Ec-00_001260.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001260.1
Unique NameEc-00_001260.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length53
Homology
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BLAST of Ec-00_001260.1 vs. uniprot
Match: D8LE82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE82_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 9.820e-28
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 MRLEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQKKIP 156
            MRLEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQKKIP
Sbjct:    1 MRLEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQKKIP 52
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BLAST of Ec-00_001260.1 vs. uniprot
Match: A0A7S2USD3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USD3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.810e-9
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   10 EAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQK 147
            EA+RLERR GNSK  ++L  KALQ+CP SG++WAEE   A R +Q+
Sbjct:  166 EAIRLERRHGNSKLAENLTAKALQDCPSSGIIWAEEISCAPRHQQR 211
[Close]
BLAST of Ec-00_001260.1 vs. uniprot
Match: A0A7S3MBI4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBI4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.000e-8
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 LEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQK 147
            LE +RLERRSG+ K  +SLM KAL+ECP SG LWAEE L   +  QK
Sbjct:  222 LECIRLERRSGHEKLAESLMAKALRECPKSGALWAEELLTCAKPLQK 268
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BLAST of Ec-00_001260.1 vs. uniprot
Match: A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.190e-8
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 LEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQK 147
            LE +RLERRSG+ K  +SLM KAL+ECP SG LWAEE L   +  QK
Sbjct:  782 LECIRLERRSGHEKLAESLMAKALRECPKSGALWAEELLTCAKPLQK 828
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BLAST of Ec-00_001260.1 vs. uniprot
Match: K0R5N5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R5N5_THAOC)

HSP 1 Score: 57.8 bits (138), Expect = 2.230e-8
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    7 LEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQK 147
            LEA+RLERR+GN K   SLM +ALQECPGSG L AE  + + R EQK
Sbjct:  814 LEAIRLERRAGNDKLAVSLMARALQECPGSGRLLAENIITSPRVEQK 860
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BLAST of Ec-00_001260.1 vs. uniprot
Match: A0A448ZL49_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZL49_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.170e-8
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 LEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQK 147
            LEA RLERRSGN+K  +SLM +ALQECP SG L AE    A R EQK
Sbjct:  895 LEATRLERRSGNTKLAESLMARALQECPKSGRLLAENIATAPRVEQK 941
[Close]
BLAST of Ec-00_001260.1 vs. uniprot
Match: A0A6V0AK95_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0AK95_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.170e-8
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 LEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQK 147
            LEA RLERRSGN+K  +SLM +ALQECP SG L AE    A R EQK
Sbjct: 1039 LEATRLERRSGNTKLAESLMARALQECPKSGRLLAENIATAPRVEQK 1085
[Close]
BLAST of Ec-00_001260.1 vs. uniprot
Match: A0A7S2EY21_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EY21_TRICV)

HSP 1 Score: 56.6 bits (135), Expect = 5.670e-8
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 LEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQK 147
            +EAVRLERR+GN K   +LM +ALQECP SG+L AE    A R EQK
Sbjct:  403 VEAVRLERRAGNDKLASALMARALQECPSSGLLLAENIATAPRPEQK 449
[Close]
BLAST of Ec-00_001260.1 vs. uniprot
Match: F0YJY9_AURAN (PRP1_N domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJY9_AURAN)

HSP 1 Score: 55.8 bits (133), Expect = 1.070e-7
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    7 LEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQK 147
            L AVRLERR GN K  ++L  KALQECP SG LWA+E  AA R  +K
Sbjct:  796 LAAVRLERRHGNRKLAENLSAKALQECPESGELWADEIFAAPRPARK 842
[Close]
BLAST of Ec-00_001260.1 vs. uniprot
Match: A0A6U1QKH3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1QKH3_CYCTE)

HSP 1 Score: 55.1 bits (131), Expect = 1.610e-7
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 LEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQK 147
            LEA+RLERR+GN K   +LM +ALQECP SG L AE  + A R EQK
Sbjct:   99 LEAIRLERRAGNDKLAVTLMARALQECPTSGKLLAENIMTAPRVEQK 145
The following BLAST results are available for this feature:
BLAST of Ec-00_001260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE82_ECTSI9.820e-28100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2USD3_9STRA5.810e-958.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3MBI4_9STRA1.000e-861.70Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3MCI9_9STRA1.190e-861.70Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
K0R5N5_THAOC2.230e-863.83Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A448ZL49_9STRA4.170e-865.96Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6V0AK95_9STRA4.170e-865.96Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2EY21_TRICV5.670e-861.70Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
F0YJY9_AURAN1.070e-761.70PRP1_N domain-containing protein n=1 Tax=Aureococc... [more]
A0A6U1QKH3_CYCTE1.610e-761.70Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1535157..1535824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length159
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_001260.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001260Ec-00_001260Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1535157..1535824 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001260.1.2Ec-00_001260.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1535157..1535169 -
Ec-00_001260.1.1Ec-00_001260.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1535679..1535824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001260.1CDS:Ec-00_001260.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1535157..1535169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001260.1Ec-00_001260.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1535157..1535824 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001260.1 ID=Ec-00_001260.1|Name=Ec-00_001260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=53bp
MRLEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQKK
IP*
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spliced messenger RNA

>Ec-00_001260.1 ID=Ec-00_001260.1|Name=Ec-00_001260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=159bp|location=Sequence derived from alignment at chr_00:1535157..1535824- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGTTGGAGGCGGTGCGTCTTGAGAGGCGATCAGGGAACAGCAAGGG
TGTGGATAGCCTCATGACCAAGGCCCTGCAGGAGTGTCCCGGGTCCGGCG
TGCTTTGGGCGGAGGAGGCCCTGGCGGCACAACGGTCCGAGCAGAAGAAA
ATCCCTTGA
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protein sequence of Ec-00_001260.1

>Ec-00_001260.1 ID=Ec-00_001260.1|Name=Ec-00_001260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=53bp
MRLEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQKK
IP*
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mRNA from alignment at chr_00:1535157..1535824-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001260.1 ID=Ec-00_001260.1|Name=Ec-00_001260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=668bp|location=Sequence derived from alignment at chr_00:1535157..1535824- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGGTTGGAGGCGGTGCGTCTTGAGAGGCGATCAGGGAACAGCAAGGG
TGTGGATAGCCTCATGACCAAGGCCCTGCAGGAGTGTCCCGGGTCCGGCG
TGCTTTGGGCGGAGGAGGCCCTGGCGGCACAACGGTCCGAGCAGAAGTGA
GAGAGACAGACCGCGATGTAATTTTGAGCAAGAGTAGCAGTGGCATAGCG
TGTGACGCGTGTTGTGTGGTGGGCACTGCGATATGGAGCTACTTGTTTAA
GAAGTGTTATCGGGGGAAATGATGGCGGGAAGAAATATGGGTGGTACAAG
TACAGCAGGCCGAGCCTGAGCAAGCAGTTTTATGGTGTTGTTGTTGTTAC
CGTCGTTGCCGTACGTATCGCATGCGCATCGCCATGAAATCAGGAGCCTT
CTCTGCCCATCACCTGATGTTTCTTCATCATTTGCTTTCGTTGTGAAATC
ATCTTGACGGGCGTATATGACAGACACGCCTCAAAGAAAGCACCATGCGC
GCCCGGAAGTGTTGTGAATACCACATAAATACCAACAACCCAGGCATCCT
ACCGGACTGTCTCCCGAGGTTGGCAATGCACATCATGGACTGCTTTTGCT
GCACCCGTCCCCTTCGCACACGAACTAAACGAAAAACGCCAACAACACCA
AGCAGGAAAATCCCTTGA
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Coding sequence (CDS) from alignment at chr_00:1535157..1535824-

>Ec-00_001260.1 ID=Ec-00_001260.1|Name=Ec-00_001260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=159bp|location=Sequence derived from alignment at chr_00:1535157..1535824- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGGTTGGAGGCGGTGCGTCTTGAGAGGCGATCAGGGAACAGCAAGGG
TGTGGATAGCCTCATGACCAAGGCCCTGCAGGAGTGTCCCGGGTCCGGCG
TGCTTTGGGCGGAGGAGGCCCTGGCGGCACAACGGTCCGAGCAGAAGAAA
ATCCCTTGA
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Synonyms
The feature 'Ec-00_001260.1' has the following synonyms
Synonym
Esi0013_0073
Esi_0013_0073