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Homology
BLAST of Ec-00_001680.1 vs. uniprot
Match: A0A6H5K884_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K884_9PHAE) HSP 1 Score: 616 bits (1589), Expect = 3.060e-220 Identity = 342/375 (91.20%), Postives = 348/375 (92.80%), Query Frame = 1
Query: 22 DDPQQQVETISHRLQTKKGGDAGAXXXXXXXXXXXXXX---SNAQSHHADAPSIPTKSTSKSSTKNARKNVAGSKQKTGTEKTYSFQWDEEFLLPGVSDSATIIFTVLHQAPTRAVCLGQTFVEPKRFKKNMEHVCTVALAKKQVEVPSAPHNRGEEATIANIDSAKPGKLTFTIRKASSCDAHCSEVNGPIAEEISTLALAEGQVRGRQNESTPPVIGHTKERDGNTHASHDEKNSHG-SKSKQQATAAPTTTPPRGRLGATGKTGTTMKVGDLSTVWWVCVWQGVLKIFRNLGDAQAKLTLPLDRWTIAPAEEEPGGRPARPDLWLVSASPKRCLVLRCVSKVDKLRFEEIIARNQACLIQRAPAIVETSAES 1134
DDPQQQVETISHRLQTKKGGDAG XXXXXXXXXXXXXX SNAQSHHADAPSIPTKSTSKSSTK+AR+ VAGSKQK GTEKTYSFQWDE ATIIFTVLHQAPTRAVCLGQTFVEPKRFKKNMEHVCTVALAKKQVEVPSAPHNRGEEA IANIDSAKPGKLTFTIRKASSCDAHCSEV+GPIAEEI+TLALAEGQVRGRQNEST VIGHTKERDGNTHASHDEKNSHG SKSKQQATA PTT+PPRGRLG TGKT TTMKVGDLSTVWWVCVWQGVLKIFRNLGDAQAKLTLPLDRWTIAPAEEEPGGRPARPDLWLVSASPKR LVLRCVSKVDKLRFEEIIARNQA L QRAPAIVET+ ES
Sbjct: 35 DDPQQQVETISHRLQTKKGGDAGXXXXXXXXXXXXXXXXXXSNAQSHHADAPSIPTKSTSKSSTKHAREKVAGSKQKAGTEKTYSFQWDE----------ATIIFTVLHQAPTRAVCLGQTFVEPKRFKKNMEHVCTVALAKKQVEVPSAPHNRGEEARIANIDSAKPGKLTFTIRKASSCDAHCSEVHGPIAEEINTLALAEGQVRGRQNESTSSVIGHTKERDGNTHASHDEKNSHGGSKSKQQATATPTTSPPRGRLGTTGKTATTMKVGDLSTVWWVCVWQGVLKIFRNLGDAQAKLTLPLDRWTIAPAEEEPGGRPARPDLWLVSASPKRWLVLRCVSKVDKLRFEEIIARNQAGLAQRAPAIVETTVES 399
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Length | 1143 |
Hectar predicted targeting category | other localisation |
Gene id | Ec-00_001680.1 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_001680.1 ID=Ec-00_001680.1|Name=Ec-00_001680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=381bp MPRARSRDDPQQQVETISHRLQTKKGGDAGASSPPAAGHAHHHHHSNAQS HHADAPSIPTKSTSKSSTKNARKNVAGSKQKTGTEKTYSFQWDEEFLLPG VSDSATIIFTVLHQAPTRAVCLGQTFVEPKRFKKNMEHVCTVALAKKQVE VPSAPHNRGEEATIANIDSAKPGKLTFTIRKASSCDAHCSEVNGPIAEEI STLALAEGQVRGRQNESTPPVIGHTKERDGNTHASHDEKNSHGSKSKQQA TAAPTTTPPRGRLGATGKTGTTMKVGDLSTVWWVCVWQGVLKIFRNLGDA QAKLTLPLDRWTIAPAEEEPGGRPARPDLWLVSASPKRCLVLRCVSKVDK LRFEEIIARNQACLIQRAPAIVETSAESIS* back to topspliced messenger RNA >Ec-00_001680.1 ID=Ec-00_001680.1|Name=Ec-00_001680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1143bp|location=Sequence derived from alignment at chr_00:1908664..1913731+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.
ATGCCTCGCGCTCGCTCTAGAGATGATCCCCAGCAGCAGGTAGAGACAAT ATCCCACCGACTCCAGACCAAGAAAGGGGGAGACGCAGGCGCCTCGTCCC CCCCCGCGGCCGGTCATGCCCACCACCACCACCACAGCAACGCCCAAAGC CATCACGCCGACGCTCCGTCGATCCCGACGAAGTCTACGTCAAAGTCGTC TACGAAGAACGCTCGAAAGAACGTTGCGGGTTCGAAACAGAAGACTGGCA CTGAAAAAACCTACAGCTTTCAGTGGGACGAAGAGTTTCTGCTTCCCGGG GTGTCGGACTCAGCGACGATCATCTTCACGGTTCTCCACCAAGCGCCAAC GCGGGCGGTGTGCCTGGGACAGACGTTCGTGGAGCCAAAGCGGTTCAAGA AGAACATGGAACACGTGTGCACCGTCGCCCTCGCGAAGAAGCAGGTGGAG GTACCCTCCGCACCGCACAACCGCGGAGAGGAGGCGACAATCGCCAATAT TGATTCGGCGAAACCAGGCAAGCTCACGTTCACGATAAGGAAGGCCTCGT CCTGCGATGCGCACTGCTCGGAAGTGAATGGGCCCATCGCCGAAGAGATC AGCACGCTGGCGCTTGCGGAGGGCCAAGTGCGTGGGCGGCAGAACGAGTC AACTCCCCCCGTCATAGGCCACACCAAGGAGAGAGATGGGAACACGCACG CTAGTCACGACGAGAAGAATTCGCACGGTAGCAAAAGCAAACAACAAGCT ACCGCCGCCCCTACGACTACACCGCCGAGAGGGCGGCTGGGTGCCACTGG AAAGACCGGCACCACGATGAAAGTCGGTGACTTGTCCACCGTGTGGTGGG TGTGCGTGTGGCAGGGTGTGCTGAAGATTTTCCGAAACCTGGGGGACGCG CAAGCTAAGCTGACCCTGCCCCTCGACCGGTGGACCATAGCACCGGCTGA GGAAGAACCCGGCGGAAGGCCTGCAAGACCTGATCTGTGGCTCGTCTCCG CTAGCCCCAAGAGGTGTCTCGTTTTGCGATGCGTCTCAAAAGTGGACAAG CTGCGATTCGAGGAGATCATCGCCAGGAACCAAGCATGCCTCATACAACG TGCACCCGCCATCGTGGAGACATCCGCCGAGTCGATATCATAG back to topprotein sequence of Ec-00_001680.1 >Ec-00_001680.1 ID=Ec-00_001680.1|Name=Ec-00_001680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=381bp
MPRARSRDDPQQQVETISHRLQTKKGGDAGASSPPAAGHAHHHHHSNAQS HHADAPSIPTKSTSKSSTKNARKNVAGSKQKTGTEKTYSFQWDEEFLLPG VSDSATIIFTVLHQAPTRAVCLGQTFVEPKRFKKNMEHVCTVALAKKQVE VPSAPHNRGEEATIANIDSAKPGKLTFTIRKASSCDAHCSEVNGPIAEEI STLALAEGQVRGRQNESTPPVIGHTKERDGNTHASHDEKNSHGSKSKQQA TAAPTTTPPRGRLGATGKTGTTMKVGDLSTVWWVCVWQGVLKIFRNLGDA QAKLTLPLDRWTIAPAEEEPGGRPARPDLWLVSASPKRCLVLRCVSKVDK LRFEEIIARNQACLIQRAPAIVETSAESIS* back to topmRNA from alignment at chr_00:1908664..1913731+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Ec-00_001680.1 ID=Ec-00_001680.1|Name=Ec-00_001680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5068bp|location=Sequence derived from alignment at chr_00:1908664..1913731+ (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGCCTCGCGCTCGCTCTAGAGATGATCCCCAGCAGCAGGTAGAGACAAT
ATCCCACCGACTCCAGACCAAGAAAGGGGGAGACGCAGGCGCCTCGTCCC
CCCCCGCGGCCGGTCATGCCCACCACCACCACCACAGCAACGCCCAAAGC
CATCACGCCGACGCTCCGTCGATCCCGACGAAGTCTACGTCAAAGTCGTC
TACGAAGAACGCTCGAAAGAACGTTGCGGGTTCGAAACAGAAGACTGGCA
CTGAAAAAACCTACAGCTTTCAGTGGGACGAAGGTAAGAAAACGAACGAA
TTTTGGCCGTGCTTGTTGGAATGAACCGCATGTCTTGGCATTTTGGTCTC
AAGTCCATACGATGTGATCCATTGGGAGAAAACACGAAATCGACCGTGTT
TGTGTTGCTAGCATACAATGTTGTATTGTGATGTCTTGGTCTCCAAGTCT
CACGGAGACAGCTTTCGACTTCATACGCGCGCGTTGCAAAAAGCCCATCA
TGATCGCAAACGCATCCATGCGGCAACGTTTACCGTGGCTTGCGTGGTCC
TGGAGAACCCCGCAGCTCTCTGCCCTAGCCTTGTTCGGATGTTTAACTCT
TCGGCGGAAAGACTATTGGCCGTGCCTGATAGGGTTGGCGTAGTCATAGC
TCAGAGATGGGTTGCGAGCAGAAACTTACCAAGGAAAGCATCAGATGTGA
GCCCCTTCCTCCTCTTCATCGCATGCCATGCTCCAGAGTTTCTGCTTCCC
GGGGTGTCGGACTCAGCGACGATCATCTTCACGGTTCTCCACCAAGCGCC
AACGCGGGCGGTGTGCCTGGGACAGACGTTCGTGGAGCCAAAGCGGTTCA
AGAAGAACATGGAACACGTGTGCACCGTCGCCCTCGCGAAGAAGCAGGTA
CTGTAGATCCGTGTTTGGAGGAAGAGCGTCAGACGCGGCAGTGGTGTGGG
TTGAGGTAGCTCGTTCGTTAGTCACGGGTTGTGGGGGGTGGAAGACGGGC
CCGCTGTACTTGAGTTGTGCCCGTCTCCCTTTTCCTTACACTTGCGTTTG
TGGCTCTTCGCCTCTGTGGAAAGAACCAAGCCCATACTTGTACGTGAGGC
ACGAATTTTCTTCGATGACACCGCCGTGGCACCCACAGAATCCGCCTCTT
TCGAAGCACAATACTCAACTTTTCACCCTTTGGTCGCGGCAATGCACTTT
TCGAGGATCGTATGCGATCATTTCCTCACTTTTTTACATGGTGCCAGCAC
CCTTTTCCTAATTCTCGAGGATCGAAGATCCTAGTTGCGTTGTCGTTCTG
CTTTTCACTCAAATTCCTCGGCATGGCAGCGTATAATCGCCTCCTTCGGC
TTTTCCCGTCCCTCAGCGGATAGCGATGTCGGAATTCGTGCTCCAGTGCT
TCCACCACTGGTCACTGAGTCCAAGCCTCTCACCCTTAGCTACCAATATT
GTCCACAGCCCGTGCGTGAGGTCTGCCCGTTCCACCTATGCAGCATCGAT
CAGGGGCCGACTGATGTATTGCTCGGCGTGAGACATTGTGTTGTGTGAGG
CATCGGAAACACGCCGAGCGACATGCAATAGTTTCCATGGCGTGGTTTCA
TTGCTTGGACAGCAGTAGGCTGGTGTCCCTTCGACGGAAGCTCGTAACCA
CGTTAAAGGCAGTTCCCGCACCGGCCGGCTGATGTACTGCTCGGCGTGAG
ACATTGTGATGTGTGAGGTATCGGAAACACGCCGAGCGACATGCCATAGT
TTCCATGGCGTGGTTTCATTGCTTGGACAGCAGTAGGCTGATGTCCTTCG
ACGGAAGCTCGTAACCACGTTAAAGGCAGTTCCCGCACCGGTTTTCCCCT
GTCTGTCTAGGTGGAGGTACCCTCCGCACCGCACAACCGCGGAGAGGAGG
CGACAATCGCCAATATTGATTCGGCGAAACCAGGCAAGCTCACGTTCACG
ATAAGGTGAGGAATTGGAAATTAAGGCCGGGGGGGGGGGGGGTTCTCATG
GTGTGCTTGATGCAGCCGTTCGACCGACAGGAACTCGCCCCCGAGATGAT
GGACTCATTTCACCCCGAACACAGAAATTTCTGCAACTTTTGCGCGACAA
ATAGTCTGCTTGGACATATCTCCCGCTCCTCACAAGCGACGGCGATCTTG
TGCTCGCCCGAGTTTCATCCAAATCCAACCATGTCGCATCAGCATCAAGT
TCCGCACCTCTTCCGCCACTGCGTCAGATTTCGCCACAGTGTACAAACAC
ACTGACCATGGGGCCTACATGTAGTGTGATGCTCCAGCCTTATGTAAACG
ATCAAGATACATCCGTCCCGGCCCAAGAAAGTCCGATCCAGTCGGGACAA
GGGCGTTGGTCGGGTAGAATCTTGGTCGGGCCGTCGCTTGGTGGCCACCC
GCGCCATAATGCTCCCGCCCAACGATTTTTTCAGTGACGCTAAAGAGCCA
TAGAAGAATGTCCAGTGCACACTGCATCGACAGCTTTCTGTTCGTACGTC
TGTTCACAGAGGCACGATATCGACATCCTTGTAGACCTTTCCACTCAAGA
TGTAGTACTGAGAGCTACTTTAACGTACCCGCCAACAACCCCAAGTTTCT
TTTCTTCGAAATTCATCTCATTCCAATTTGTCGTCTATTATACTATACCC
CACCACCATTTTCCAAACTCTTCTTCCAAACATGGAAACATTGGCCTTTA
GCACGCGCACGGGTTCAGTTCATTCGATTAACCCGCACTGCTCGTCTGTG
TGATGCCATGACCGTGGTCGGGTCTCAACTCTGTTGCTTTTTGTCCTCAT
CAGCCATACATATACGTGTTCCGTGGTTGTTGTCTTGTAGGCGACGCTGG
CATAACACTTGATTGGGATGCCTGTATCATACCCAAAAGCGTCTATTATG
ACTATTTCATCATGTTACGCGGACGTGCGGTTTTGTGTGCAGGCAGCTTC
AATCACCCCGTAAGCTAAGGAGGATGATGACCCCCATCCTCACGCAACGC
GTAACCCCAAGCAAGTAGAAATTCACTTTAGCGCACTAACATGACTTGCT
TCCTGGTGTTTTTGACGTTAAACGATTTGTCTTGTCTATCTCAGGAAGGC
CTCGTCCTGCGATGCGCACTGCTCGGAAGTGAATGGGCCCATCGCCGAAG
AGGTACATGTTTTGCTGGTATGCCAACGGTTGTTTGCCGATAGCTCACGT
GCATAGGTAGCGTAGGGTAGATACGATAGACACGAAAGCGAAAGAACTGC
TTCATGACGGCATCAGGAGGCCTTAGAAAGATGAAACTTGGGACGGAATA
GTCATGAGGGGTGATAATCAAGCACGATGGGCTACAGCAGTAGAAATAAG
TATTTACTCCCGACCTAGAAGTTGTCACCCAGGCACTCGATGAGAATACG
GTTCCATGGTATCTCTCGTCACGCCGATCGCCACGTCCGATCAGCATTTG
CCACGTCCATCGCACTAACCCAAACAACACCATCCCAATCGCCAAGATAA
GCACAACCAACAGCAACATTCTTCCCTCCTCTATTTCATCCCCACCTCTT
CTCGTGACTCCGCGGTGTGACAGATCAGCACGCTGGCGCTTGCGGAGGGC
CAAGTGCGTGGGCGGCAGAACGAGTCAACTCCCCCCGTCATAGGCCACAC
CAAGGAGAGAGATGGGAACACGCACGCTAGTCACGACGAGAAGAATTCGC
ACGGTAGCAAAAGGTGACCGAAAATGAAGCAGCGTCGAACGAATATCAGT
CGCCGCTGTTCAAGGCTCGAGATACACAGTTTCACGGAGAAATGCACTTT
CGTGTTTGTATACTCTCTTTCATGAGCTAATAACCGGCAAGGATCAACAA
CGATGCGGCCGCGTCACCACAAACAAGAACCAACCAACGGCCCATGTTCA
TCAATCGCGCGCAGCAAACAACAAGCTACCGCCGCCCCTACGACTACACC
GCCGAGAGGGCGGCTGGGTGCCACTGGAAAGACCGGCACCACGATGAAAG
TCGGTGACTTGTCCACCGTGTGGTGGGTGTGCGTGTGGCAGGGTGTGCTG
AAGATTTTCCGAAACCTGGGGGACGCGCAAGCTAAGGTAGCTGAACCAGA
TTGTGCAGTGGCAGTGGCAGTAGTCGTGGTCTTGGACGTGCTTGATGTTG
CCCCGAAGACATCGCACTGCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTC
GCGCGCGGGCCGTGCCGGGAACGCTGCAGTCGGAGCACTTTCTCCTCTAC
TCATAATTCTTGCGTGCTTTCCCCTAAAAACAACAATAGCCCTGATCGTT
TCGCATTGCCTTGAAGATCAAAATGCGTACGTTTTCAACTTCCCATTTTC
TCCTGTTGTTGTTTTCATTGTTGTTTCACTCGCTATATTTGGTCTCCAGT
TACTCATCCGCCCGCGCAATCCGAAAGCCGCGCCCCCTGGCGCAACCTAA
CCTAGAATCCGCTCTGAAAACCCTGTCGCACATGCCATAACGTGTAACTA
TAACAGCTGACCCTGCCCCTCGACCGGTGGACCATAGCACCGGCTGAGGA
AGAACCCGGCGGAAGGCCTGCAAGACCTGATCTGTGGCTCGTCTCCGCTA
GCCCCAAGAGGTTCGCGAGAGCGTGGGTCGTGGCTTTGGAAAGGCTGTAC
AATGTTTTGTTTCAGTGGCCTCTATAGTTTGGGGTGGGAGGTGTGCTCTT
GTTTCCTTCGGTGGCCTGTGTTGTAGGGTAGGCGTCATTGACTCTTTTCG
TTCGACAGCGGGCCGGAGCGTGGTCCAGTATCGACAGCGGCAACTCGTGA
AGTATGTGGAAGGCCGTGTCTCACGTCCACGTTCGGCCGGCTCGCAAGAA
AGCAAGTATGGTAGCGTGCGAGGCAAACGGAGGCAAGACACATATATCGC
CACCGGCCTAACCGCTTTTTCCTTCAACCTGACCGCAGGTGTCTCGTTTT
GCGATGCGTCTCAAAAGTGGACAAGCTGCGATTCGAGGAGATCATCGCCA
GGAACCAAGCATGCCTCATACAACGTGCACCCGCCATCGTGGAGACATCC
GCCGAGTCGATATCATAG back to topCoding sequence (CDS) from alignment at chr_00:1908664..1913731+ >Ec-00_001680.1 ID=Ec-00_001680.1|Name=Ec-00_001680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1143bp|location=Sequence derived from alignment at chr_00:1908664..1913731+ (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGCCTCGCGCTCGCTCTAGAGATGATCCCCAGCAGCAGGTAGAGACAAT ATCCCACCGACTCCAGACCAAGAAAGGGGGAGACGCAGGCGCCTCGTCCC CCCCCGCGGCCGGTCATGCCCACCACCACCACCACAGCAACGCCCAAAGC CATCACGCCGACGCTCCGTCGATCCCGACGAAGTCTACGTCAAAGTCGTC TACGAAGAACGCTCGAAAGAACGTTGCGGGTTCGAAACAGAAGACTGGCA CTGAAAAAACCTACAGCTTTCAGTGGGACGAAGAGTTTCTGCTTCCCGGG GTGTCGGACTCAGCGACGATCATCTTCACGGTTCTCCACCAAGCGCCAAC GCGGGCGGTGTGCCTGGGACAGACGTTCGTGGAGCCAAAGCGGTTCAAGA AGAACATGGAACACGTGTGCACCGTCGCCCTCGCGAAGAAGCAGGTGGAG GTACCCTCCGCACCGCACAACCGCGGAGAGGAGGCGACAATCGCCAATAT TGATTCGGCGAAACCAGGCAAGCTCACGTTCACGATAAGGAAGGCCTCGT CCTGCGATGCGCACTGCTCGGAAGTGAATGGGCCCATCGCCGAAGAGATC AGCACGCTGGCGCTTGCGGAGGGCCAAGTGCGTGGGCGGCAGAACGAGTC AACTCCCCCCGTCATAGGCCACACCAAGGAGAGAGATGGGAACACGCACG CTAGTCACGACGAGAAGAATTCGCACGGTAGCAAAAGCAAACAACAAGCT ACCGCCGCCCCTACGACTACACCGCCGAGAGGGCGGCTGGGTGCCACTGG AAAGACCGGCACCACGATGAAAGTCGGTGACTTGTCCACCGTGTGGTGGG TGTGCGTGTGGCAGGGTGTGCTGAAGATTTTCCGAAACCTGGGGGACGCG CAAGCTAAGCTGACCCTGCCCCTCGACCGGTGGACCATAGCACCGGCTGA GGAAGAACCCGGCGGAAGGCCTGCAAGACCTGATCTGTGGCTCGTCTCCG CTAGCCCCAAGAGGTGTCTCGTTTTGCGATGCGTCTCAAAAGTGGACAAG CTGCGATTCGAGGAGATCATCGCCAGGAACCAAGCATGCCTCATACAACG TGCACCCGCCATCGTGGAGACATCCGCCGAGTCGATATCATAG back to top
Synonyms
The feature 'Ec-00_001680.1' has the following synonyms
Synonym |
Esi013_0253 |
Esi_013_0253 |
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