Ec-00_001330.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001330.1
Unique NameEc-00_001330.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length75
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_001330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1580636..1582158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1200
Hectar predicted targeting categorymitochondrion
Gene idEc-00_001330.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001330Ec-00_001330Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1580636..1582158 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001330.1.2Ec-00_001330.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1580636..1581604 -
Ec-00_001330.1.1Ec-00_001330.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1581928..1582158 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0013303UTR:Ec-00_001330.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1580636..1581518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001330.1CDS:Ec-00_001330.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1581519..1581604 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0013305UTR:Ec-00_001330.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1582067..1582158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001330.1Ec-00_001330.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1581519..1582066 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001330.1 ID=Ec-00_001330.1|Name=Ec-00_001330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=75bp
MLSRARNRIVLVSATAYPRTPILPASLASQRTLDAPNGTMRVAVDLGVLY
VVLRLCPYSLVPAAIICRIEKSFR*
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spliced messenger RNA

>Ec-00_001330.1 ID=Ec-00_001330.1|Name=Ec-00_001330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1200bp|location=Sequence derived from alignment at chr_00:1580636..1582158- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTCGAGCAGCCGGGGAGAGAAACATTGAAGTCTCATCTGACGTAGCACGG
GGCGCTTCAACCCGTTCCTCGTGAGTTGCCATCTCCACTATCATGCTGTC
AAGGGCGAGAAATCGAATCGTACTGGTCTCAGCAACTGCGTATCCTCGGA
CCCCGATTCTGCCGGCCTCGCTCGCTTCTCAACGGACGTTGGACGCCCCG
AACGGGACGATGCGGGTAGCTGTTGATTTAGGTGTCTTGTACGTCGTGCT
TCGTCTTTGCCCATACTCTTTGGTGCCGGCGGCGATCATCTGTCGGATTG
AAAAGTCATTCCGTTGAATGCGGCCATTCTGCGTGCGATTGGGGCAACCC
AATGATGCATTTCGCTCGTGGGCCCTCAGTATCATCAGCGATGACATTGT
GTGATGAGGCCACTCACCCGGGAACATGGAAGTTCAACTGTTGCATGCAT
AGACGATCGTGGATTGATTGCATCGTAGTATTTGATATGCCATGCGGTGG
TGTGGCTGGTGATTTCCGTCGTAGATTGTAGAGATGCTGTAGTTGCCTCG
ATTTCCTTGTGTTGTCTCAGGAAACAAGGGACAGAAACTGAATCCCCCTT
AACGGGAGCTTCAGAGTTGCCATTGACTCGGAGGGAGGAGTGCGAGATGA
CGTGGAGGCCCGTCCCTTTTTTTGTCGGCACTACATGTGGCCGCTCCTGC
CAAAGTTTCCAATGCTCCGAAGCGAGTGTTGACGTTGCTAGAATAATAGT
GCTTCCTTAGATTGTTATCCTCGCTTCTCCACCCAAGTATCCCCGGAAAA
TGGGGTAGCGTGTGTTTCTTGAGTTGTTCGCTTGGGCCAGTAGAAACAGG
ATCAAAGTAAACGAAACAACGTAAAGAGTAGAGAGGGGTCAAGGAATAAG
TATAGGTTGTTATGGTCCGTGCACACCAATATGCCATTCACCCTTTACGC
GACAACTTGAAAAAGAAAACGAGTTGAAACGTGAAACAACGATCGGCGAT
ATTCATCCGTGACCGCATCGTCGAGCTACGTCGAAGCTGTTGAGTTTGTT
TCTGTATGAGAAAATACGTCATTGTTGGCCGAAAAAGGACCCACGGAGTC
CCCTTTCTCACCACGGTTTTCCCCCCATTAATCACCACGGAGCCTCCTCT
GATATCCCCCCGCTCTGCATCACTCGTACAGAAGCATGCATCTGGCGACC
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protein sequence of Ec-00_001330.1

>Ec-00_001330.1 ID=Ec-00_001330.1|Name=Ec-00_001330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=75bp
MLSRARNRIVLVSATAYPRTPILPASLASQRTLDAPNGTMRVAVDLGVLY
VVLRLCPYSLVPAAIICRIEKSFR*
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mRNA from alignment at chr_00:1580636..1582158-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001330.1 ID=Ec-00_001330.1|Name=Ec-00_001330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1523bp|location=Sequence derived from alignment at chr_00:1580636..1582158- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTCGAGCAGCCGGGGAGAGAAACATTGAAGTCTCATCTGACGTAGCACGG
GGCGCTTCAACCCGTTCCTCGTGAGTTGCCATCTCCACTATCATGCTGTC
AAGGGCGAGAAATCGAATCGTACTGGTCTCAGCAACTGCGTATCCTCGGA
CCCCGATTCTGCCGGCCTCGCTCGCTTCTCAACGGACGTTGGACGCCCCG
AACGGGACGATGCGGGTAGCTGTTGATTTAGGTGCGTTTTCGAGTATAGT
TCTTCATTTCCGAGCGAGCGACAAGAGATAGTCAACAGCCCAAACATAGG
AGGGATTGGAGGATTGCCGCGCGAAGTATGTCGGCAGCAGTCCCAAGCAT
TTCGGAATCGACAAAAGGCGAAGCAATGATTTGAATTGTGCGATAGCTCG
AACCCTACCTCGCCCCGTTGCGGCGCCGCTTGTACTCCTCCTTGTGCCTG
CCCAGCACAATTCTTACTCGCTACAACGGTCTCCTTTGTAGGGTCCTCGG
CTAAGAACTGATCGCTTCGGTTGTTGCCACTCCTCGTCCTCGCCTGTGTT
ACAGGTGTCTTGTACGTCGTGCTTCGTCTTTGCCCATACTCTTTGGTGCC
GGCGGCGATCATCTGTCGGATTGAAAAGTCATTCCGTTGAATGCGGCCAT
TCTGCGTGCGATTGGGGCAACCCAATGATGCATTTCGCTCGTGGGCCCTC
AGTATCATCAGCGATGACATTGTGTGATGAGGCCACTCACCCGGGAACAT
GGAAGTTCAACTGTTGCATGCATAGACGATCGTGGATTGATTGCATCGTA
GTATTTGATATGCCATGCGGTGGTGTGGCTGGTGATTTCCGTCGTAGATT
GTAGAGATGCTGTAGTTGCCTCGATTTCCTTGTGTTGTCTCAGGAAACAA
GGGACAGAAACTGAATCCCCCTTAACGGGAGCTTCAGAGTTGCCATTGAC
TCGGAGGGAGGAGTGCGAGATGACGTGGAGGCCCGTCCCTTTTTTTGTCG
GCACTACATGTGGCCGCTCCTGCCAAAGTTTCCAATGCTCCGAAGCGAGT
GTTGACGTTGCTAGAATAATAGTGCTTCCTTAGATTGTTATCCTCGCTTC
TCCACCCAAGTATCCCCGGAAAATGGGGTAGCGTGTGTTTCTTGAGTTGT
TCGCTTGGGCCAGTAGAAACAGGATCAAAGTAAACGAAACAACGTAAAGA
GTAGAGAGGGGTCAAGGAATAAGTATAGGTTGTTATGGTCCGTGCACACC
AATATGCCATTCACCCTTTACGCGACAACTTGAAAAAGAAAACGAGTTGA
AACGTGAAACAACGATCGGCGATATTCATCCGTGACCGCATCGTCGAGCT
ACGTCGAAGCTGTTGAGTTTGTTTCTGTATGAGAAAATACGTCATTGTTG
GCCGAAAAAGGACCCACGGAGTCCCCTTTCTCACCACGGTTTTCCCCCCA
TTAATCACCACGGAGCCTCCTCTGATATCCCCCCGCTCTGCATCACTCGT
ACAGAAGCATGCATCTGGCGACC
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Coding sequence (CDS) from alignment at chr_00:1580636..1582158-

>Ec-00_001330.1 ID=Ec-00_001330.1|Name=Ec-00_001330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=225bp|location=Sequence derived from alignment at chr_00:1580636..1582158- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGTCAAGGGCGAGAAATCGAATCGTACTGGTCTCAGCAACTGCGTA
TCCTCGGACCCCGATTCTGCCGGCCTCGCTCGCTTCTCAACGGACGTTGG
ACGCCCCGAACGGGACGATGCGGGTAGCTGTTGATTTAGGTGTCTTGTAC
GTCGTGCTTCGTCTTTGCCCATACTCTTTGGTGCCGGCGGCGATCATCTG
TCGGATTGAAAAGTCATTCCGTTGA
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Synonyms
The feature 'Ec-00_001330.1' has the following synonyms
Synonym
Esi013_0250
Esi_013_0250