Ec-00_001790.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001790.1
Unique NameEc-00_001790.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length163
Homology
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BLAST of Ec-00_001790.1 vs. uniprot
Match: D8LED0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED0_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 1.540e-46
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    1 MSKRAEAQKQQAMEKAEQGGIERDARLGYVPDTLWETIRQRDDAKAASCPAGQMKEVMLLSMEELKQEGESDLQHGKASSAAR 249
            MSKRAEAQKQQAMEKAEQGGIERDARLGYVPDTLWETIRQRDDAKAASCPAGQMKEVMLLSMEELKQEGESDLQHGKASSAAR
Sbjct:    1 MSKRAEAQKQQAMEKAEQGGIERDARLGYVPDTLWETIRQRDDAKAASCPAGQMKEVMLLSMEELKQEGESDLQHGKASSAAR 83
The following BLAST results are available for this feature:
BLAST of Ec-00_001790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LED0_ECTSI1.540e-46100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2001261..2005636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length489
Hectar predicted targeting categoryother localisation
Gene idEc-00_001790.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001790Ec-00_001790Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2001261..2006514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001790.1Ec-00_001790.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2001261..2005636 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001790.1.1Ec-00_001790.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2001261..2001290 +
Ec-00_001790.1.2Ec-00_001790.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2001726..2001794 +
Ec-00_001790.1.3Ec-00_001790.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2001946..2002005 +
Ec-00_001790.1.4Ec-00_001790.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2002342..2002453 +
Ec-00_001790.1.5Ec-00_001790.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2002873..2003010 +
Ec-00_001790.1.6Ec-00_001790.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2003292..2003364 +
Ec-00_001790.1.7Ec-00_001790.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2005630..2005636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001790.1CDS:Ec-00_001790.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2001261..2001290 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001790.1 ID=Ec-00_001790.1|Name=Ec-00_001790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=163bp
MSKRAEAQKQQAMEKAEQGGIERDARLGYVPDTLWETIRQRDDAKAASCP
AGQMKEVMLLSMEELKQEGESDLQHGKASSAARAKATAAPGARSKSEKEK
EPPATASKSRLEVFASEEDESEDEGEDEDDQGKGEKGGSPRIPRLPRLPP
VGVEPAASPQAV*
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spliced messenger RNA

>Ec-00_001790.1 ID=Ec-00_001790.1|Name=Ec-00_001790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=489bp|location=Sequence derived from alignment at chr_00:2001261..2005636+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAAACGGGCCGAAGCCCAAAAGCAGCAAGCAATGGAAAAGGCGGA
ACAAGGGGGAATCGAACGCGACGCACGGCTTGGATATGTGCCGGATACGT
TGTGGGAAACAATTCGCCAACGCGACGACGCAAAGGCGGCATCTTGCCCC
GCTGGCCAGATGAAGGAGGTGATGCTTCTGTCCATGGAGGAGCTCAAGCA
GGAGGGGGAGAGCGACCTGCAACATGGAAAGGCGTCATCGGCAGCGAGGG
CCAAGGCGACAGCCGCACCCGGTGCGAGAAGCAAGAGCGAGAAGGAAAAG
GAGCCCCCCGCCACAGCGTCAAAAAGCCGGTTGGAGGTTTTCGCTTCAGA
GGAGGACGAGAGCGAAGACGAGGGCGAGGATGAGGACGACCAGGGCAAGG
GAGAAAAAGGAGGAAGCCCGCGGATACCGCGCCTGCCACGTCTCCCACCG
GTAGGGGTCGAACCCGCGGCAAGTCCCCAAGCCGTATGA
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protein sequence of Ec-00_001790.1

>Ec-00_001790.1 ID=Ec-00_001790.1|Name=Ec-00_001790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=163bp
MSKRAEAQKQQAMEKAEQGGIERDARLGYVPDTLWETIRQRDDAKAASCP
AGQMKEVMLLSMEELKQEGESDLQHGKASSAARAKATAAPGARSKSEKEK
EPPATASKSRLEVFASEEDESEDEGEDEDDQGKGEKGGSPRIPRLPRLPP
VGVEPAASPQAV*
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mRNA from alignment at chr_00:2001261..2005636+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001790.1 ID=Ec-00_001790.1|Name=Ec-00_001790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4376bp|location=Sequence derived from alignment at chr_00:2001261..2005636+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCAAAACGGGCCGAAGCCCAAAAGCAGGTAAGTGCTGTGACAGCGTC
TCATACGTTCTGATTTTCACCCAACGGGGTGAATTCAGCTGAGCAGAAAC
TATGAAACTACATTGTGTACACGGTTCTATCCCTTTGATGGTCTCTTGAC
ATCTTCTAACCTCGTGATCATTCCCGATGTTGCCGCCGGCTGCAAACCCC
CGTGCCCGCACCCCCACCTTCCAACCCTGCCCTGCAGCTCGAGCGCTTGG
GAATGCTCTCTGTGCACGACACCTTAATCAGGCAGGAAGAGGCGGTAAAG
AAAGTCATCAACGAGGCCACAAACAAAATAGACGTCTTACGGTGGACGGT
GAACGGTCAAGAGAATGTTTTCTCTACGTAATATTAGACCGTTCCCTGGT
CTTACACATTGTTCTGAAATACCATAGAACCGTGCCGTTTCCTGTTCACG
CAAGTCTCATGACAGCAAGCAATGGAAAAGGCGGAACAAGGGGGAATCGA
ACGCGACGCACGGCTTGGATATGTGCCGGATACGGTGCGTTTCCGGCTTT
CGACTCCTACACTTTCTTCCCCATTCGATATCATGCCGCGCTTTTTCTCG
CTTGCCGCACACTACACAAATACTGTGGTTGGCTACAAGGATATCGAAAT
TGGGCCACTGAAACGAAATCTACATGAGGGCGCAGTTGTGGGAAACAATT
CGCCAACGCGACGACGCAAAGGCGGCATCTTGCCCCGCTGGCCAGGTGAG
ATGCCGCCTTTTCCTCGTCGCGTAGCGGGGCGAGATACCGCCTTTTGCTG
CGTCGCGTTGGTGAATCTGTTGCTGCTGGGCTGAGGCCCCTTCTCATCGT
CCTTCACCGCGGCGGTGTGGTCTGGTGCTGCTGCGACGGACGGCATGTCT
GTGCGGTGGATTTTCACTCCCTACAGTAGCATGCCGTCTATCGCAGCAGC
AACAGACAACACCGCTCCGGTTATGGAAAATCAGAATGGGCCTCAAGCCC
ACCAGCAGCAAGTCCACGAGGGCTCCGGCGCGGCCGCGGCCACTAACGTT
GACTTGGACAAGGAAGGGTTCGGCCTGGCAGATGAAGGAGGTGATGCTTC
TGTCCATGGAGGAGCTCAAGCAGGAGGGGGAGAGCGACCTGCAACATGGA
AAGGCGTCATCGGCAGCGAGGGCCAAGGCGACAGCCGCACCCGGTCAGAT
CATGAATTGTTCCTCGAGGTATCGATGTCGGCACCAACCGCTGTAGGCTC
GATTTACATCTCGTCACCAGGGGGCCCTGAATACCGCTCCCTGATATTTG
GGTATCAACACTGCCCGTTCAGTGTTTTGGCGATGTAACAGGAAGGAGAG
CACCCTATGCTTATGCCGAAGCGAGTGAATCATCCAACGTGATCAAGAGC
TCTAACCGGAATCTAGAAGGCCGTTTGTATCGAGATCGACCGCCGCCAGA
GTGCCGTTGAAGTCAAACATGTAGCAAAACACGTTCTGTGGCAAGATGAG
CGGAGTGTGACCCGGGTATTTACGCAGCAATACCGTAAGTGCTCTCGCCA
CCGTCAGGCGTTCTGACCAACCCCTTTCACCACCCACCCCGCTTCCTCCT
CGATGGTGTCAGGTGCGAGAAGCAAGAGCGAGAAGGAAAAGGAGCCCCCC
GCCACAGCGTCAAAAAGCCGGTTGGAGGTTTTCGCTTCAGAGGAGGACGA
GAGCGAAGACGAGGGCGAGGATGAGGACGACCAGGGCAAGGGAGAAAAAG
GTGAGTTCACTTCACAGTACGTACTACCGCAGTTCGGTTCTCCCTCTCCT
GTGAACAGGACCATCCTCTCTACCCGTCACGCCCCCTTCGTGTCGCCGGC
GAACGTCTTACGGATTCCGCCCCGGGTTTTCTATGTAGGGTTACGGCGTT
CTCTGCAGTCAATACAGTGAAGGTGATCCAGTTGTCCGTTTTCGTTATCA
AGAAGTAAACTAAGATTCGCTCTCCTGCGTTGCTCGCGCACTCACTCTCC
TCCACCTGTCTCCCGACACGTACCGATGCAGGAGGAAGCCCGCGGATACC
GCGCCTGCCACGTCTCCCACCGGTAGGGGTCGAACCCGCGGCAAGTCCCC
AAGCGCAAGTCACGGCCGTGCCAACAATGAACACGAAGAGCGCTAGTCCG
ACAGGGCAATTGGCGGTGTTGATCATACCGGGCTGTGCACAGAATAGGGC
TCCGGTGTGCACTTAACGCAAAACTTCGTCGTGTGAACGCTTGGTACTTT
GAGGAGGGGAAGACCTATATATTTGTCCCTGTAGAAGTAGATCAGGCTAC
AAGTATGTACGAGGGTACTACTGTATCAGAAACACTCCAATTTGTAAGAG
ACCAGGAGAGTTTCACAAAGGCCTCGTCTTCCTTCCATGTAGTTGTGGGC
AGCAAAAAACAAAACACCGGGACAGATTTAACTTGGCATCCACCGATCAG
CTGTCTCGATTTACCTTGGCGCCTACTTTGTGGTGTCTTCTTTATTATGG
AGTATTTTTGTCTATTTCGCCGCTTGCTTGGGCACCGCATTCTACGAAAC
CACTTCACAGACAAACACCCAACAGCCGTGATCCTGGGAGCTGCAATTGT
TCATTGTGATCTGTTTTGTTTGTTCTTCGCTCTCTTGACTCTATCTGAGG
TCTAGGGAATGAACGCCCAAAAGCAATCATCACGAATCATCTCTTTGGCA
TGTTGAACAACCGGCATGGCAGCATATCTGCACGGTGATTTTTTTCTTTC
CCGCAGCGGTAACGACACCTCTGCCCTGGTGTCTCCTTTCCTTCATTTGC
TCAACAGAGTTGTAACATTCTGAAAGCATACGGCCCGCAGATAGACGGGT
TTCACACATGTATTGACGGGCTTCTCGCGGGTGCTTTAGCGCTAAAACTC
TGTCTCACGTCCTAAAAAATGACGCCTTTTGACATATCCTGTTCCCGTAT
GACTCTCCTTGGTCAACACCCAGCCTCCTCGTGTTTGTATTGGTCATGTG
ACGTGGAGAGCTCGTGTCAGAGATTGAGAAACCACGGGACTGGTGGGGCA
AGTGTCAATAATAATAGTCATGCTTGGTGCTGCCTGCACTACCACCAGGG
ATTTTTCTTGTCTCATTCACCGCACATGCCACCGTTCTCCCAAGCATCTA
CTGTGTTTTACACAAACGCCTCGTTTTGTTGGTCGGCCTTCGCCGTAACA
TACCTAGTACAGACCCCAAGAAACAAATGAACTATTCATACACCCCAACA
AGAATACCAACGAGGAGAATATCAAAGAATCGCTCAACACGGTGTGGCAG
GAGTCAGACCTGTAGAAAAACTTGCACCCAGCGCGCCGCATTTCTTCAGA
AATGAATGGGGACAACTCAACGATTGCCAAAGTATCTTGAGGTTCCATCG
TGAACGGTGGTAGCCCATCCGGTTGAGTCCCGATTGAGGTGTTCGTGAGT
GAATGGGTTGAAACGAACCATGTATGCGAGAGGATTGGGAACCTGGGTTC
AGCATCAAAATGATCAAATAATTCCATTATCTACTGACCTTTGAATCCAT
TCAACCCTTACAATAGGTGTTTTGAGGCGAGTACGCACTAAATAATCTTT
GATAATGCTAGAGTGGGGTTCGCTCCTTCGTCACGCAGCAATCACATCAC
TCTCATCTGTCTCGTGCTCTCTGTAGGACGAACAGCGTGCAGACGAAGCA
AGCGGGTTCGACGCCATGTTCACACCGTAGTCTAATCGATCATACCTCGA
ACGGCGACAATGCTGAAGAAACATTATTGTGGTAGGCGGTGTACAACACG
CGTTTGGAAACCTCTCGGGAAGCATGCTGAAAGAGAGGAAGCCCATCGAC
AGAAAATAACTCACTCGGCTGCTCGTGCTGCGATTGGTGTGAGTCTGTTT
ACGTTTCGTTGCCCCGCGCCTCCACTAAGGCTACGCATACCCGTGCCCTT
TCGAGGGAAGCCAATCACGTAGTACCCGGCCAAAATACGAGTGTACCCCG
CCCTTCCTTTCTCCCTCTAACACGGAACGCCTATTCGATATACTCGTAGC
ATAGCATGGGGGTGGTATATTGCGTATACATATGCGGGGATTGCAGTGAC
GAACTACGGAGGGACAAGAAGTTTCTTTGTGTTTTCCTTGGGAGTGTAGT
AGATTGGTGGAGATTCATGGAGATTCGTTCTGGGTATTAAAGGGTTATGC
GTGACTTGATGCCGTGATGGAATGACGAGCTCAAGCACGCCCCCGATGAA
TACAACACGTTTTTCACCACGTCTACACGTCTTTACCTACCCGTGCGGCC
CGTCATGGCCGAGCTGCTCTACGCTCCCATCACACACAACTGAGCCACCC
GAATTATCGATCACGCTAGCGTATGA
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Coding sequence (CDS) from alignment at chr_00:2001261..2005636+

>Ec-00_001790.1 ID=Ec-00_001790.1|Name=Ec-00_001790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=489bp|location=Sequence derived from alignment at chr_00:2001261..2005636+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCAAAACGGGCCGAAGCCCAAAAGCAGCAAGCAATGGAAAAGGCGGA
ACAAGGGGGAATCGAACGCGACGCACGGCTTGGATATGTGCCGGATACGT
TGTGGGAAACAATTCGCCAACGCGACGACGCAAAGGCGGCATCTTGCCCC
GCTGGCCAGATGAAGGAGGTGATGCTTCTGTCCATGGAGGAGCTCAAGCA
GGAGGGGGAGAGCGACCTGCAACATGGAAAGGCGTCATCGGCAGCGAGGG
CCAAGGCGACAGCCGCACCCGGTGCGAGAAGCAAGAGCGAGAAGGAAAAG
GAGCCCCCCGCCACAGCGTCAAAAAGCCGGTTGGAGGTTTTCGCTTCAGA
GGAGGACGAGAGCGAAGACGAGGGCGAGGATGAGGACGACCAGGGCAAGG
GAGAAAAAGGAGGAAGCCCGCGGATACCGCGCCTGCCACGTCTCCCACCG
GTAGGGGTCGAACCCGCGGCAAGTCCCCAAGCCGTATGA
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Synonyms
The feature 'Ec-00_001790.1' has the following synonyms
Synonym
Esi0013_0153
Esi_0013_0153