Ec-00_001270.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001270.1
Unique NameEc-00_001270.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length90
Homology
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BLAST of Ec-00_001270.1 vs. uniprot
Match: A0A6H5KUU3_9PHAE (PRP1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU3_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.800e-12
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 3 
Query:  123 GAPSNHVAGLGRGAVGFTKWSDIGPARTTLAELGA 227
            GAPSNHVAGLGRGAVGFT  SDIGPARTT+AELGA
Sbjct:   16 GAPSNHVAGLGRGAVGFTNRSDIGPARTTIAELGA 50
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BLAST of Ec-00_001270.1 vs. uniprot
Match: A0A6H5L0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.590e-9
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:  105 TYQHCCGAPSNHVAGLGRGAVGFTKWSDIGPARTTLAELGAA 230
            TY    GAPSN+VAGLGRGAVGFT  SDIGPART LAE GAA
Sbjct:   13 TYN--AGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAA 52
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BLAST of Ec-00_001270.1 vs. uniprot
Match: A0A7S4D952_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D952_HETAK)

HSP 1 Score: 52.0 bits (123), Expect = 5.980e-6
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:  129 PSNHVAGLGRGAVGFTKWSDIGPARTTLAELGAA 230
            PSN+VAGLGRGAVGFT  SDIGPART   + GAA
Sbjct:   18 PSNYVAGLGRGAVGFTTRSDIGPARTAAPQSGAA 51
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BLAST of Ec-00_001270.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.700e-5
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 3 
Query:  114 HCCGAPSNHVAGLGRGAVGFTKWSDIGPARTTLAELGAAA 233
            +  GAP+N+V GLGRGAVGFT  SDIGPAR+ L   G AA
Sbjct:   12 YASGAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAA 51
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BLAST of Ec-00_001270.1 vs. uniprot
Match: A0A7S1SXG7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SXG7_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 4.990e-5
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 3 
Query:  126 APSNHVAGLGRGAVGFTKWSDIGPARTTL 212
            APSN+VAGLGRGA GFT  SDIGPART L
Sbjct:   25 APSNYVAGLGRGATGFTTRSDIGPARTAL 53
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BLAST of Ec-00_001270.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)

HSP 1 Score: 50.1 bits (118), Expect = 5.040e-5
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 3 
Query:  114 HCCGAPSNHVAGLGRGAVGFTKWSDIGPARTTLAELGAAA 233
            +  GAP+N+V GLGRGAVGFT  SDIGPAR  +A  G+ A
Sbjct:   12 YASGAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGA 51
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BLAST of Ec-00_001270.1 vs. uniprot
Match: F0VZ29_9STRA (Uncharacterized protein AlNc14C1G170 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZ29_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 9.420e-5
Identity = 28/45 (62.22%), Postives = 29/45 (64.44%), Query Frame = 3 
Query:  114 HCCGAPSNHVAGLGRGAVGFTKWSDIGPARTTLAELGAAARLARP 248
            H   AP N+V GLGRGAVGFT  SDIGPAR  LA  G A   A P
Sbjct:   34 HESDAPENYVPGLGRGAVGFTTRSDIGPARNPLAPEGLAVAGAGP 78
The following BLAST results are available for this feature:
BLAST of Ec-00_001270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KUU3_9PHAE3.800e-1291.43PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L0M8_9PHAE2.590e-978.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4D952_HETAK5.980e-676.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6YDN0_9STRA2.700e-565.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S1SXG7_9CHLO4.990e-582.76Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
K3WCC0_GLOUD5.040e-562.50PRP1_N domain-containing protein n=1 Tax=Globispor... [more]
F0VZ29_9STRA9.420e-562.22Uncharacterized protein AlNc14C1G170 n=1 Tax=Albug... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1536748..1537713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length270
Hectar predicted targeting categoryother localisation
Gene idEc-00_001270.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001270Ec-00_001270Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1536748..1537713 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001270.1.3Ec-00_001270.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1536748..1536894 -
Ec-00_001270.1.2Ec-00_001270.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1537322..1537379 -
Ec-00_001270.1.1Ec-00_001270.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1537649..1537713 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001270.1CDS:Ec-00_001270.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1536748..1536894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001270.1Ec-00_001270.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1536748..1537713 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001270.1 ID=Ec-00_001270.1|Name=Ec-00_001270.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=90bp
MAMRGLGKKTPAQPTAVTVMRWKGPSQASSSGTAVRTNTAAVPLRTTSLV
SDAVPWVSPSGPTSVPPAPLSPSSGPPPAWRDLCVVRRF*
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spliced messenger RNA

>Ec-00_001270.1 ID=Ec-00_001270.1|Name=Ec-00_001270.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=270bp|location=Sequence derived from alignment at chr_00:1536748..1537713- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATGCGAGGCTTGGGAAAGAAAACTCCTGCACAACCTACAGCAGT
GACGGTGATGAGATGGAAGGGCCCGTCACAGGCCTCCTCGTCTGGGACTG
CTGTACGTACCAACACTGCTGCGGTGCCCCTTCGAACCACGTCGCTGGTC
TCGGACGCGGTGCCGTGGGTTTCACCAAGTGGTCCGACATCGGTCCCGCC
CGCACCACTCTCGCCGAGCTCGGGGCCGCCGCCCGCCTGGCGCGACCTGT
GCGTCGTGCGGCGTTTCTAA
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protein sequence of Ec-00_001270.1

>Ec-00_001270.1 ID=Ec-00_001270.1|Name=Ec-00_001270.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=90bp
MAMRGLGKKTPAQPTAVTVMRWKGPSQASSSGTAVRTNTAAVPLRTTSLV
SDAVPWVSPSGPTSVPPAPLSPSSGPPPAWRDLCVVRRF*
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mRNA from alignment at chr_00:1536748..1537713-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001270.1 ID=Ec-00_001270.1|Name=Ec-00_001270.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=966bp|location=Sequence derived from alignment at chr_00:1536748..1537713- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGATGCGAGGCTTGGGAAAGAAAACTCCTGCACAACCTACAGCAGT
GACGGTGATGAGATGGTAATTCATGAGGTTAGGCAGGAATATGGCGGAGA
TCCGTTGCTGTATGTAGCGTACGCAACGTTGTTGGTACCGCACACCCTCC
TAGTCTCTTCGAGGGGAAAGGGAAGACAGAAGAGCGTATTGTGCTATCGA
AAGACGTTTAGTCTATCTGCATGTGCTGCAAACGAACGATGTTCACTGTG
CTTCCATCCTACGTGCTACATATGAAAAATTGCAAATGCCGTTGTATTGT
ACCTTTACTCGATGTACCTTTTGATACACCACAGGAAGGGCCCGTCACAG
GCCTCCTCGTCTGGGACTGCTGTACGTACCAACACTGCTGCGGTATGTAA
GGGCATTCCCAATGACACATTATGCAGTATCGCCAGCGCCGGAGGGGGGG
GGCATTTTGTTAGGACCTGGAAGGCTGCCAAAAAAATAATTCGTTTGCAT
CCGTCGTGACGGACGGCTTCCACAGATACGGGGCGTTGGTGGGCTATCGC
TCCAACATCGAAGGACAGAACAACAAGCTGTTGAACTGCTGGGCAAGCAG
CGCGTGTTGTAAAACATTTCAGCAGCAGATACAACAATAGGGCCGGGCGA
TGAGGAGAATGTTCCTGCCTCTGTCCAACCAGAGTATTTGCCTACCCCTG
TATTTACGACAAATGCCATGCTGCGAAAGACGTTGACTGCATTGGCACAC
ATCCCACATACGCAGCGGGTCAAAGAGCGCCGCAGCAACCGCCGTCCCGC
CCGCCCCCCAACGAAACAGGTGCCCCTTCGAACCACGTCGCTGGTCTCGG
ACGCGGTGCCGTGGGTTTCACCAAGTGGTCCGACATCGGTCCCGCCCGCA
CCACTCTCGCCGAGCTCGGGGCCGCCGCCCGCCTGGCGCGACCTGTGCGT
CGTGCGGCGTTTCTAA
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Coding sequence (CDS) from alignment at chr_00:1536748..1537713-

>Ec-00_001270.1 ID=Ec-00_001270.1|Name=Ec-00_001270.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=270bp|location=Sequence derived from alignment at chr_00:1536748..1537713- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGATGCGAGGCTTGGGAAAGAAAACTCCTGCACAACCTACAGCAGT
GACGGTGATGAGATGGAAGGGCCCGTCACAGGCCTCCTCGTCTGGGACTG
CTGTACGTACCAACACTGCTGCGGTGCCCCTTCGAACCACGTCGCTGGTC
TCGGACGCGGTGCCGTGGGTTTCACCAAGTGGTCCGACATCGGTCCCGCC
CGCACCACTCTCGCCGAGCTCGGGGCCGCCGCCCGCCTGGCGCGACCTGT
GCGTCGTGCGGCGTTTCTAA
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Synonyms
The feature 'Ec-00_001270.1' has the following synonyms
Synonym
Esi0013_0074
Esi_0013_0074