCCTTTCGCCTGGCACAAGTTCTTGTAGAGCATGT
GTTTGCCCATGTCCGTGTTTTCATGCGCCCGGTGTGAATTTGTCGCTGCA
CCTTGCCCCGACCCTTCCTGTTCGCCCAAAACACCCGATGAATTAGGTGG
TCGGAAGTCTTGACGCGCATCCCGTGCTCCGGAACCAACGGCAACAGGGG
TGCCGCGGGCGAGCTTACCATCACCTCCACTCTTGAACCCATCGACGGTG
TCTACGGAACCCTGGGCTTCGCCGGGCCTCGCGGCACCTACAGTGACTGC
CGTGGCATCAGCTACTCCGGAGAGATGTGAGTGTGGTTGTAGTTTGTAGT
TGGATTTCTGCGTTGAATGTGGTCGATTCTCCGATAGGGCAACGTTTATC
CGCTTCATCGACACCAGGTGCAGCTGGCTGTCCGCTCTTACTACATCACC
TGCATGCAGCAAGGACTCCAATTCTAGGCTCGGTTCACCTGTTTTGACCA
CGGTATGGTCGTCGCCGCCACACCGGTCGTCGCCGCCACACCTTTACCTA
ACGTTAACGTGCTCCCGGCATCCATCGTCAGGACGTTCGACATCGACGAC
ATCGCTGAGATGGAGAGGCAGGGAACCTTCGAAGGTGTCATCCTCCACGA
GATGGGCCACGTTATCGGCACCGGGTGAGATGACATCCTTGCAGGGGGAC
GCGATTACTTGATTTGTTTGTTCCCGCAATTGTGTGTTGAACCAGAGCCA
GAAGGATGTGCTTGGCACGCCTACCCTCGTGCGAGTGTTGTGAAGGATTC
GGCCCATATCTTGCGAGGTTGCCGCTCGGGCGTCTACAGCACTTGCGGGT
TGTGGATGGGCTCTTCTCATCTATATCGAAACTCATGCATTGCTGTCCGT
TTTTGCGCTCCGTGTGTTTCTTGACGTTTACTACCAGTACCCTGTGGGGT
GAGTGTTCCGATTGTGACAGCACCAGCAGCGCGGAATGGAAGTGCCCCCT
GGCTGCCCAGGTGTACAACGACTTCATGGGAAACCCTGCTGGTTCCCGGG
CCGACATCATCGAGCTCGAAGGCGGAACCGGTGAGCTTAATGCAGGACTG
CATGGCATCGTGCATTGCGGATGCTTGTCTGCAATGATCCATGGTTCGCA
CATACGTACGTACGGAGGGGGATGCTGCTGCTTCTGATATAGTCGAGGGT
TGAGATGGCGTATCGTTCGTGTTGGACCGATTGTATCCGCCTTCCCCCTG
TAACCTGTTCTCCTCAATTGCCGGCATGTTGTGAAGCTAGCCGCAGAACA
TACGCTCGCTAACTATCAGAGTGCGTGTGTGACCTTCGTACGGTTCACGA
TTCTCAGGTACAAGCTGCGGACACTTCAGCGAATCGACTTTCAAAGATGA
ACTCATGACTGGCTACGTCAAAGCGGTACGTCGTCCAATCGTGATGCTAG
TGTCCCATCCCCTGGCAAGTGCGTGGAAATGACACCGTTTCTAGCTATTG
GCAGTTTATGGCTACGCCCGACCCGGCCCGGCGATTAACCGATGTGTTAC
GTACCTTTGGACGCAATGAGCTCATAGGAAAATCCGGTGGGATTGATAAC
ATTGGTTCGGTCTTGAGCACGAGATGAACAGAGGGACATTCACGCACAGA
ACAAGATAGCACCACCAGTCGTGTGAAACGAACGTGACGTTGACCTGTTT
CTGTCGATTGTTTCCACACGCACTGTCTTCTCGTGGATCCGGCAGGGCCA
GATGCCGCTTTCGAAGCTGACGTGCGCATCTCTGGCGGACCGAGGCTACG
TCGTCCAACCGGCCAAGGTAAGATAATTCAGGCCTCTTCCACTAGGAGCT
CATCTCCCTTCGGCTATCTCCCACGCCGCTCCTACCCGTTCACTATTGAG
CACCGGGCAACTGCTCCAATTGGTGGGGTCTAGGTACTTCCTATCTGTGT
CGTGTTTGAATCGACAATACACCAATTTCCGTGGTCACAGGCTCGACAAA
ACTTGGTCATGTGCATCGCAAATCGTTCGAAAGTAGAGTAGGTCAAGTCA
TTCGGCCGGAAGTGAGCGGTGTGCAGCAATCATTTACCTACCTGTCGCTT
GACGCGCCACGGGTCCGATGAGAGGGAGGGACAACTCGGCAGAACCAATC
GCGATAGACCGCTCTGGGCGCCCCAGAGCTGGTTTTTGACCCGTCTTTTC
TACTCACTCGTTGGTTGACGTTGTGCGTGCTTCGTATGGGCTTGTAGCCG
GAATGCTGTTTGTCCTGGGACTATGGGCTAGCGTGAAGAATGAGAATCGT
TTCCGCTCCACACTGATCACATCATGTCCACGAGCACAACAACCCGCCCT
CGCCCTCGGTTTCCTCCGCGTGTGTGACCTGGTTTTGTTCGCGCAACAGG
CGGACTCGTACACCGTTCCGTCCCGTCGGGACCCCTCCGCCCGCCAGGGC
GAGACGAAGACATACAAGCTTGCGGAGAGCACCGACGACACGACCATCGG
CGTTTGCAACGAGGAGGGAGAGATCGTCGACACCATGCAAGGGAAGCGGA
TCCGCTTCTGATCCGAACGACTGCTTGCAAGAGGAA
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Coding sequence (CDS) from alignment at chr_00:2029721..2033156-

>Ec-00_001810.1 ID=Ec-00_001810.1|Name=Ec-00_001810.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1200bp|location=Sequence derived from alignment at chr_00:2029721..2033156- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCTTCGCCCGGGACTACCCCTGCCCCTGCCACCACCACCCCGCCGCC
CTCCACTGGGGAAGAGCCTATCCCGACAACAACTCAACCGCTCCCTGTCA
CCCTCCCTCCGTCCTTCCCCACCTCCCCTCCCGCCTCCGAGACTGACCCG
CCTTCACCTGGACCGGAACCATCGACCCCTGCTCCTGTAAACCCTGAATC
CACTCCGGCCCCTGTTGCGCCCCAGCCCGAGCCCGAGCCCACTCCGGCCC
CGGTCACAGACGAAAGCCCTGGCGTTGGTGCATGCGACCCGAACCCTTGC
ATGAACGGAGGGTCGTGCGAGGTGGACCCCAACGGTGGGTACACCTGCAG
CTGCGGGAGCAGCTACGGAGCGATGATGTGCGAGACCGACGTTACAGGCA
TGTCTGAGTTCTTCATCACGGTGGACTTCCTCGGATCGTGGACTGACGAA
CGCAAGGGCGTCTTCCAAAGCGCAGCCAACAGGTGGTCGGAAGTCTTGAC
GCGCATCCCGTGCTCCGGAACCAACGGCAACAGGGGTGCCGCGGGCGAGC
TTACCATCACCTCCACTCTTGAACCCATCGACGGTGTCTACGGAACCCTG
GGCTTCGCCGGGCCTCGCGGCACCTACAGTGACTGCCGTGGCATCAGCTA
CTCCGGAGAGATGACGTTCGACATCGACGACATCGCTGAGATGGAGAGGC
AGGGAACCTTCGAAGGTGTCATCCTCCACGAGATGGGCCACGTTATCGGC
ACCGGTACCCTGTGGGGTGAGTGTTCCGATTGTGACAGCACCAGCAGCGC
GGAATGGAAGTGCCCCCTGGCTGCCCAGGTGTACAACGACTTCATGGGAA
ACCCTGCTGGTTCCCGGGCCGACATCATCGAGCTCGAAGGCGGAACCGGT
ACAAGCTGCGGACACTTCAGCGAATCGACTTTCAAAGATGAACTCATGAC
TGGCTACGTCAAAGCGGGCCAGATGCCGCTTTCGAAGCTGACGTGCGCAT
CTCTGGCGGACCGAGGCTACGTCGTCCAACCGGCCAAGGCGGACTCGTAC
ACCGTTCCGTCCCGTCGGGACCCCTCCGCCCGCCAGGGCGAGACGAAGAC
ATACAAGCTTGCGGAGAGCACCGACGACACGACCATCGGCGTTTGCAACG
AGGAGGGAGAGATCGTCGACACCATGCAAGGGAAGCGGATCCGCTTCTGA
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Synonyms
The feature 'Ec-00_001810.1' has the following synonyms
Synonym
Esi0013_0159
Esi_0013_0159