Ec-00_001530.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001530.2
Unique NameEc-00_001530.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length108
Homology
BLAST of Ec-00_001530.2 vs. uniprot
Match: D8LEA7_ECTSI (FHA-HIT protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA7_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 8.950e-98
Identity = 262/456 (57.46%), Postives = 286/456 (62.72%), Query Frame = 1
Query:  277 LKRARPSLGGSGTRIRLVMKACALPDVSKAGARCAYLVNPCNWRLSLVARGQTCSSTVLR---------EILYGRVA*RAAVRELWLRNLSR---LSLPGLSSAQRRSRYRDPVLGPNLDPRFPECLANEPDRARYLLRQCYDKTLDSFWKLVSSETSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCSGSAAAADTGVGKGAVTKRKRP*HCPSTDEHHQLP*KAPGTGRRCCFST*RMSRCPSSYRRGLFL----------G*PV-RCRLRRLPQVTVPPAPAAQTEVLDVKQASELRRDEHLSSLRQLHATATAVAEALSQQGAGVISAAITAFRRWSHCTCTSSARTSTVNVSQSASTGTALPQFFPGCFLGGSAAAGAW-ESRARQR--------ELKALEATPLRCFRCHSPMTNMTKLKEHLLGCNLPVPKKNSCGGGGSSDA 1548
            L+   P+L  +G   RLVMKACALPDVSKAGARCAYLVNPCNWRL  VA G   +  V R          +  GR   RA V E +   LS+   L   G+ +  +       VLGPNLDPRFPECLANEPDRARYLLRQCYDKTLDSFWKLVSSETSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCSGSAAAADTGVGKGAVTKRKR    P        P K  G  +   F   +    P   +R ++           G P  R  L  LP+           + LDVKQASELRRDEHLSSLRQLHATATAVAEALSQQGAGVI        R  +    S        +SQ   +     +     F        +W E+R  +R         LKALEATPLRCFRCHSPMTNMTKLKEHLLGCNLPVPKKNSCGGGGSSDA
Sbjct:   58 LREHAPALAEAGHESRLVMKACALPDVSKAGARCAYLVNPCNWRL--VAGGARTNMLVNRAAGDSLRQGSLEGGRT--RALVAEPFAVKLSQDSPLRSEGVDTVIQ-------VLGPNLDPRFPECLANEPDRARYLLRQCYDKTLDSFWKLVSSETSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCSGSAAAADTGVGKGAVTKRKRALALPEYRRTPPTPVKGAGHWKAVLFQYLKDEPMPVELQREVYFSDNQCVVVYDGYPKSRYHLLLLPK----------PKFLDVKQASELRRDEHLSSLRQLHATATAVAEALSQQGAGVI--------RCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTDFFLDASWVEARLLERGSLGLDKERLKALEATPLRCFRCHSPMTNMTKLKEHLLGCNLPVPKKNSCGGGGSSDA 484          
BLAST of Ec-00_001530.2 vs. uniprot
Match: A0A6H5K612_9PHAE (HIT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K612_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 1.050e-65
Identity = 220/429 (51.28%), Postives = 244/429 (56.88%), Query Frame = 1
Query:  277 LKRARPSLGGSGTRIRLVMKACALPDVSKAGARCAYLVNPCNWRLSLVARGQTCSSTVLR---------EILYGRVA*RAAVRELWLRNLSR---LSLPGLSSAQRRSRYRDPVLGPNLDPRFPECLANEPDRARYLLRQCYDKTLDSFWKLVSSETSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCSGSAAAADTGVGKGAVTKRKRP*HCPSTDEHHQLP*KAPGTGRRCCFST*RMSRCPSSYRRGLFL----------G*PV-RCRLRRLPQVTVPPAPAAQTEVLDVKQASELRRDEHLSSLRQLHATATAVAEALSQQGAGVI-----------------------SAAITAFRRWSHCTCTSSARTSTVNVSQSASTGTALPQFFPGCFLGGSAAAGAWESRARQRELKALEATP 1425
            L+   P L  +    RL+MKACALPDV KAGARCAYLVNPCNWRL  VA G   +  V R          +  GR   RA V E +   LS+   L   G+ +  +       VLGPNLDPRF ECLANEPDRARYLLR+CYDK+LDSFWKLVSSETSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      A ADT VGK  VTKRKR    P   +   +P K  G  +   F   +    P   +R +F           G P  R  L  LP+           + LDVKQASELRRDEHLSSLRQLHATA AVAEALSQQGAGVI                       S  +T  + W+  T                 TGT    FFPGCFLGGSAAAGAWESRARQRE +     P
Sbjct:   53 LREHAPGLAEARHESRLLMKACALPDVGKAGARCAYLVNPCNWRL--VAGGARTNMLVNRAAGDSLRQGSLEGGRT--RALVAEPFAVKLSQDSPLRSEGVDTVIQ-------VLGPNLDPRFAECLANEPDRARYLLRECYDKSLDSFWKLVSSETSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------AGADTAVGKEGVTKRKRALALPEYRQTPPVPVKGAGHWKAVLFQYLKDRPMPDELQREVFFSNDQCVVVYDGYPKSRYHLLLLPK----------PKFLDVKQASELRRDEHLSSLRQLHATAAAVAEALSQQGAGVIRCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFT-----------------TGT----FFPGCFLGGSAAAGAWESRARQREAEGAGGYP 433          
BLAST of Ec-00_001530.2 vs. uniprot
Match: A0A7S2SCH0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCH0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.720e-9
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 3
Query: 1215 QCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTVF 1334
            +CGYH IPSLEPLH+H+ISQDFDS  L  +KHWNSFTT +
Sbjct:  345 RCGYHAIPSLEPLHIHVISQDFDSPCLKTKKHWNSFTTDY 384          
BLAST of Ec-00_001530.2 vs. uniprot
Match: A0A0L0G1B2_9EUKA (C2H2-type domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G1B2_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 6.000e-9
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 3
Query: 1209 GYQCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTVF 1334
            G++ G H IPS+  LH+H+ISQDFDSERL  +KHWNSFTT +
Sbjct:  138 GFRAGIHAIPSVRQLHIHVISQDFDSERLKNKKHWNSFTTEY 179          
BLAST of Ec-00_001530.2 vs. uniprot
Match: A0A093EUS7_TYTAL (HIT domain-containing protein (Fragment) n=1 Tax=Tyto alba TaxID=56313 RepID=A0A093EUS7_TYTAL)

HSP 1 Score: 66.2 bits (160), Expect = 7.210e-9
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 3
Query: 1212 YQCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTVF 1334
            ++ GYH IPS+  LHLH+ISQDFDS  L  +KHWNSFTT F
Sbjct:   66 FRLGYHAIPSMSQLHLHVISQDFDSPALKTKKHWNSFTTDF 106          
BLAST of Ec-00_001530.2 vs. uniprot
Match: B3RKL3_TRIAD (HIT domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RKL3_TRIAD)

HSP 1 Score: 66.6 bits (161), Expect = 9.120e-9
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 3
Query: 1212 YQCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTVF 1334
            ++ GYH IPS+ PLH+H+ISQDF+S+ L  +KHWNSFTT F
Sbjct:   89 FRIGYHAIPSMTPLHVHVISQDFNSDCLKTKKHWNSFTTSF 129          
BLAST of Ec-00_001530.2 vs. uniprot
Match: UPI000BF630ED (aprataxin-like n=1 Tax=Varroa jacobsoni TaxID=62625 RepID=UPI000BF630ED)

HSP 1 Score: 66.6 bits (161), Expect = 1.050e-8
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 3
Query: 1212 YQCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTVF 1334
            ++ GYH +PS+  LHLH+ISQDFDS  L  +KHWNSFTT F
Sbjct:   96 FRLGYHAVPSMAQLHLHVISQDFDSPSLKTKKHWNSFTTAF 136          
BLAST of Ec-00_001530.2 vs. uniprot
Match: A0A2N9FWB7_FAGSY (HIT domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FWB7_FAGSY)

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-8
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 3
Query: 1212 YQCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTVF 1334
            ++ GYH  PS+  LH+H+ISQDFDS+ L K+KHWNSF T F
Sbjct:   81 FRLGYHSAPSMRQLHIHVISQDFDSKHLKKKKHWNSFNTAF 121          
BLAST of Ec-00_001530.2 vs. uniprot
Match: A0A8C3UJ45_CATUS (Aprataxin n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3UJ45_CATUS)

HSP 1 Score: 65.1 bits (157), Expect = 1.660e-8
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 3
Query: 1212 YQCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTVF 1334
            ++ GYH IPS+  LHLH+ISQDFDS  L  +KHWNSFTT +
Sbjct:  108 FRLGYHAIPSMSQLHLHVISQDFDSPALKTKKHWNSFTTDY 148          
BLAST of Ec-00_001530.2 vs. uniprot
Match: A0A8B7YVA2_ACAPL (aprataxin-like isoform X1 n=3 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YVA2_ACAPL)

HSP 1 Score: 67.0 bits (162), Expect = 1.810e-8
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 3
Query: 1185 GVISTGGWGYQCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTVF 1334
            G I   G  Y+ GYH +PS+  LHLH ISQDFDS  L  +KHWNSFT+ +
Sbjct:  133 GAIGEEGLSYRLGYHAVPSMSHLHLHAISQDFDSPSLKTKKHWNSFTSAY 182          
The following BLAST results are available for this feature:
BLAST of Ec-00_001530.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEA7_ECTSI8.950e-9857.46FHA-HIT protein n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5K612_9PHAE1.050e-6551.28HIT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2SCH0_9STRA2.720e-972.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0L0G1B2_9EUKA6.000e-964.29C2H2-type domain-containing protein n=1 Tax=Sphaer... [more]
A0A093EUS7_TYTAL7.210e-965.85HIT domain-containing protein (Fragment) n=1 Tax=T... [more]
B3RKL3_TRIAD9.120e-963.41HIT domain-containing protein n=2 Tax=Trichoplax T... [more]
UPI000BF630ED1.050e-863.41aprataxin-like n=1 Tax=Varroa jacobsoni TaxID=6262... [more]
A0A2N9FWB7_FAGSY1.600e-860.98HIT domain-containing protein n=2 Tax=Fagus sylvat... [more]
A0A8C3UJ45_CATUS1.660e-863.41Aprataxin n=1 Tax=Catharus ustulatus TaxID=91951 R... [more]
A0A8B7YVA2_ACAPL1.810e-856.00aprataxin-like isoform X1 n=3 Tax=Acanthaster plan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1752147..1761781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length3077
Hectar predicted targeting categoryother localisation
Gene idEc-00_001530.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001530Ec-00_001530Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1752140..1761786 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001530.2.1Ec-00_001530.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1752147..1752293 +
Ec-00_001530.2.2Ec-00_001530.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1752884..1753059 +
Ec-00_001530.2.3Ec-00_001530.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1753850..1753940 +
Ec-00_001530.2.4Ec-00_001530.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1754282..1754401 +
Ec-00_001530.2.5Ec-00_001530.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1754736..1754786 +
Ec-00_001530.2.6Ec-00_001530.2.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1755278..1755582 +
Ec-00_001530.2.7Ec-00_001530.2.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1756048..1756165 +
Ec-00_001530.2.8Ec-00_001530.2.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1756783..1756875 +
Ec-00_001530.2.9Ec-00_001530.2.9Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1757566..1757690 +
Ec-00_001530.2.10Ec-00_001530.2.10Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1758230..1758342 +
Ec-00_001530.2.11Ec-00_001530.2.11Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1759246..1759318 +
Ec-00_001530.2.12Ec-00_001530.2.12Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1760117..1761781 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0015305UTR:Ec-00_001530.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1752147..1752293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001530.2CDS:Ec-00_001530.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1760613..1760936 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0015303UTR:Ec-00_001530.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1760937..1761781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001530.2Ec-00_001530.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1760613..1760936 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001530.2 ID=Ec-00_001530.2|Name=Ec-00_001530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=108bp
MCSCNAYYIVFECVHCSGESVCIKIAAAHVTIRSWKRVRFILSRPVQKEK
VEHSLLLAVKEIRHSSGVLRLIAKFNWYPRTPPTLGVRVGMSDAVTLRFS
HALLSLP*
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spliced messenger RNA

>Ec-00_001530.2 ID=Ec-00_001530.2|Name=Ec-00_001530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3077bp|location=Sequence derived from alignment at chr_00:1752147..1761781+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CCACACACCTCACACTGCTGGACGGCCCGTGAGGTCCGTGGGGCGTTGCT
GGTTTGGCCAATGGAGGCACGCTCGTCACAGGGTCCTGGTGATCCTTGCC
TATCCGTTGCGCTTACATTGTTGTCGACCCAAGTTGGTGGATTTAAGGAA
GGAGATGTGGCTCCCGTGGCTGTCGCCGCGGCCCTCGACTTTCTCTCCTC
GCCGTGCAGGACTAGCGCGCGGTTCCCTGGACTACGCGTCGTGTTTGCGG
CCGAGGAAGGATCGACCGCTCTGGTGGCCTTAAGAGAGCACGCCCCAGCC
TTGGCGGAAGCGGGACACGAATCGCGGTTGGTGATGAAAGCGTGCGCGTT
GCCAGATGTGAGCAAGGCCGGGGCCCGCTGCGCCTACCTCGTCAACCCTT
GCAACTGGCGCCTGGTCGCTGGTGGCGCGAGGACAAACATGCTCGTCAAC
CGTGCTGCGGGAGATTCTCTACGGCAGGGTAGCTTAGAGGGCGGCCGTAC
GAGAGCTCTGGTTGCGGAACCTTTCGCGGTTAAGCTCTCCCAGGACTCTC
CTCTGCGCAGCGAAGGAGTCGATACCGTGATCCAGGTGCTCGGACCGAAC
CTAGACCCGCGGTTCCCCGAGTGCCTTGCCAACGAGCCCGACCGAGCGCG
CTACCTCCTCCGTCAGTGCTACGACAAGACCCTCGATAGCTTCTGGAAAC
TGGTATCGTCGGAAACATCCGGCGCAGCTGCCGTTGTCGCTACGCCCACT
GCTGCTGCCGATACCGCTGCGGCGGCCTCTGCTGCTGCTGCTCCGGGTGC
CAGTGGTGGTGGTGGTGGTGGGCACTGTAGTGGTAGTGCCGCTGCTGCTG
ATACTGGGGTCGGGAAGGGGGCCGTGACGAAAAGGAAACGAGCCTTAGCA
TTGCCCGAGTACCGACGAACACCACCAACTCCCGTGAAAGGCGCCGGGCA
CTGGAAGGCGGTGCTGTTTCAGTACCTGAAGGATGAGCCGATGCCCGTCG
AGCTACAGCGCGAGGTCTATTTCTCGGATAACCAGTGCGTTGTCGTCTAC
GACGGCTACCCCAAGTCACGGTACCACCTGCTCCTGCTGCCCAAACCGAA
GTTCCTGGACGTGAAACAAGCTTCGGAGCTCCGCCGGGATGAGCACCTCT
CAAGCCTGCGCCAGCTACACGCCACAGCAACGGCGGTGGCGGAGGCGTTA
TCTCAACAGGGGGCTGGGGTTATCAGGTGCGGCTATCACGGCATTCCGTC
GCTGGAGCCACTGCACCTGCACATCATCAGCCAGGACTTCGACAGTGAAC
GTCTCACAAAGCGCAAGCACTGGAACAGCTTTACCACAGATTTTTTCCTG
GATGCTTCTTGGGTGGAAGCGCGGCTGCTGGAGCGTGGGAGTCTCGGGCT
CGACAAAGAGAGGTTGAAGGCGCTGGAAGCTACTCCGCTACGATGCTTCC
GGTGCCATTCACCGATGACGAACATGACCAAGCTCAAGGAACACCTCCTG
GGCTGCAATTTACCCGTACCAAAAAAAAACAGCTGTGGCGGTGGAGGCAG
CAGCGATGCATAGAGAGCAATGGATGATTGGGGATAGAGTTGAAGCAGCT
GCCGAATGATTGGTCAGTTCTTGTAGTTGGTGTCTTCTCGCGAAGAAAAT
TGCAGAGTGTGTGATGTCAACGGAGCACGCGTGACGGCACTGATGTACGT
GGACACGACGCCCGCCTTCAGCCACGTGGATGAGGTCGATGTCGACGGCA
TATTCATTCTGATCATGATCATGTTCACTCGTTGGTTTTGGTTGGATTTG
CTATGACACCTACTCTTGCGTCTGCATAGCTCGAAGGGTGGCGTGTGTCA
TGCGGTGCAGAAAACAAATGTTTTGCAAGAACTTCAGAGAGCCAACAATG
CTAGCGAGATGTGCAGCTGCAATGCCTACTACATCGTGTTCGAATGTGTG
CATTGCAGCGGCGAAAGCGTCTGCATAAAGATCGCCGCGGCGCATGTCAC
CATCCGTTCTTGGAAACGGGTAAGGTTCATTCTGTCAAGGCCGGTGCAGA
AGGAAAAAGTAGAGCACTCACTGCTATTGGCGGTAAAAGAGATCAGACAC
TCGTCGGGAGTACTACGGCTTATCGCCAAGTTCAATTGGTACCCTCGCAC
ACCTCCGACACTTGGGGTGAGAGTTGGAATGTCGGACGCGGTCACGCTGC
GATTTTCTCACGCATTGTTGTCGTTGCCTTGACATAAAAAAAATCGTTCG
GTCTCTACTCAGTACCTTCTCACATCCCTGCCGTATGGTGAACTGACTCG
GGCGCGTTCCGCCGTCGAAGGTCAACTAGTATTCCAAAAATGAACACGAT
TTCTAGAAAAATAATTGTACTTGATAGAAAAAATAAAAATAGGGCGCAGA
AATCCTCAACAAATCTCCACACCAGATCACAAAAGACAGACCGGTAGGGT
AGGGGAATGTAACCCCGGAGGAAGGAAGAATCATCAGAAAAGAAATATTT
GGGGAGCACAGGAGGCCGGGACGCCCCATCCGGACAAAAGAAAGGGAGCC
CATCGCTCCCGCTCGGCACGCGGTGCGAACGAGGAAAAACGACAACAGAA
AAAACAATGTAGACCAATCAATCAGTGGTGGGCTAGAGACCAATCTCCAC
GACTCCCTCGCAGCTGGTCGTGAGTTCGATTCGTCCTCAGGAGGTTTTTC
TATCCCGGGATAAGTTTCCAACAACCTGCCGTTGAAAACGACCTAGGTCG
TGAGTATACAAACCTTGGCTTCACGGTCGACAAACCAAGGCATACACCGC
AGGGGGAAAGGAGGGGCAAAAAAAATACTGAACATAATGAAAAATGCTCC
GGTGGGAAGTGTGTGACCCCGGCTGATACGTCAGGTATGGTACAATATAT
ACGCCGAATGGCCTGAATACCGGCGCCAGAATAGATGGAAGAAACACACG
CGCACTCCAAAACGATATCGAGTGCAAGGTTGCAGCCTTCGTAGACGTGC
GCAGTTTTCTTCTGTTGCTACATACCGTTTCTGTCTTTTGTCTTTGATCC
CGAGAATGGGTTAGTCTCCCCCATGCC
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protein sequence of Ec-00_001530.2

>Ec-00_001530.2 ID=Ec-00_001530.2|Name=Ec-00_001530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=108bp
MCSCNAYYIVFECVHCSGESVCIKIAAAHVTIRSWKRVRFILSRPVQKEK
VEHSLLLAVKEIRHSSGVLRLIAKFNWYPRTPPTLGVRVGMSDAVTLRFS
HALLSLP*
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mRNA from alignment at chr_00:1752147..1761781+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001530.2 ID=Ec-00_001530.2|Name=Ec-00_001530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=9635bp|location=Sequence derived from alignment at chr_00:1752147..1761781+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CCACACACCTCACACTGCTGGACGGCCCGTGAGGTCCGTGGGGCGTTGCT GGTTTGGCCAATGGAGGCACGCTCGTCACAGGGTCCTGGTGATCCTTGCC TATCCGTTGCGCTTACATTGTTGTCGACCCAAGTTGGTGGATTTAAGGTA GGTTTGGCAGTTGCGCCGCATTTACGTCCATGGTTGTGCGGAGGCAGGAT GGCAGGATGCTCGACATTGACCTAGCGCAAGATCTCCTCAACCCTATGTA TGAAAGACGGCCCTTTCGCTCAATGTGTCATCTTACATGTAGGGTGGAAG GCGAAAGGGTCACTCGTAGTTCACGGACAAGATGAGATTGCTTGGGTGTA CCGTCACGGGACTGTCATTTTCCGCCCTATGGCATCTCGCGGAGAAAAGG CTTACTACCATGTGCCGAGTGCCGAGTGTATACATCTGCGAGTCCTTTTG AGTTGGTGTCTGCAGATGATCGACACGTACGTTGCATTTCCATATCCTGA AGGCACCCGACCTAGACTACTGCTAGTGAAAATATATTGAAGAGCGTTCC CACAAATCGTTGATAGGGTAGTCTACATGTCCTGCATATATGCCTTTGGT GCGTGAGTGGGCACGACCTGCGCCACTACTGTGTCTCCTCTCTCACTTTG CAACCACTCCCGCCGTGCGTCGACTCGCTACACCCGTGGCACATTGCATG CTCACCGCCACTCAACTGGCTGCTTCGGCAACGAAAGGAAGGAGATGTGG CTCCCGTGGCTGTCGCCGCGGCCCTCGACTTTCTCTCCTCGCCGTGCAGG ACTAGCGCGCGGTTCCCTGGACTACGCGTCGTGTTTGCGGCCGAGGAAGG ATCGACCGCTCTGGTGGCCTTAAGAGAGCACGCCCCAGCCTTGGCGGAAG CGGGACACGAATCGTGAGTCGTGCACTGAAAGTGGCCGATTTGTGTATGG GCGAGTCATGAATCGTGAGTCGTGCAATCACGTTGGCCGAGTGTAGGGAC GCCAGTAGGAACAAGCAGGTACACCAGGAGGTGAGCTGCAGCCGCAGGGC AGAGCATCCAAATCGTCGAAGGGGCGGAGCGTTCACCTTGAGTAGCCACC AGCGAGAGCGCGAACTCGTGAAACAAGGAAAAGTCTAATGCGCCCTGCTT CGGGTGTAGTGAGGCATTTTTTGTGTGGTGTGAACCGCTGCCGACTTTGC TTGCCGATCGATGTTGGGCGGAAATATTCTGTGCTCTACTGTTAGCGTGG ATGCCTACAATTTCCATGAGTAATTATCAAAACCGGTCGCCCACGCGGTC TAGTGGCGAGGTCGTGAGTTCGAATCCCCATGGGGTGAAAAATTTCAACT TTGGGGGTGAAAGCGAAAAAAGGCTGAAAAGCGCTCGTGAGTACCAAACT TCGACGTTAGCACCGTCGACGAGGGAAAGGGACGGCTGGACCCTTCTCGC AAAAAAAATAAAATTCAGCACGCACCGTAGGAGGAAGGTGGGGCACGAAG AGAAAAGAGAAGAAAAAAGCCCCAGTGTTTACCCCCTCCTGTGTGACCCT GGATGGTTGTAGTTGTACGAAAAAGTATGCTGAAAAGTGTAGTACTCCTG TGTAGTACACGCCTCACCGCGAAAAATGGGGGGACTGTCGCCATAATAAA TAGGGCGAAAACACACGCACACTTATTGGGATGAACGGGCTCTCTCTCAA CAGGCGGTTGGTGATGAAAGCGTGCGCGTTGCCAGATGTGAGCAAGGCCG GGGCCCGCTGCGCCTACCTCGTCAACCCTTGCAACTGGCGCCTGGTGAGT TATCATTTTGGTTATTTCGCGACTGGTCATGATGAATGGGGACAGCAATG AAATGCGACAGACCCAACGTGCTTCGGTCACCACTTGCCCTGCCACATGA TCTAGCCCAAGGTTTGGATTGCCCTGTGGCCGTATAACCATGTAGCTCCG CTGCTCGGTGCGCCACCTGCCGGCTCGCCACCCCTGTTGTCACCGAAAGG CCTCACCTCACAGCGGACCTCTGGCGACCAAGTTCTTCTCAACCAAATTT GACGCTGGGGAATTGAGTGTGTGCGCCAGCGTCTGCCAGTAGCATCGACA ATGGTGTTTGGCGAAATTTCAAACTTCCAACACAGGTCGCTGGTGGCGCG AGGACAAACATGCTCGTCAACCGTGCTGCGGGAGATTCTCTACGGCAGGG TAGCTTAGAGGGCGGCCGTACGAGAGCTCTGGTTGCGGAACCTTTCGCGG TTAAGGTGTGAATCTTCCAGGCTATGGATACGGGTAGCACTAACAGAGCG GACTTTTCGAAGGAGCGCTCGTGGCGAAAGATTCTTGCCGAGGTTGCAGC GGACGTAGAAGAACGCGATTTACCAGAAAAGGACTGTTTTCGATGAGCAA GAGGGCGCCGGCGTTTCGTGGACCCCGTCGTAGCCTCGAAGAAGGTTGAA GCACACAGAAATGACGTGCGTCGTGCATTGAAGTTCAGTCAGATTACCCT CATTGTTTACAAAGTGTTCGCGAGAAATTTCTAGGTAGGAGGTAACCGAA TGGTTTCGCGAAACGCACGCCGCCCCCGAAATGTTACAGCTCTCCCAGGA CTCTCCTCTGCGCAGCGAAGGAGTCGATACCGTGATCCAGGTGTGTGCGC GATTGGTGAAGCAAAATATGAAAAGTGGATCCCAAGGCGTTGAATAGACG CGTCGCAAGGATAGAATGGAAACGATGTGCCCCAGGAGTGGGTAAGCTCG TGTGGGTCGGGCGCTCAAATCACATGCACTGCAGGGTAGGAGATCTCTTT GTGCGACACCACCCAGTCGACCGGATCCATCTCGTGTCGTCGTGTCTATC TGGGGTGTTTCGTACTCCAGTGCTTTTTTTCTCCCCCAAGAGAACGAAGC TCATAAGCGACCGTGTTGACGTTCAATGCTAAAACGATCATGGAGTGATG CAGCGCGATGACTCAGCGCCGTCATGCAGTTGCGGCGATGATTTTTCGCA GAAATATCAAGCATTCTTTTGCAGTGATGCAAACGTGTCAGTTTCGTATC ATTCGGTTTATAGAAGACCCACCCCCTGCACTAAGTCTACGTGCTTGCGT ATCGTGCGCCAATGAACGTGTGATGGTCCAGGTGCTCGGACCGAACCTAG ACCCGCGGTTCCCCGAGTGCCTTGCCAACGAGCCCGACCGAGCGCGCTAC CTCCTCCGTCAGTGCTACGACAAGACCCTCGATAGCTTCTGGAAACTGGT ATCGTCGGAAACATCCGGCGCAGCTGCCGTTGTCGCTACGCCCACTGCTG CTGCCGATACCGCTGCGGCGGCCTCTGCTGCTGCTGCTCCGGGTGCCAGT GGTGGTGGTGGTGGTGGGCACTGTAGTGGTAGTGCCGCTGCTGCTGATAC TGGGGTCGGGAAGGGGGCCGTGACGAAAAGGAAACGGTGAGTAGAAGAAG ATATCTGACGTGTTGTTCGCGTTCATCTTTCGTTCTTCACTCGCCCGCCA CTGTTGTTCTTCACTGTTCGGGTTTGGTGATGCTGTGATGCATGCTGCTG TCGTGCGTGGCCGTCGCTTGAATTTGGTTTGTTGTGTTGAAGGCGCCCTT GCACTCGGTGCCGTGGGAAGCTAGCGCCTGTTGAAGGGTTTCGGCTTGCT CATTTCTTGTGGATGCTTTATGGCCACCTGGTGTTGTACATCCGGTGTCC CGCGATTGGCCATTTGACTGTTGGTACTCACGCTGGATGCTTGCTTGCTG ATGATGCGTGCTAGAAAGTTTGCACAACAGCAATGAATGGCCGCCAGGGT TGATGTTGATAATTGTGTTCGTGTTTGATGTTCTCGTTCACCGTCTTTAT TTCGCTTTCCCCACATTTTCCCTCCGTATTATTGGCGACCTTCCGCGCAA GAGCCTTAGCATTGCCCGAGTACCGACGAACACCACCAACTCCCGTGAAA GGCGCCGGGCACTGGAAGGCGGTGCTGTTTCAGTACCTGAAGGATGAGCC GATGCCCGTCGAGCTACAGGTACAGCGGGTCTATGTACTACGTCGAATCT ATCAAGTTGTCGCGGACATGATACGGCATGTTGGGGGGGGGGTCGCCATT CGTACCGGCGCAAGGTGTGGGGCGGGGAATGCGGAAGGTGGGCGGGGGCG TGTTCTTCGAATTGGTTCGGAGTTCATTTCATGCCTTGGCGAGCACTTAC TCTGTTTGTAGTCCGTGCGGAGGTATTTCAATTACGGAAAAAATTAACAG TATTTCTACTAGAGCTCATGGTGGTGTTTCAGCACTTACTCCACGTGTAC CAATATCGATTGGATCAATCCCGCGCACCTTGACCTCATTGGTCATTGTG TACGCCTGGCCGCCGTCACCAGCGATTTCACTCCCTTTGAGGGAAATTGT GCTTGGTTGCCTGGGGTTTCAATTTGAGAAACTCGTATGCTTTCGTGCTG TAAACGCATGAGGATTTCGAAAACGTTTTTTTCATGAGTTCTCGTTCGTC GGCGGCGTATACACGCCCGAACACCCCTCTAACCTCTTTGGGCACAAGCT CGAGTTTCGCGTTGGCATTGTTTACCCCCTTACCGACGCTGCCATTCGAA AATATATTTTATATGTACTGTGCCACTCGCCTGCAGCGCGAGGTCTATTT CTCGGATAACCAGTGCGTTGTCGTCTACGACGGCTACCCCAAGTCACGGT ACCACCTGCTCCTGCTGCCCAAACCGAAGGTGGGAGGTATGGCGTGAGAA ACGTTATTTTCGTCTTGCTGATGTGTTCTACCGTTCTACCTCAGTGTTCG GGTCGCCCTACCTTTGTTGCTGTTTTTCTTGGCTTGTCTTCGCATTGTTT TCAAGCCGTGCTTGGCTCTGTCGTTTCACTTGTTCCGTGAAATGAAGCGG GACCTCTTGCTCGGGCTGGCTGCATACCCGTGTTGAGAGTGACGAGAAGG TTCTTCTATGCTGTTCGGGTTGATTTAACGCTTCCACACTGTGTTGTTTG GTATTGCAGCGCGGCCCCCGGAGGTAAAAGTATTGTCTCTGCTGCTTTTC CCACCGCGTAACTTCCGCGTCGCAACGAGCTCGGGGAACTTCCTCCAAAG AGAAGATCGTTTTGCCTGCCCAATACATACATCGTTCGAAATGTGGCAGG AATCGAGCGAGTGATCCAGAGATATGTAAGAGTGTGTGGCGATCAGTCTC GACAGGGAACGTGTACGTGTCTCGCCCTAACACCGCAAACGAAAAAGGAC ATGTGTAAACGCACACGTACCACGTTCTCCTGTCTCCTGGCGGTCGCTCC CAAGGTTCCCGTACACGGCTCCCATGCCTACTACTGCTGTGGCTCCTTAA TCCGTGCTCCCTCGTTGTATTCCTTCGATGCCAACAACGAAAAACGAACT CCGCGCCTTCACCGTGAAGTTCCTGGACGTGAAACAAGCTTCGGAGCTCC GCCGGGATGAGCACCTCTCAAGCCTGCGCCAGCTACACGCCACAGCAACG GCGGTGGCGGAGGCGTTATCTCAACAGGGGGCTGGGGTTATCAGGTACGG TGAACGGTACCGCCATTGACTGCAACAATGTGTACACTTATGGATTCCCG GGTGTGATTTCTTGGTGTTTTTTTTTTTATCGGGCAACTCATCGCGTGCA GTTTGGACGGGAACGAACGGAAGAGAGGGGAGTCGAGTGGAAAACACGCG AAGAAAGGAGATTTGTCGTTCCGGGAAACCGCAGGTTACATGCGAACAAT TCGTCTCCACTGCTGGCCGGTTTGCCGGATATGTCGACATCAAAACAATT CTGCCTAGGCGGGGTGCACGGAATCGCGACCCCGCGGGTGAACACGCCGT CATGTTCCAGTTTGACCCTGACACACAGAACGCTCTGATTCTTGGCATTC GATCGCTTGGATGGCGAGAGTCACTTGCCATGTTTCTGCGAGTGACCCCA AAGTCTTGATGATAATTTTGTGAGCCGCTGTCAGAATGAAGGCGCGGAGA GTCGTCGCTGTATTCGAAGGCACTACCAAGTCATCGCAGTGACACTTCTA AATTGCTGCATCCCGCATGCAATCATTGTCAAGGTGCGGCTATCACGGCA TTCCGTCGCTGGAGCCACTGCACCTGCACATCATCAGCCAGGACTTCGAC AGTGAACGTCTCACAAAGCGCAAGCACTGGAACAGCTTTACCACAGGCAC GTGTATGAAACGTCATCGCTCTCCGCCGCTGCTGAGGATGCTCGACCGTA TTTTGGCCTGGCCTTGATGTGCACGTTTGGTATTAGAGAAAGCAGTGGGA GAACCAATCGTGGAAACGAGACTCTCGAATCGGCATTGAAGACCTATTTT ATCTACCTGTAGAAGAAGCAACTTGTGCCGGGGTTTCGGCCTGCTCGAAC ACGTAAAACTATTTTGAGTTCAAACACACCTAGCGCTACTGTCTTTTCGA CACCAGGGTGAAAACTGATGCCAAACTTCTATGAGCGTGTGCCGGGTGTG GCCAACGTGGGCAGACTCTGCCTTAGGTGATGAAATTTTCACCACAGCTT TTGAAATGTAATGCTTCCGGGGTCGTTGTCGCTTCACAACGCCCGGATGC ACATGTTTCCATCCGTGGTTGCCCTTGTGACCCCGTTCAACACTGGCTCT AACCTTGATGGGTTCGGGTTAGCACAATTCGAGGCACGATCACTTTGGCA AGGCTTATGTGTGATATACCGAGGGTGTCGTTTGTACCGCTGCTGCATGT TTGCCATCCGTTTCCATGAGGCGTGTGGGCCCACTATTGGTTCCACCACC TTCCAGCCAAGCCACGTTTCACTCTTTCCAACAATACCCAACCATCCTAT GAACGCTGGTCTGAGCGTAATTCATTCCCATGTACTGTCATGCTATTTTC CCGAAACCCTGTGGAGGCTGACCCGGCCTAGTCGTGCACGGGCTGAGCTT AAGTTTGGTCCCAATTTCTTATATGATGTTTGTGTCTTTGGTGCGTATTG TCCATTTACCACCCCACCCATTTAGTTTACCACTCTACCCATTTACCACG CCTTCACTTGGCTTTTTTGGGTATCTGGGACTCTCCCCGCATTCCGCAGA TTTTTTCCTGGATGCTTCTTGGGTGGAAGCGCGGCTGCTGGAGCGTGGGA GTCTCGGGCTCGACAAAGAGAGGTGCTTTGACATTCGAGAGCTTCACACG CTCCCCATTCCTCATGAAGACTCATCTCATTGTACATATACGGGCCTTTT CGATATTTTCGTGGATCCGGCGAGGTTTGTTCCTGGGCATACATCGAAGT TAGCCGCGCGCTATTTGCCCTGGGTACATCCTGGTCGGCATGAATATACC GTCAGGATTGCGTTTCAGCGGTAACGAGAGTTGCTACAGAAACGAGGCCC AAATCACTCGTTGTCGTTCGACGAACAGTTAACGGTGCGGACACATACCG TCCCCCACGTTGATGTTGCCTGTGTAGAATGCATTTTCCTGGCTTCGTTG CTGGTATTGTGAGGGTGTACGCTCGCGTGGTGCAGCCCGTGCGTCATTAT TGCAGCTGCAGAGCATACCCGCTGTACCATATCACCTCCCCTAATGTCTC TTTGTTATTGGATGTTGGCAAGCGCCTGCCCTCGGCGGGGAGCAGCCAGC GGGAAACTTCCGTTGTGTACGAGAGTGACACAAAGTGTGCCTCTTTCAGT CTGTCAGGCCATCCATGCTGTTGTGCACAGGATTAACCCCGTCCTTCATT TTTAAGTGCTCGATTCAACACGAACCTCATGCACGGCAGGGTTTGGAGAC TTTCGGAGTCGTCAAACGCACTTTAACCACTCAAAATCTTCCGGGTAACA ACCGATTTTGCTTGCTTCATGTTCCGCGGTTAGTAATGATGAAAATGTGA CGTGGATGTTCTTCTTCCTGTTGTGACTCTCGCTTCCAATTGGTTTGTGG GTGGTTGTTCTTTTCCGCAGGTTGAAGGCGCTGGAAGCTACTCCGCTACG ATGCTTCCGGTGCCATTCACCGATGACGAACATGACCAAGCTCAAGGAAC ACCTCCTGGGCTGCAATTTACCCGTACCAAAAAAAAACAGCTGTGGCGGT GGAGGCAGCAGCGATGCATAGAGAGCAATGGATGATTGGGGATAGAGTTG AAGCAGCTGCCGAATGATTGGTCAGTTCTTGTAGTTGGTGTCTTCTCGCG AAGAAAATTGCAGAGTGTGTGATGTCAACGGAGCACGCGTGACGGCACTG ATGTACGTGGACACGACGCCCGCCTTCAGCCACGTGGATGAGGTCGATGT CGACGGCATATTCATTCTGATCATGATCATGTTCACTCGTTGGTTTTGGT TGGATTTGCTATGACACCTACTCTTGCGTCTGCATAGCTCGAAGGGTGGC GTGTGTCATGCGGTGCAGAAAACAAATGTTTTGCAAGAACTTCAGAGAGC CAACAATGCTAGCGAGATGTGCAGCTGCAATGCCTACTACATCGTGTTCG AATGTGTGCATTGCAGCGGCGAAAGCGTCTGCATAAAGATCGCCGCGGCG CATGTCACCATCCGTTCTTGGAAACGGGTAAGGTTCATTCTGTCAAGGCC GGTGCAGAAGGAAAAAGTAGAGCACTCACTGCTATTGGCGGTAAAAGAGA TCAGACACTCGTCGGGAGTACTACGGCTTATCGCCAAGTTCAATTGGTAC CCTCGCACACCTCCGACACTTGGGGTGAGAGTTGGAATGTCGGACGCGGT CACGCTGCGATTTTCTCACGCATTGTTGTCGTTGCCTTGACATAAAAAAA ATCGTTCGGTCTCTACTCAGTACCTTCTCACATCCCTGCCGTATGGTGAA CTGACTCGGGCGCGTTCCGCCGTCGAAGGTCAACTAGTATTCCAAAAATG AACACGATTTCTAGAAAAATAATTGTACTTGATAGAAAAAATAAAAATAG GGCGCAGAAATCCTCAACAAATCTCCACACCAGATCACAAAAGACAGACC GGTAGGGTAGGGGAATGTAACCCCGGAGGAAGGAAGAATCATCAGAAAAG AAATATTTGGGGAGCACAGGAGGCCGGGACGCCCCATCCGGACAAAAGAA AGGGAGCCCATCGCTCCCGCTCGGCACGCGGTGCGAACGAGGAAAAACGA CAACAGAAAAAACAATGTAGACCAATCAATCAGTGGTGGGCTAGAGACCA ATCTCCACGACTCCCTCGCAGCTGGTCGTGAGTTCGATTCGTCCTCAGGA GGTTTTTCTATCCCGGGATAAGTTTCCAACAACCTGCCGTTGAAAACGAC CTAGGTCGTGAGTATACAAACCTTGGCTTCACGGTCGACAAACCAAGGCA TACACCGCAGGGGGAAAGGAGGGGCAAAAAAAATACTGAACATAATGAAA AATGCTCCGGTGGGAAGTGTGTGACCCCGGCTGATACGTCAGGTATGGTA CAATATATACGCCGAATGGCCTGAATACCGGCGCCAGAATAGATGGAAGA AACACACGCGCACTCCAAAACGATATCGAGTGCAAGGTTGCAGCCTTCGT AGACGTGCGCAGTTTTCTTCTGTTGCTACATACCGTTTCTGTCTTTTGTC TTTGATCCCGAGAATGGGTTAGTCTCCCCCATGCC
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Coding sequence (CDS) from alignment at chr_00:1752147..1761781+

>Ec-00_001530.2 ID=Ec-00_001530.2|Name=Ec-00_001530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=324bp|location=Sequence derived from alignment at chr_00:1752147..1761781+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGCAGCTGCAATGCCTACTACATCGTGTTCGAATGTGTGCATTGCAG
CGGCGAAAGCGTCTGCATAAAGATCGCCGCGGCGCATGTCACCATCCGTT
CTTGGAAACGGGTAAGGTTCATTCTGTCAAGGCCGGTGCAGAAGGAAAAA
GTAGAGCACTCACTGCTATTGGCGGTAAAAGAGATCAGACACTCGTCGGG
AGTACTACGGCTTATCGCCAAGTTCAATTGGTACCCTCGCACACCTCCGA
CACTTGGGGTGAGAGTTGGAATGTCGGACGCGGTCACGCTGCGATTTTCT
CACGCATTGTTGTCGTTGCCTTGA
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Synonyms
The feature 'Ec-00_001530.2' has the following synonyms
Synonym
Esi0013_0113
Esi_0013_0113