Ec-00_001560.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_001560.1
Unique Name	Ec-00_001560.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	376

Homology

The following BLAST results are available for this feature:

BLAST of Ec-00_001560.1 vs. uniprot

BLAST of Ec-00_001560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:1786292..1789782 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	2408
Hectar predicted targeting category	signal peptide
Gene id	Ec-00_001560.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_001560	Ec-00_001560	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 1786292..1789782 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001560.1	Ec-00_001560.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 1786404..1788614 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001560.1.1	Ec-00_001560.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1786292..1786528 +
Ec-00_001560.1.2	Ec-00_001560.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1787182..1787308 +
Ec-00_001560.1.3	Ec-00_001560.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1787739..1789782 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001560	5UTR:Ec-00_001560.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 1786292..1786403 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001560.1	CDS:Ec-00_001560.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 1786404..1786528 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001560	3UTR:Ec-00_001560.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 1788615..1789782 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:1786292..1789782+
coding sequence from alignment at chr_00:1786292..1789782+

mRNA sequence

>Ec-00_001560.1 ID=Ec-00_001560.1|Name=Ec-00_001560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=376bp
MQQKRCATRRIALPLAILLVLTVFLIWLEFAEGGRKQQAISRRRTKKSRA
GVGKDFSEFLLVIGAIMTCVIAPVFFFFLHSIYKDPATPELARACWNAVK
SKLLSYLGQSPAVPGSVVGTNNTLASLSTPTAARRRTLYANDSTNYVDMR
RDENGNKTSGASSASRRATTANTQLYSAGDAITERSYLAVPRPSSRDQSR
PRRYLDDDQREEPPYYGYAAADRRYRRKGEDLQRHPAPGYTAPYSSGAIL
PEQSGGGLKLEEDGFSAARGAQPTRWREYGGNGRDHTLPAKDVRFLGENE
ARSSEPRRRVEWDPYPDDDDDDVGKGLQGNPTVDDHMGRGVYKSTQSKRT
VARSKRARATRISLAGKTNGGRQSL*

spliced messenger RNA

>Ec-00_001560.1 ID=Ec-00_001560.1|Name=Ec-00_001560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2408bp|location=Sequence derived from alignment at chr_00:1786292..1789782+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GTTTGAGGTGTGGGCTGTGTTGGCCCTTTTTGTGCGCGAGATAATCCGAG
TAGTACTGGCGAGTGGATCAAGATTTGCCGTAACTGATTGACGAAATAAG
GAACAGCTGGGCATGCAGCAGAAGAGATGCGCGACCAGGCGCATAGCGCT
ACCGCTCGCGATCCTGCTCGTCCTAACTGTTTTCTTGATCTGGCTAGAGT
TCGCAGAGGGAGGGCGGAAGCAGCAGGCGATTTCAAGGCGACGGACCAAG
AAGTCCCGAGCAGGTGTAGGGAAGGACTTCTCAGAGTTCCTGCTGGTGAT
CGGAGCTATTATGACTTGTGTGATCGCGCCAGTCTTTTTTTTTTTCCTCC
ACTCCATTTACAAGGATCCAGCGACTCCTGAGCTGGCGCGGGCATGCTGG
AATGCCGTCAAGAGCAAGCTGCTATCCTACCTAGGACAGTCACCTGCGGT
GCCCGGCTCCGTCGTTGGTACAAACAACACGTTAGCCTCTTTGTCAACCC
CTACAGCAGCCCGACGTCGTACCCTCTACGCGAATGACAGCACCAACTAC
GTCGACATGCGCAGGGACGAAAACGGCAACAAGACCTCTGGAGCTTCCTC
GGCTTCGCGCCGAGCCACAACAGCTAACACGCAACTGTACTCCGCTGGAG
ACGCCATCACCGAACGATCTTATCTTGCTGTACCTAGGCCGAGTAGCCGA
GACCAATCCCGGCCCCGCCGATACCTTGATGATGACCAAAGGGAAGAACC
ACCGTACTACGGCTACGCCGCCGCCGACAGGCGCTACCGCCGAAAAGGTG
AAGATTTGCAAAGGCACCCAGCACCAGGGTACACGGCACCCTACTCTTCA
GGAGCAATTCTTCCCGAACAAAGCGGAGGGGGGCTCAAGCTGGAAGAGGA
CGGATTTTCGGCGGCAAGGGGGGCACAGCCTACAAGGTGGCGGGAATACG
GCGGCAACGGCCGTGACCATACCCTTCCCGCAAAAGACGTCAGGTTTCTC
GGTGAGAACGAAGCCCGCAGCTCCGAACCGCGCCGGAGAGTGGAGTGGGA
TCCATACCCAGATGATGATGACGATGATGTTGGCAAGGGGTTGCAGGGCA
ACCCAACGGTTGACGATCATATGGGTCGTGGCGTGTACAAAAGCACACAG
AGCAAACGGACGGTGGCAAGAAGCAAGCGGGCGAGGGCCACGAGAATCTC
ATTGGCTGGAAAGACGAACGGTGGGAGACAGTCTTTGTGAATCAATTACC
TGATGGCATGATGAAACCGCAACGTTACCCATGGAAGAGGGCGCTGGGAG
AGGGAAAGGAGGGGGGGGGGGGGGGAGTCGTTTCGGCCAAGCCACACAGG
CAAGGCGCTGTCTCGCTACCGTAAGGTAGGCACTCGGAGAATCGCGTCCG
GACGTCGTGCTCTCTCGAGGCGATGTCGACACACAACGACAACACGGCCA
CGCCCAACGGCAACCACGACCGCAACAGAGATGTTCAATGTAGAAGGGTC
GAGTCGGCTGTTCATTGGGGTAAGGTTGGAAAAGTGGTGCGGCGATGGAC
GGGGATGAAGCATATACGAAACGAGTCCGAAAGCGATGGGAAGAGACCAA
TATTGATCTTTTCTGTCGTTGGCATTGAAACCAAAGGTTGTTGGCTCAAG
AAAATAGCGCTGGGAGCTACCCTGCACAAGTCCGAGAATCCAACAACAGC
AAGCGACTGAGTGGGTGGGATGTCGGTCGAATCCAACAAGCGCGCAGCGG
CTTGCGGCTCGGTGTAAGGGATTTCGGGGTACGCAAAGGGCTCATTGTAC
CAGGAAATGTTTGAGGCTTCACCCTCAGAAGCATATACTGTAGCTAGTAC
ATTCACCCAGGCCGAAGTTTTACCCTCAGAAGCATCCACTTACATTCACC
TAGGCAGTGTTCAATGGATTGCCCTGTCGTGCCAACCATTGATTGAACCT
GAAAGAAAATTTGCGGTGGTTTTTCGAGAGAGTGTCTCCTCAAAAACCTT
GGCGAGGAGTGGCCAGGCTGAAAGAAAAGAGGGGGGAGAGTCAACGTACG
ACCGAGACCAAACGTCACGGAATATCGGGCGATGATGTACCCATGGGACT
AGCTTGCATGTTTCGGAGAGACGATTTCCTCGACCTGAGACAGAAAGTAC
TGTCTCGAAGCATCCTTGTCGAGAAGTGAGAAGCTGTGGGTGGACGGAAT
TCTTAGGGGTGGGCGACAGAGAGGGCAAGTGGTACCATCAAGAGAGTCGA
TTGGAAAGGATACACACACATCCATCTGTTCTTAACAATCGGCGCGGGAC
ACCACAAAACTTGTCACGTTTCAAAGCCGTCGGTGGTGACTTTTCGAATC
CAGGTGTACCACCTCCGTGATTTAGCACGCTCGTGCACACTTCAATCCCA
AATCCGTG

protein sequence of Ec-00_001560.1

>Ec-00_001560.1 ID=Ec-00_001560.1|Name=Ec-00_001560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=376bp
MQQKRCATRRIALPLAILLVLTVFLIWLEFAEGGRKQQAISRRRTKKSRA
GVGKDFSEFLLVIGAIMTCVIAPVFFFFLHSIYKDPATPELARACWNAVK
SKLLSYLGQSPAVPGSVVGTNNTLASLSTPTAARRRTLYANDSTNYVDMR
RDENGNKTSGASSASRRATTANTQLYSAGDAITERSYLAVPRPSSRDQSR
PRRYLDDDQREEPPYYGYAAADRRYRRKGEDLQRHPAPGYTAPYSSGAIL
PEQSGGGLKLEEDGFSAARGAQPTRWREYGGNGRDHTLPAKDVRFLGENE
ARSSEPRRRVEWDPYPDDDDDDVGKGLQGNPTVDDHMGRGVYKSTQSKRT
VARSKRARATRISLAGKTNGGRQSL*

mRNA from alignment at chr_00:1786292..1789782+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_001560.1 ID=Ec-00_001560.1|Name=Ec-00_001560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3491bp|location=Sequence derived from alignment at chr_00:1786292..1789782+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GTTTGAGGTGTGGGCTGTGTTGGCCCTTTTTGTGCGCGAGATAATCCGAG
TAGTACTGGCGAGTGGATCAAGATTTGCCGTAACTGATTGACGAAATAAG
GAACAGCTGGGCATGCAGCAGAAGAGATGCGCGACCAGGCGCATAGCGCT
ACCGCTCGCGATCCTGCTCGTCCTAACTGTTTTCTTGATCTGGCTAGAGT
TCGCAGAGGGAGGGCGGAAGCAGCAGGCGATTTCAAGGTAAACGTGCCGT
CGCGTGCTGATGTAGGCCCGTTGGGTCCACCCGTGACGCCAGATCGTCTT
GAGTTTCGAGTCGAAGTGGTTCGTCGTAAAGCTTCGAGGGCCTTTGCCCA
CTGTATGCAGAATACATACTGCTGTAGATATAGTCTAGGCCAGTCGGGCA
CGGTTACGTCATTTTGAAGGTTGCAATCGAATAACAAAGTGCCCGAAGCA
CATTCGGCCAGACCACGAGGAAGGATGATCTTTTTCACGCCATTCTGGTG
TTTGTGTGAAATACATGACGACTTCGCAACTGTACTGGCCCAACGTAAGG
TACAAGGAAAGAAAGTGGTTGAGCTTCAAAAGGACGGAACACGGCAGGTT
GAATCAGGTCCGGCGAACCCCTTTTTTTATTATGCTTGGTCGTCAGTCCG
ACGAAGATAGACAGAGTATAGTTCTAGGGTCATTGACACAGCAGTCAATG
TTTCAAACGGCATTTCTCCACAACGACCATTCCCTTGCTACAACACCACC
TTCTTGCCTCCCCAACACCGAGTACAACAAAATCATCGATATAGTCTAGA
GGCTGTTGGGAAGGATTTACACGATACTGAGTACGCATGATATTCATATC
GCCGTCCTTGTCGTTGTCGGCTGCGTATGTATATATGCAGGCGACGGACC
AAGAAGTCCCGAGCAGGTGTAGGGAAGGACTTCTCAGAGTTCCTGCTGGT
GATCGGAGCTATTATGACTTGTGTGATCGCGCCAGTCTTTTTTTTTTTCC
TCCACTCCATTTACAAGGTACGTTCCTTACCAGCCGTCGACCTGTAGATC
GCATGCCCTACACGGGCGACGCGGGTATCCCCTACAGTCGATCGAATCAG
CATCGGATTGATGTCGACGGCCGGCCAGCGCACGTCCAAACAACGTTTCC
CCAAATCGATACCGCACCGCTTCTTACATATATCATGTAGGGCAAAGTCT
ATCGATCGTTTAGAAATGAGAGTACTGAACAGCCTCAACAAGGCGCCACC
ACCAGCGACACAGTTGATGACGACCACAGGGCACAGGCCGAGTAGTTCGA
TCGGACTATTGTACGCAGCGCCCGGCGCGCATAACTTCCAGAAATAGTAC
CCAGCAGGTTGCGCATGAGGCATGCTACATAATCCTCTCTAACGTACCGC
TACGATTTCGTGTGCGTCTTTCGGACCGAACTGCTTCCCCCACAAAGGAT
CCAGCGACTCCTGAGCTGGCGCGGGCATGCTGGAATGCCGTCAAGAGCAA
GCTGCTATCCTACCTAGGACAGTCACCTGCGGTGCCCGGCTCCGTCGTTG
GTACAAACAACACGTTAGCCTCTTTGTCAACCCCTACAGCAGCCCGACGT
CGTACCCTCTACGCGAATGACAGCACCAACTACGTCGACATGCGCAGGGA
CGAAAACGGCAACAAGACCTCTGGAGCTTCCTCGGCTTCGCGCCGAGCCA
CAACAGCTAACACGCAACTGTACTCCGCTGGAGACGCCATCACCGAACGA
TCTTATCTTGCTGTACCTAGGCCGAGTAGCCGAGACCAATCCCGGCCCCG
CCGATACCTTGATGATGACCAAAGGGAAGAACCACCGTACTACGGCTACG
CCGCCGCCGACAGGCGCTACCGCCGAAAAGGTGAAGATTTGCAAAGGCAC
CCAGCACCAGGGTACACGGCACCCTACTCTTCAGGAGCAATTCTTCCCGA
ACAAAGCGGAGGGGGGCTCAAGCTGGAAGAGGACGGATTTTCGGCGGCAA
GGGGGGCACAGCCTACAAGGTGGCGGGAATACGGCGGCAACGGCCGTGAC
CATACCCTTCCCGCAAAAGACGTCAGGTTTCTCGGTGAGAACGAAGCCCG
CAGCTCCGAACCGCGCCGGAGAGTGGAGTGGGATCCATACCCAGATGATG
ATGACGATGATGTTGGCAAGGGGTTGCAGGGCAACCCAACGGTTGACGAT
CATATGGGTCGTGGCGTGTACAAAAGCACACAGAGCAAACGGACGGTGGC
AAGAAGCAAGCGGGCGAGGGCCACGAGAATCTCATTGGCTGGAAAGACGA
ACGGTGGGAGACAGTCTTTGTGAATCAATTACCTGATGGCATGATGAAAC
CGCAACGTTACCCATGGAAGAGGGCGCTGGGAGAGGGAAAGGAGGGGGGG
GGGGGGGGAGTCGTTTCGGCCAAGCCACACAGGCAAGGCGCTGTCTCGCT
ACCGTAAGGTAGGCACTCGGAGAATCGCGTCCGGACGTCGTGCTCTCTCG
AGGCGATGTCGACACACAACGACAACACGGCCACGCCCAACGGCAACCAC
GACCGCAACAGAGATGTTCAATGTAGAAGGGTCGAGTCGGCTGTTCATTG
GGGTAAGGTTGGAAAAGTGGTGCGGCGATGGACGGGGATGAAGCATATAC
GAAACGAGTCCGAAAGCGATGGGAAGAGACCAATATTGATCTTTTCTGTC
GTTGGCATTGAAACCAAAGGTTGTTGGCTCAAGAAAATAGCGCTGGGAGC
TACCCTGCACAAGTCCGAGAATCCAACAACAGCAAGCGACTGAGTGGGTG
GGATGTCGGTCGAATCCAACAAGCGCGCAGCGGCTTGCGGCTCGGTGTAA
GGGATTTCGGGGTACGCAAAGGGCTCATTGTACCAGGAAATGTTTGAGGC
TTCACCCTCAGAAGCATATACTGTAGCTAGTACATTCACCCAGGCCGAAG
TTTTACCCTCAGAAGCATCCACTTACATTCACCTAGGCAGTGTTCAATGG
ATTGCCCTGTCGTGCCAACCATTGATTGAACCTGAAAGAAAATTTGCGGT
GGTTTTTCGAGAGAGTGTCTCCTCAAAAACCTTGGCGAGGAGTGGCCAGG
CTGAAAGAAAAGAGGGGGGAGAGTCAACGTACGACCGAGACCAAACGTCA
CGGAATATCGGGCGATGATGTACCCATGGGACTAGCTTGCATGTTTCGGA
GAGACGATTTCCTCGACCTGAGACAGAAAGTACTGTCTCGAAGCATCCTT
GTCGAGAAGTGAGAAGCTGTGGGTGGACGGAATTCTTAGGGGTGGGCGAC
AGAGAGGGCAAGTGGTACCATCAAGAGAGTCGATTGGAAAGGATACACAC
ACATCCATCTGTTCTTAACAATCGGCGCGGGACACCACAAAACTTGTCAC
GTTTCAAAGCCGTCGGTGGTGACTTTTCGAATCCAGGTGTACCACCTCCG
TGATTTAGCACGCTCGTGCACACTTCAATCCCAAATCCGTG

Coding sequence (CDS) from alignment at chr_00:1786292..1789782+

>Ec-00_001560.1 ID=Ec-00_001560.1|Name=Ec-00_001560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1128bp|location=Sequence derived from alignment at chr_00:1786292..1789782+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGCAGAAGAGATGCGCGACCAGGCGCATAGCGCTACCGCTCGCGAT
CCTGCTCGTCCTAACTGTTTTCTTGATCTGGCTAGAGTTCGCAGAGGGAG
GGCGGAAGCAGCAGGCGATTTCAAGGCGACGGACCAAGAAGTCCCGAGCA
GGTGTAGGGAAGGACTTCTCAGAGTTCCTGCTGGTGATCGGAGCTATTAT
GACTTGTGTGATCGCGCCAGTCTTTTTTTTTTTCCTCCACTCCATTTACA
AGGATCCAGCGACTCCTGAGCTGGCGCGGGCATGCTGGAATGCCGTCAAG
AGCAAGCTGCTATCCTACCTAGGACAGTCACCTGCGGTGCCCGGCTCCGT
CGTTGGTACAAACAACACGTTAGCCTCTTTGTCAACCCCTACAGCAGCCC
GACGTCGTACCCTCTACGCGAATGACAGCACCAACTACGTCGACATGCGC
AGGGACGAAAACGGCAACAAGACCTCTGGAGCTTCCTCGGCTTCGCGCCG
AGCCACAACAGCTAACACGCAACTGTACTCCGCTGGAGACGCCATCACCG
AACGATCTTATCTTGCTGTACCTAGGCCGAGTAGCCGAGACCAATCCCGG
CCCCGCCGATACCTTGATGATGACCAAAGGGAAGAACCACCGTACTACGG
CTACGCCGCCGCCGACAGGCGCTACCGCCGAAAAGGTGAAGATTTGCAAA
GGCACCCAGCACCAGGGTACACGGCACCCTACTCTTCAGGAGCAATTCTT
CCCGAACAAAGCGGAGGGGGGCTCAAGCTGGAAGAGGACGGATTTTCGGC
GGCAAGGGGGGCACAGCCTACAAGGTGGCGGGAATACGGCGGCAACGGCC
GTGACCATACCCTTCCCGCAAAAGACGTCAGGTTTCTCGGTGAGAACGAA
GCCCGCAGCTCCGAACCGCGCCGGAGAGTGGAGTGGGATCCATACCCAGA
TGATGATGACGATGATGTTGGCAAGGGGTTGCAGGGCAACCCAACGGTTG
ACGATCATATGGGTCGTGGCGTGTACAAAAGCACACAGAGCAAACGGACG
GTGGCAAGAAGCAAGCGGGCGAGGGCCACGAGAATCTCATTGGCTGGAAA
GACGAACGGTGGGAGACAGTCTTTGTGA

Synonyms

The feature 'Ec-00_001560.1' has the following synonyms


Synonym
Esi013_0251
Esi_013_0251