|
Homology
BLAST of Ec-00_001640.1 vs. uniprot
Match: D8LEB8_ECTSI (Putative decarboxylase family protein, lysine decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB8_ECTSI) HSP 1 Score: 516 bits (1328), Expect = 1.550e-176 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1
Query: 235 MPRSRDGKHTFCVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRAGCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVKDLRVVGGQGLQERKRMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDVPICVLDVEDFYAGFKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWCVSQLGAPGRDHKPNRRLERTTSGVNPPTTTSWSNSDRFMWACSVIACSGALTLAMTALRR 969
MPRSRDGKHTFCVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRAGCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVKDLRVVGGQGLQERKRMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDVPICVLDVEDFYAGFKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWCVSQLGAPGRDHKPNRRLERTTSGVNPPTTTSWSNSDRFMWACSVIACSGALTLAMTALRR
Sbjct: 1 MPRSRDGKHTFCVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRAGCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVKDLRVVGGQGLQERKRMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDVPICVLDVEDFYAGFKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWCVSQLGAPGRDHKPNRRLERTTSGVNPPTTTSWSNSDRFMWACSVIACSGALTLAMTALRR 245
BLAST of Ec-00_001640.1 vs. uniprot
Match: A0A836CF56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF56_9STRA) HSP 1 Score: 229 bits (584), Expect = 1.520e-66 Identity = 104/182 (57.14%), Postives = 128/182 (70.33%), Query Frame = 1
Query: 262 TFCVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRAGCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVKDLRVVGGQGLQERKRMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDVPICVLDVEDFYAGFKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWCVSQLGA 807
T CVYGSSS TPQ YLD + +LG+LL++GGH C+NGAG+ GCMGALNDGV + GRVRGVIH W+VD +EHP + DL VV G LQERK+ L+ G D I+ALPGG GTWDE+WEM C +GIG VPI ++ + FY GF Q +RA D LLY L+HFE D A+ WCV + +
Sbjct: 5 TVCVYGSSSPRTPQKYLDESHRLGHLLSEGGHLCINGAGKHGCMGALNDGVQQANGRVRGVIHAKWVVDQAEHPNIMDLIVVEGDDLQERKKALVHGVDVIIALPGGPGTWDEMWEMACQRGIGFSGVPIVAVNTDGFYDGFVQQLQRADKDGLLYLPPKDLVHFEPDAESALRWCVEHINS 186
BLAST of Ec-00_001640.1 vs. uniprot
Match: A0A7S4K7G2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4K7G2_GUITH) HSP 1 Score: 192 bits (487), Expect = 3.640e-52 Identity = 92/200 (46.00%), Postives = 126/200 (63.00%), Query Frame = 1
Query: 268 CVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRAGCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVKDLRVVGGQGLQERKRMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDVPICVLDVEDFYAGFKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWC-----VSQLGAPGRDHKPNRRLERTT 852
CV GSSS +TP+ YLD +++LG LLA+ GH CVNG G+ GCMGALNDG G GVIHEM++VD EH + + V G L ERK++L+EGADC++ALPGG+GTWDELWE+V +G ++PI V++ FY FK +A D+L+Y + L+ FES A+ + ++ G G+ R+ RTT
Sbjct: 19 CVCGSSSSSTPKAYLDASKELGRLLAERGHICVNGGGKTGCMGALNDGCIHAGGTTIGVIHEMFVVDGEEHTGLTQMIVARGDCLAERKKLLVEGADCVIALPGGVGTWDELWEVVAEVSLGFKNIPIVVINTNGFYDSFKAMLAKAMEDKLIYKGPETLVRFESSVVAALNFAERMHVANKDGLSGKTSSSGRKEHRTT 218
BLAST of Ec-00_001640.1 vs. uniprot
Match: L1K3Y6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K3Y6_GUITC) HSP 1 Score: 187 bits (476), Expect = 1.970e-51 Identity = 86/174 (49.43%), Postives = 116/174 (66.67%), Query Frame = 1
Query: 268 CVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRAGCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVKDLRVVGGQGLQERKRMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDVPICVLDVEDFYAGFKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWC 789
CV GSSS +TP+ YLD +++LG LLA+ GH CVNG G+ GCMGALNDG G GVIHEM++VD EH + + V G L ERK++L+EGADC++ALPGG+GTWDELWE+V +G ++PI V++ FY FK +A D+L+Y + L+ FES A+ +
Sbjct: 4 CVCGSSSSSTPKAYLDASKELGRLLAERGHICVNGGGKTGCMGALNDGCIHAGGTTIGVIHEMFVVDGEEHTGLTQMIVARGDCLAERKKLLVEGADCVIALPGGVGTWDELWEVVAEVSLGFKNIPIVVINTNGFYDSFKAMLAKAMEDKLIYKGPETLVRFESSVVAALNFA 177
BLAST of Ec-00_001640.1 vs. uniprot
Match: A0A7S3MFJ3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFJ3_9STRA) HSP 1 Score: 189 bits (480), Expect = 8.180e-51 Identity = 89/180 (49.44%), Postives = 128/180 (71.11%), Query Frame = 1
Query: 271 VYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRAGCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVKDLRVVGGQGLQERKRMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDV---PICVLDVEDFYAGFKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWCVSQL 801
V+GSSS +T Q YLD A +LG LLA+ G+TCVNGAG+ G MGALN +++ G++ GVIH ++ VDA EHP +KDL VVGG L ERK L + +DCI+ LPGG+GT+DELW+ + K +G+ D+ PIC+++V+ FY G Q +RA D +LY ++++ +H E++ A A+ WC Q+
Sbjct: 5 VFGSSSKDTKQAYLDEAFRLGELLAERGYTCVNGAGKFGVMGALNTACSQKNGKIVGVIHSIFCVDAGEHPFIKDLLVVGGIDLYERKLQLFDASDCILVLPGGVGTFDELWDGISSKSLGMKDMSLKPICIVNVDGFYDGSLQQLQRAHEDGILYQEVEEYVHVETNVADALAWCAEQV 184
BLAST of Ec-00_001640.1 vs. uniprot
Match: B8C494_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C494_THAPS) HSP 1 Score: 187 bits (474), Expect = 7.690e-50 Identity = 93/207 (44.93%), Postives = 127/207 (61.35%), Query Frame = 1
Query: 268 CVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRAGCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVK-----------DLRVVGGQGLQERKRMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDVPICVLDVEDFYAGFKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWCVSQLGAPGRDHKPNRRLERTTS 855
C YGSSS TP+ Y + A +LG +LA GHTCVNGAG AGCM A+N G ++ GR+ GVIHEM+IVD S+ + +L V G LQERKR+L++GAD +V LPGG GTWDELWEM C + +G ++PI ++V+ +Y F +RA +D LLY + ++HFE P A++W L P K + ++ TS
Sbjct: 11 CCYGSSSSKTPEKYTNAAYELGIILARRGHTCVNGAGSAGCMAAMNQGASDGNGRIVGVIHEMFIVDGSDWLEGSQHTFANNGGKHELLVAKGDDLQERKRLLVKGADGLVVLPGGPGTWDELWEMACARHVGFHNMPIVCVNVDGYYDTFMSILQRAHSDELLYKEPQDIVHFEETPEAAVKWIEDYLADPRNKEKQQKTIKTRTS 217
BLAST of Ec-00_001640.1 vs. uniprot
Match: A0A6U2D5V3_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2D5V3_HEMAN) HSP 1 Score: 184 bits (468), Expect = 1.010e-49 Identity = 90/177 (50.85%), Postives = 111/177 (62.71%), Query Frame = 1
Query: 268 CVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRAGCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVKDLRVVGGQGLQERKRMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLC-DVPICVLDVEDFYAGFKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWCVS 795
CVYGSSS NTP+ Y+D A KLG LLA+ GH CVNG G+ GCMG N+G + G++ VIHE ++VD E ++ V G L ERKR+LMEG DCI+ALPGG GTWDELWE VC G+G VP+ + V+ +Y F KR Q D L+Y MD L FE D A+ S
Sbjct: 4 CVYGSSSPNTPKAYMDQAYKLGQLLAERGHVCVNGGGKTGCMGGCNEGCRDAKGKIVCVIHETFLVDKEEFQGADEMVVARGDSLAERKRLLMEGCDCIIALPGGAGTWDELWEAVCQVGLGFMRGVPLICVSVDGYYQPFHDMVKRGQQDMLVYKGMDDFLLFEKDAESALNSAES 180
BLAST of Ec-00_001640.1 vs. uniprot
Match: A0A7S2ENU1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ENU1_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.090e-48 Identity = 94/215 (43.72%), Postives = 124/215 (57.67%), Query Frame = 1
Query: 268 CVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRAGCMGALNDGVTERCGRVRGVIHEMWIVDASE-----------------------HPQVKDLRVVGGQGLQERKRMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDVPICVLDVEDFYAGFKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWCVSQLGAPGRDHKPNRRLE 843
CVYGSSS TPQ YL A KLGNLLA HTCVNGAG +GCMGALN G E G++ GVIHEM+IVD S+ + + V GG+ LQERK++L++GAD ++ LPGG GTWDELWEM C + +G ++PI ++ +Y GF+ +R D LLY + ++HFE KA+EW + + K + E
Sbjct: 73 CVYGSSSSKTPQIYLTEATKLGNLLASHKHTCVNGAGASGCMGALNKGCDEGNGKIVGVIHEMFIVDGSDWCTSGAHSVFHTSEMIKGGEEEQSGMKRQILVAGGEDLQERKKLLVKGADALMVLPGGPGTWDELWEMACARNLGFNNIPIVCINTNGYYNGFQQMLQRGHDDSLLYNKPEDIVHFEDSAEKALEWVEQTVARQKKVEKEEKAAE 287
BLAST of Ec-00_001640.1 vs. uniprot
Match: K8Z7U8_NANGC (Lysine decarboxylase-like protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7U8_NANGC) HSP 1 Score: 181 bits (459), Expect = 2.590e-48 Identity = 81/180 (45.00%), Postives = 113/180 (62.78%), Query Frame = 1
Query: 268 CVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRAGCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVKDLRVVGGQGLQERKRMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDVPICVLDVEDFYAGFKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWCVSQLGA 807
CV+ SSS TP+PYL VAR+LG +A + C+NG G+ GCMGALN+G G+++ VIH W++D E V +L + G LQERKR+L E DC++ LPGG GTWDEL E+ C +G +PI +++V+ FY G Q RA D++LYA D +H E+ A+ WC ++ A
Sbjct: 4 CVFASSSSLTPEPYLKVARELGEEIAKAQYLCINGGGKNGCMGALNEGARAGGGKIKTVIHGKWVIDKMEFEDVDELVIAQGNNLQERKRLLWETCDCVIVLPGGTGTWDELMEVACHNSVGFGKIPITLVNVDGFYDGIIQQVARAARDKILYATPDDTMHVETTAQGALSWCAKRVQA 183
BLAST of Ec-00_001640.1 vs. uniprot
Match: A0A7S2UF15_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF15_9STRA) HSP 1 Score: 182 bits (463), Expect = 5.780e-48 Identity = 89/191 (46.60%), Postives = 119/191 (62.30%), Query Frame = 1
Query: 268 CVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRAGCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVKD--------------LRVVGGQGLQERKRMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDVPICVLDVEDFYAGFKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWCVSQ 798
C YGSSS TP+ YL AR+LG L GHTCVNGAG GCM A+N+G + G + GVIHEM++VD S+ D ++V GG LQERKR+L+EGAD +V LPGG GTWDELWEM C++ +GL ++PI +++E +Y F+ +RA D+L+ +++HFE AIEW Q
Sbjct: 21 CCYGSSSSRTPERYLTEARQLGYGLGKRGHTCVNGAGSHGCMAAMNEGADQAGGHIVGVIHEMFVVDGSDWADAADGGGAHSVFRSSKREIQVAGGSDLQERKRLLVEGADALVVLPGGPGTWDELWEMACVRHLGLREIPIVCVNIEGYYDSFQQMLQRAWEDQLIQRKPHEVVHFEPTSKAAIEWIEQQ 211
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 517.7 |
Seed ortholog evalue | 3e-144 |
Seed eggNOG ortholog | 2880.D8LEB8 |
Length | 2434 |
Hectar predicted targeting category | other localisation |
Gene id | Ec-00_001640.1 |
GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009308,GO:0009690,GO:0009691,GO:0009987,GO:0010033,GO:0010243,GO:0010817,GO:0014070,GO:0014074,GO:0034754,GO:0042221,GO:0042445,GO:0042446,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048509,GO:0050789,GO:0050793,GO:0050896,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901698 |
EggNOG free text desc. | cytokinin biosynthetic process |
EggNOG OGs | 2QSR9@2759,COG1611@1 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_001640.1 ID=Ec-00_001640.1|Name=Ec-00_001640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=246bp MPRSRDGKHTFCVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRA GCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVKDLRVVGGQGLQERK RMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDVPICVLDVEDFYAG FKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWCVSQLGAPGRDHKPNR RLERTTSGVNPPTTTSWSNSDRFMWACSVIACSGALTLAMTALRR* back to topspliced messenger RNA >Ec-00_001640.1 ID=Ec-00_001640.1|Name=Ec-00_001640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2434bp|location=Sequence derived from alignment at chr_00:1871750..1880479+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.
TGCTGCACTTCTGCTGTACTGTTGATGTAGATACCATATTTGCAAATTGC TCGCGCCTCCGACCCTCCAGGAGGTCGATGTGTTCGAAATTACTACTGGT ATTTATTGCAAATTGCGGAGCCCCGTCGCGGCAAAGGCAGTGGTGGTTTC CGGGGGCGCCTGCTTGCGCACTCCACACAATCCTCCTTCTCTCCCATCTC CTTTCCTCGCCATCGACTGTCTCAAAGAACTTGTTATGCCCCGATCCAGA GATGGAAAGCACACCTTTTGCGTGTACGGATCGAGCTCAGTGAACACTCC CCAACCTTACTTGGACGTGGCACGCAAGCTGGGCAATCTGCTGGCGGATG GCGGCCACACTTGCGTCAACGGGGCGGGACGGGCGGGTTGCATGGGGGCC CTGAATGACGGGGTGACGGAGAGGTGCGGGAGGGTGCGGGGGGTGATCCA CGAGATGTGGATCGTGGATGCTTCGGAACACCCCCAGGTTAAGGACCTCC GAGTGGTCGGAGGGCAAGGGCTACAGGAGCGGAAACGAATGCTGATGGAG GGTGCCGACTGCATTGTGGCGCTGCCCGGGGGGCTCGGGACGTGGGACGA GTTGTGGGAGATGGTCTGCCTCAAGGGGATCGGTCTGTGCGACGTCCCTA TTTGTGTGTTGGATGTGGAAGACTTCTACGCAGGGTTCAAGGTTCAGACG AAGAGGGCACAAGCAGATCGACTCCTGTACGCAGACATGGACAAGCTCCT CCACTTCGAGAGCGACCCCGCAAAGGCCATCGAGTGGTGTGTCTCTCAAC TGGGAGCCCCGGGACGCGACCACAAGCCGAATCGGCGCCTCGAAAGAACT ACGTCGGGAGTCAACCCACCGACAACAACATCGTGGAGTAACTCGGACAG GTTTATGTGGGCGTGCAGCGTGATTGCATGTTCCGGAGCTTTGACCCTGG CCATGACTGCGCTCAGACGCTGAGCAGAAGGTCATGTTTCTCTATATTGC TGTAGATCTTGGGTGAATTGATGCCTGGAAGGGTGCGCTTCCGTCTCGCG CATAACGGGACGGGCTGGTTAGTGATCATGTGGTGGCAGGGGGTGGTGTT GCTCTCCCGCAGTTAGATAGAGCGTCGAGGCAGGACCACAAAAGCTGGGA GGGCAGATCAGCATCGACCGGATTATTCCGAACCGAACCTGCTCTTCCTG CAAACAGGCACTACACTAGTCTAGGGGGCGCCACAGCCATTTCGGCAATT TTACCATGTCACTCTTGTTGGTACCCCAAGGCGTCAGTCAATGGATGCTC GCTTTCGCGTGGAACGTAGTGCAGTGTATGGTGGACGATGAACGGCAGAG GGAAGACTAATTGCAGCGTCTGAAGACTCGTCCTTGCAGGCTTGGGCCAA CAATCAAGCACAGCATCGAGAATGCGGTCAGGTGTTCATTTTATTAGCTG ATATGCTTTTCGCTGGTGTCACAGCCGGAGACTGCGTGTTCCTTGCGCTT GAACGGATTTGCCATTCCTTGCGGGCTCTACGCTTACGTTTACCCATGTT GATGGCTGAAGAGCTCACCGAAGAGGTTGTCTGCCAGACTGAAAATATGT TTTCGTTCTAGTCATGTCCACCTTGTGCGCTTTTCATCATACTTATGAAT TTACCTTGTTTCAGTTATAGCAGCGTGCAATAGTGACTGGCACATGCTTC AGTATTTGGGCGGGTCACGAGAGCAAATCCGACGGCCGTTTTTTTCGTCC ATCGGGTTTTCCCCCGAAAATCAACGTGGTACTCGTTTGAGTTCAGATCG ATGTATCCTTATCATTGCTGGGGAGGAATTGTATCTGCAGAATGTTTCTT TAGTCGTAACGCGAACGCATGGATAGACACGCACGCAAAGGCAGGGCGTG TATTCTCTGAAGCCATGGCGAAGTTTTCCTAGAGTTGGTGTTTTGCGGCC TGGAGAGAGATGAAATGAATTGTTTCTGTTCCAAAATAGATTTGACGATC ATGCATGGTGTTTTTTTTTGTGGCGCAAGTTGCTGAGGCGGCCGGTCACG TTGATGGTCTGAAGACAAAAATGTGCCCGCAGTTTTCTGATTGGCCAATT TTGCGTACCATGCGTTCCGGACATGTATGTTACCGTTCGTGTGCGCCAAA GTGGGCAGTATTCTGCTGCCTGATTCGCGCTCCCTCTTTTTGAGCAATGG CTATCAACTCTATGCCCATCGCAAGATTGCGAGGTGTTCGTCCCTGGTGC AGTTAGTTTTTTCGGGTTTGATCGCCTCCCGGTTTGTCTTTTGGGACCTG CTTTTGGCGTTTGTTTTGAGGATTTTCTGTGTCCGTTCTTTTGATATCTA AAAGTGTTGGCCGGTGACAACGGAACGCGCCCGGGTCAGTTGAACCAGTG GATATCTTACAGTAATGCTATTTTCGGCACCTGT back to topprotein sequence of Ec-00_001640.1 >Ec-00_001640.1 ID=Ec-00_001640.1|Name=Ec-00_001640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=246bp
MPRSRDGKHTFCVYGSSSVNTPQPYLDVARKLGNLLADGGHTCVNGAGRA GCMGALNDGVTERCGRVRGVIHEMWIVDASEHPQVKDLRVVGGQGLQERK RMLMEGADCIVALPGGLGTWDELWEMVCLKGIGLCDVPICVLDVEDFYAG FKVQTKRAQADRLLYADMDKLLHFESDPAKAIEWCVSQLGAPGRDHKPNR RLERTTSGVNPPTTTSWSNSDRFMWACSVIACSGALTLAMTALRR* back to topmRNA from alignment at chr_00:1871750..1880479+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Ec-00_001640.1 ID=Ec-00_001640.1|Name=Ec-00_001640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=8730bp|location=Sequence derived from alignment at chr_00:1871750..1880479+ (Ectocarpus species7 Ec32 male_plus_femaleSDR) TGCTGCACTTCTGCTGTACTGTTGATGTAGATACCATATTTGCAAATTGC
TCGCGCCTCCGACCCTCCAGGAGGTCGATGTGTTCGAAATTACTACTGGT
ATTTATTGCAAATTGCGGAGCCCCGTCGCGGCAAAGGCAGTGGTGGTTTC
CGGGGGCGCCTGCTTGCGCACTCCACACAATCCTCCTTCTCTCCCATCTC
CTTTCCTCGCCATCGACTGTCTCAAAGAACTTGTTATGCCCCGATCCAGA
GATGGAAAGCACACCTTTTGCGTGTACGGATCGAGCTCAGGTGAGCAGCC
GTATGCCCCAAGTGGCAGTGCGTTGTAGGCATTTCTGTCTCTCAGTTGCT
CCTTTGTTATACCGTATATGACACAAGATAACACACCCCCTGGACCGATT
TTCATAGCTCGATTACTCCACGACGAAGAGGATGCATAAACGAAACAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
GCTGTTTATCATTGTTTTTGTACTTTTTTCTCTGCGGTCTTGATTTCTCC
TTTCTTTCCCCCCCCCCGGCTTTTCCTATTCTACTCTCCGCCCCTCTCTC
GAGCCCTGACAGCGCAGCATTGCTTTCCTAACCCTTGCTTGTCGGAGTTT
CCGATTTGTCTCGAAGAGTCGCCGCGCTGCTCTCTGTCTTCCTGTCTCCG
TCTCTTTCTGCCCCTATCGCCTATTCATCGATGGACGTGGGCAGACCCTC
TTCCCAAGTTGGTCGGTTGCTGTTTGCTGGCAGGAAGGATCGATCGCAAG
ACTCCCTCTGAGTAATACCGTATATGACACAAGATAACACCCCCCCTGGA
CCGATTTTCAAAGCTCGATTACTCCACGACGAAGAGGATGCATAAACGAA
ACAATACATTTTCGAAAACCTCTCGACGAAACGGTTCCAACGCCGCCGTT
TTCGGCGCTGTGACTCTTCCTGCTGTTGAGAAATCGAGCTTTGAAAATCG
GCCCAGGGGGTGTGTTATCTTGTGTCATATACGGTACTATTCCGCTGCTG
TACGGTCTGCTGCAGCAGTGCCTGCTGTTCATGTAGCTGACCAGCTCGTC
GCGCGCGCGCAGGAAACAGCCAGCATGGTCAGGTTGCTCCTAGTTTGGCG
AGTACCTAGGGTAGCCTGCCTGCCGCTGCTAGCGCCCTCGTCCACAGCTC
TCATAACGACCACACACCCCATGCGGGTGACGTGTCTCTCTCTTCTTTTT
TTTTACACCGGTCTATTCACGTGCTTCTCTCTCTCTCCCTCTCTCTCTCT
CTCTGCTGCCCCGTCATGCACCAGTGAACACTCCCCAACCTTACTTGGAC
GTGGCACGCAAGCTGGGCAATCTGCTGGCGGATGGCGGCCACACTTGCGT
CAACGGGGCGGGACGGGTGCGTTTTTTGCGTCGTTTTCAACGACGAGCGG
GGGCGTACGTAGGCATGGACTACGTACGACCAATTGCATACGACGTGGGT
ATCCACACGTGGTCGTTGCATCTCTACAGCGGCCATGGAATGCAGCAAGA
ACTCGAATGGGCACATGTTGTCCTTCTGTGCTGTGTACTTGTATTCATTT
TTCCTAAGAACGAGCGGTATTCGGTTACTGGCATGCGTGGCTCAATCTCC
GCTTTGGAGACCTATCATACCCCCTTCACAGACCCTACTCGAGTATTGGT
TGATTGTATCTACAGCAGTAGTCTACAACAGTTCCCAACTACAGCCGTCG
CGTATGATATGCACAGGCAGCAGTAGCATCGATGATTTAATCGCTACTGT
TCTGCAGGGAAAAGAGAGTGGTGAAAGACGAGAAGAATACGTGCGCAGTA
TCGTATGCATGTCACACAGGTAAACATCTATTTTGTTCACATGTATCACT
CGATGGCCGTACACTGTGGCAGCAATACACAGCTGGGCGCGATCGCTGTA
CTGACTGTTGATACGGAACCCCAGCACTTGAAAAGTGGTACATACCGTTG
TGGGGAGATTCTCATGCCCAACTGTGGTGCTTTGTACTTACTCTTATTCA
TCTGTGTTCTTGCGTTTGGACTTGGACCCTCCGTTTTTTAAATTGTGGCT
GGCGTGTTGCGCAATTTTTACAAAACAAAAAATCACAACAAATAAAGGTG
GGCGCCTCGAGGACGTGTGCACTACGAATCTATAACAAGGAGTATTGCAG
TACGTCTCCATCTGCCCAATCGAGGGCCCGTCACCAATACCATCAGCCTT
CAACGCATTAGGACCTTGCAAGAAGGCCTCGAGCTGTTCCTGCTTTGCTC
TGCGATGTTCGTACGGTTTATTATTAGCATCGACCGCGCTACCCGACTGA
CCAATGAAAAGACGTCAGTCTTAGTGCGGTTGAAAACACAAAACACTTTT
ATGTGCCATGAACTGGGACCCCGTGAGGGGGCAGCATGGGGTGCGTGTGT
GATGTGTGATGAACACCATGGGTGCTGCTAAACCTGTGGTTGTTTGTGTT
GGTTCGGTGTGATGGGTGAACAAGTGGTGATATCTCTTACCCTCATCAAC
ATGACTGCCATTAGTCAAGAAGCGTACGTTTCGAGAATGACTGATTCAAA
AGCACGCGACAATCTAACGCCACCGCTGTTTGCAACGCACCTGTTTCTTG
CTTGAATTGTTCGCAGCAGCGGTATTCCGAATTAGTCAAATCTCAACACG
TCATGGTTGTTTATCACGCCCCCCACCGCCGTCGCCTTTCGGCGTTACCC
CCCCCCGATATCCTTCTATGTCATTCCACTATCGCGACATGGGGTTGCAT
TCCCGCCTGCGCTGCTGTCACAGTGCGATGCAAAACTTCTGTTGGCCAGA
GCCCTGCCGTGTCCCGGGTTGTTTTCGTTGTGGCCAACATTGCGTGTAGC
ATACCAGTACCATTTATTCTCTTGGCGTGTTCCGCCACGGGTTATTCCGC
GATGTACGTTCAGATGTCAACAATTGATATTCATACAATACGTGCCAATA
AATCGCACAAGGTCGTTGTCTAAGGTTGCGCTACTGCGATATCGTTTGTT
CTATTCTATTGACAGGCGGGTTGCATGGGGGCCCTGAATGACGGGGTGAC
GGAGAGGTGCGGGAGGGTGCGGGGGGTGATCCACGAGATGTGGATCGTGG
ATGCTTCGGAACACCCCCAGGTTAAGGACCTCCGAGTGGTCGGAGGGCAA
GGGCTACAGGTGGGGGGGGCAGAGAAAGAAGGGCGAATGCCGACTGGGTA
CTCGCGTGTTTTGGCCAGGCGAGTGGGGGGGGGAGGGCGTACTCTTATGT
TTTGCATGCCTTGACGGTTAGACCATTTACCGCGCGTCCTCGCGAGGACG
GAGCATTGTCCCCACAGGACCGAGGGAGGGAGGGCTGTTGTTCATGGTGG
GCGTGGTGCCTGTTTTTTTTCTTCGAGCGATTGTGTTGTGTGGAAAATCG
CCCCCTTTGTTTCCATCAAAGCTAGTACCGGCACCTAGTTAAGCGGTTTG
TGCAGGTTGCGGGGTGTTCTTGAGACTGACGCGGCGAGAAATTATGAGCT
GGTGGGGACAACAACGGTGTTAGTACTGATGGTGGTGGAAATTTTGTGCG
TGCTTTCGTTTGCTAGAAGAGACGGGAAGGGGAGCTACAAGTTTGTGATT
CACAAACTATCTACTTTGAGAGGCAATAGCTATGGTATTTCCACTCTCGT
AATAGGCGTCCGATTCTCTTAGATATTTAGACAACAAGCTAGAGGGAGAA
AGACCCTTGTACAGCATTGGGCGGCGATGACCAGGCAAACGATTTTTTTG
AACCCCACCCCCTGCCGTTGCCCCAATCCTAGCTCCAAAACGAGTCTCTC
CTGCATTTTTTTCTCCCTGTCTGTCGTCGACCCCCTTTGTACGCCAACGC
CTTCGTCGATCCTTGGGAGATCCAACACAGCAGGCCTGCCGATGAGTGTG
CACGTGTTTCGTGGTGTCCCTGCACCCTGCCAGTCGCGTTGGGTGGTCCC
GCGAGACTGAGAAAACACTTTTTCGAGTAGCTTAGGACGTGTTCCACAGC
AGTGTTTGACGCCTTGTTGGCGGAACGTGGAGGGTTAACCGCACAAGCTA
CCGGTACTACCGGTACTGAGGCTGTAGCTCCTCATCCTACGCGTGCCTAC
CGTGGTGTTCGTCCCGACGAAAGCTTTCGACACGCACAAGTTGAGCAGTT
GGCAACAACACAACTCCTCCTTCTTGCGTATCCTCTACCCCCTCGCCTTG
GGCAGGAGCGGAAACGAATGCTGATGGAGGGTGCCGACTGCATTGTGGCG
CTGCCCGGGGGGCTCGGGACGTGGGACGAGTTGTGGGAGATGGTCTGCCT
CAAGGGGATCGGTGAGGGGCGGGGATTGCGCGTTACAAGAGCAAAATCTT
ACTGTCCGGCTAATTTCTTTTTTGCGTGGGCACGCGTATTGCAGGCCTTG
CCCCCGGGCAGTCCACCCCGCCTGCCAAACCAAGAATGGAGATATTTTAA
CCGTGCATCGCAAGTTGTTACTTCAGCAAGATTGCCCGAAATGGGCGGTC
AACGATGGCACGAGAAGAATCATGCTCACCGGCGTCGTGGAAGAGAAGTC
AAGGAAGCTTGCGGTGACGAAACACGCGCTGGCGCGGCATGCACTCACGC
CCGTATTGACCCGAAATGCGACCGTACCCAATCTCCGACGACAGAGTTTC
TACAAGGCGGCACAGACGTCTGAAGTTGGTGTTACTGCGCGCTCGCAAAC
ATGTCTTTGTTGAGTCCAAGTGACTTCGAGCCCGGCCTTTCCTTTTCCCC
CCATTTTTGTGTTCTACATGGCCTTCGTCGTTGCTCCCTCACCGATGTCA
TTTCGGCCAGGTCTGTGCGACGTCCCTATTTGTGTGTTGGATGTGGAAGA
CTTCTACGCAGGTATGAACAGAACCGTCCCATCGCTGCCGCTGCTACTGC
TGTGCTTGGTTGCTCGTTCTGGATCGTCGACAACTTGTCACAGTCTACCC
GTTCTGCATCATCACGTCAACGGCGTCGAGTTTTCCGCCCCCTTCCAGCA
TGTCTGAACTGAGAAGTTGAATCCTGGAAAACATACTCAGGTTTGAGTTT
GTTAGACCCAGAACAGTCAAGCAATGCTCGTTCGGGGTCACTGTGCCATG
CCCTCAACACTACAGCTCTTACTCTTCCTCCCCCCTCCGTCACATACACA
CACACACGGCAAACACGCCTCTCTCTCTTTTTGTCCCTCCTTTTCCCTAT
TCCCTCACCGCTTTTTGTTGGGTGGTGCAGGGTTCAAGGTTCAGACGAAG
AGGGCACAAGCAGATCGACTCCTGTACGCAGACATGGACAAGCTCCTCCA
CTTCGAGAGCGACCCCGCAAAGGCGAGACAGAAAACGCTCTACATGTCAC
CACCACCTGGTGCAAGGAGGGGGGCATCGGGGCGCTCTAAGTGCACGCGC
ACGCGCACGCGCACACACAATTTATTCGTGTCGATCTCGTCGGGAAGTCG
GACAATAGTAGCGTACAACGTTCCCCGTGCTGCTCTGGTTTTGACGGATT
GCGTGCATGTTTACGTTCATTTTTTGGCCCCGCCAATGGTATGTCATTTT
TGGTATTTTATTAATATTCTACCGTATGTATTGATGGCTTGTTTCTTGCC
GTCCAGCCCTCAAAACCGGCCGGTGTGACCAAAGCAGTTTGGTTTCGCCT
TTGGCTGAGTTCACTAGTCTTTCCTCCCCACGCGTGCATGGTGTATGACG
TCACGACTCTTTCCCGTGCTCGACGTTCTGCTAACAGGCCATCGAGTGGT
GTGTCTCTCAACTGGGAGCCCCGGGACGCGACCACAAGCCGGTGAGAAAC
GAGGGGCTTCTTGCCGCCGCCCTTGGCTTGTCCGTTGGCTCTGGGTAGTT
GGGCCACCCCTCTGCCGCACCAAGCTGTGTGTGCAGCAATAGGGCATGCT
GTTTCGCCGCATGAGATTAGTGCTAGTGCTGCTTTGCTGCCGAAGGTCGT
CGGTGGATTCGGCAGTGGCACGGCGCCCTAAACGTGCAGGGGGTTAAGAA
AACGACTCTGCAGTTCAAGAGGCGAAACAAAACGTCGTTCGGCTTTAAGA
TATGTCGGTGTTTTCGGCCGGCGTCGCTGAACCTTGTGAACACCCCCCCC
TTGAGTCCAGATTATTCTCCAAGTGTATCAAACACGAAGCGACGTGTTCG
CTGTGTATGATGCGCCTGTTTGGGCAAGCGTGCAAGATATTCGTTCCTTG
CGGTACTTTACAGTAGTCGTGCCTGCCAAATGTTAATCGTTTTGGTTAGC
CGGGATGCCCAGTCAACCCCTGGCATATCTGGATTGCGAAGGGATTGCTG
TAACCATCTCGCTATAAAAATATCTCAGGCAGGAACCGCAGGAGGGGGTC
CAACCCCCCCCTCCTATGTGACCCCGGTTGGGTCGTCTAGCTAGTAGAAG
TGGAGGATAGGGGCCACAGAGGGGCAGACGACAGAATCCAATGATGGGAG
AAAATATATATATATATATCTGGATTGCACAAACGCAAGGATGATGGCCA
GCTTCTGGTGCATCCTTGTGAAACGTGACCAAGGCCGGCGAAAACCCGGC
ACATCGCCCCGACCCGGCATTGTAGAGATGCGAGATCAACGATGAACGAC
TGTGGCAATTGTTTACATTATTTTGTACATCCCCCCCTCGCCCACTTGCT
TCCCCGTATTGCATGGGTATTCAGTGCTGCAATGTATATCTTGTATGGTA
TGCCATTGAGCGGGCACGAGAGAGATTGTGAAGGGCGTGGCATCGTCTGG
CAGGCTAGAGGCAGTCTGGTCTCTAGTTGTATGTTCGATCGAAAAATGCT
ACTGCAGTGGGCCATGTGTTCTTGAAACTTACTGTCGTAACCAAACCTGT
CCGGGATGCGGCATGTTCTATCCGTTTCCTTCCAAGCTTGTGCCTGCTTC
CTTGAATCCATTGCACCGCGACCGTGTGCGCAGCAGCATTGGCCGTCACC
CCTCAAGCCGCCCTTCCCTCTCTCCCTCCCTCCCTCCCTCCCCCTCCCCC
TTCTTCCCCTCCTCCCTCCTCCCAGAATCGGCGCCTCGAAAGAACTACGT
CGGGAGTCAACCCACCGACAACAACATCGTGGAGTAACTCGGACAGGTTT
ATGTGGGCGTGCAGCGTGATTGCATGTTCCGGAGCTTTGACCCTGGCCAT
GACTGCGCTCAGACGCTGAGCAGAAGGTCATGTTTCTCTATATTGCTGTA
GATCTTGGGTGAATTGATGCCTGGAAGGGTGCGCTTCCGTCTCGCGCATA
ACGGGACGGGCTGGTTAGTGATCATGTGGTGGCAGGGGGTGGTGTTGCTC
TCCCGCAGTTAGATAGAGCGTCGAGGCAGGACCACAAAAGCTGGGAGGGC
AGATCAGCATCGACCGGATTATTCCGAACCGAACCTGCTCTTCCTGCAAA
CAGGCACTACACTAGTCTAGGGGGCGCCACAGCCATTTCGGCAATTTTAC
CATGTCACTCTTGTTGGTACCCCAAGGCGTCAGTCAATGGATGCTCGCTT
TCGCGTGGAACGTAGTGCAGTGTATGGTGGACGATGAACGGCAGAGGGAA
GACTAATTGCAGCGTCTGAAGACTCGTCCTTGCAGGCTTGGGCCAACAAT
CAAGCACAGCATCGAGAATGCGGTCAGGTGTTCATTTTATTAGCTGATAT
GCTTTTCGCTGGTGTCACAGCCGGAGACTGCGTGTTCCTTGCGCTTGAAC
GGATTTGCCATTCCTTGCGGGCTCTACGCTTACGTTTACCCATGTTGATG
GCTGAAGAGCTCACCGAAGAGGTTGTCTGCCAGACTGAAAATATGTTTTC
GTTCTAGTCATGTCCACCTTGTGCGCTTTTCATCATACTTATGAATTTAC
CTTGTTTCAGTTATAGCAGCGTGCAATAGTGACTGGCACATGCTTCAGTA
TTTGGGCGGGTCACGAGAGCAAATCCGACGGCCGTTTTTTTCGTCCATCG
GGTTTTCCCCCGAAAATCAACGTGGTACTCGTTTGAGTTCAGATCGATGT
ATCCTTATCATTGCTGGGGAGGAATTGTATCTGCAGAATGTTTCTTTAGT
CGTAACGCGAACGCATGGATAGACACGCACGCAAAGGCAGGGCGTGTATT
CTCTGAAGCCATGGCGAAGTTTTCCTAGAGTTGGTGTTTTGCGGCCTGGA
GAGAGATGAAATGAATTGTTTCTGTTCCAAAATAGATTTGACGATCATGC
ATGGTGTTTTTTTTTGTGGCGCAAGTTGCTGAGGCGGCCGGTCACGTTGA
TGGTCTGAAGACAAAAATGTGCCCGCAGTTTTCTGATTGGCCAATTTTGC
GTACCATGCGTTCCGGACATGTATGTTACCGTTCGTGTGCGCCAAAGTGG
GCAGTATTCTGCTGCCTGATTCGCGCTCCCTCTTTTTGAGCAATGGCTAT
CAACTCTATGCCCATCGCAAGATTGCGAGGTGTTCGTCCCTGGTGCAGTT
AGTTTTTTCGGGTTTGATCGCCTCCCGGTTTGTCTTTTGGGACCTGCTTT
TGGCGTTTGTTTTGAGGATTTTCTGTGTCCGTTCTTTTGATATCTAAAAG
TGTTGGCCGGTGACAACGGAACGCGCCCGGGTCAGTTGAACCAGTGGATA
TCTTACAGTAATGCTATTTTCGGCACCTGT back to topCoding sequence (CDS) from alignment at chr_00:1871750..1880479+ >Ec-00_001640.1 ID=Ec-00_001640.1|Name=Ec-00_001640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=738bp|location=Sequence derived from alignment at chr_00:1871750..1880479+ (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGCCCCGATCCAGAGATGGAAAGCACACCTTTTGCGTGTACGGATCGAG CTCAGTGAACACTCCCCAACCTTACTTGGACGTGGCACGCAAGCTGGGCA ATCTGCTGGCGGATGGCGGCCACACTTGCGTCAACGGGGCGGGACGGGCG GGTTGCATGGGGGCCCTGAATGACGGGGTGACGGAGAGGTGCGGGAGGGT GCGGGGGGTGATCCACGAGATGTGGATCGTGGATGCTTCGGAACACCCCC AGGTTAAGGACCTCCGAGTGGTCGGAGGGCAAGGGCTACAGGAGCGGAAA CGAATGCTGATGGAGGGTGCCGACTGCATTGTGGCGCTGCCCGGGGGGCT CGGGACGTGGGACGAGTTGTGGGAGATGGTCTGCCTCAAGGGGATCGGTC TGTGCGACGTCCCTATTTGTGTGTTGGATGTGGAAGACTTCTACGCAGGG TTCAAGGTTCAGACGAAGAGGGCACAAGCAGATCGACTCCTGTACGCAGA CATGGACAAGCTCCTCCACTTCGAGAGCGACCCCGCAAAGGCCATCGAGT GGTGTGTCTCTCAACTGGGAGCCCCGGGACGCGACCACAAGCCGAATCGG CGCCTCGAAAGAACTACGTCGGGAGTCAACCCACCGACAACAACATCGTG GAGTAACTCGGACAGGTTTATGTGGGCGTGCAGCGTGATTGCATGTTCCG GAGCTTTGACCCTGGCCATGACTGCGCTCAGACGCTGA back to top
Synonyms
The feature 'Ec-00_001640.1' has the following synonyms
Synonym |
Esi0013_0133 |
Esi_0013_0133 |
|