Ec-00_001250.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001250.1
Unique NameEc-00_001250.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length102
Homology
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BLAST of Ec-00_001250.1 vs. uniprot
Match: D8LE81_ECTSI (Pre-mRNA splicing factor, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE81_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 4.040e-69
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 
Query:    1 MPRPAGGSTAPSRLDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVVVVIPRGPTSTG 303
            MPRPAGGSTAPSRLDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVVVVIPRGPTSTG
Sbjct:    1 MPRPAGGSTAPSRLDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVVVVIPRGPTSTG 101
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BLAST of Ec-00_001250.1 vs. uniprot
Match: A0A6H5KYH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH2_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.250e-34
Identity = 65/87 (74.71%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:   40 LDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVVVVIPRGPTST 300
            LDP MGDAWA +YAFELQQGT+VE+ DVL RCVAA+P+HGELW S+SKT  TE +R DKASIL+KVVAAYFS +G VVVIP GPT T
Sbjct:  382 LDPNMGDAWAAYYAFELQQGTEVEQKDVLDRCVAAEPAHGELWTSVSKT--TENRRLDKASILKKVVAAYFS-DGAVVVIPGGPTGT 465
[Close]
BLAST of Ec-00_001250.1 vs. uniprot
Match: D7FHD2_ECTSI (PRP1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD2_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 7.030e-34
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:   40 LDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVVVVIPRGPTST 300
            LDP MGDAWA +YAFELQQGT+VE+ DVL RCVAA+P+HGELW S+SKT  TE +R DKASIL+KVVAAYFS +G VVVIP GPTST
Sbjct:  743 LDPNMGDAWAAYYAFELQQGTEVEQKDVLDRCVAAEPAHGELWTSVSKT--TENRRLDKASILKKVVAAYFS-DGAVVVIPGGPTST 826
[Close]
BLAST of Ec-00_001250.1 vs. uniprot
Match: A0A835YM25_9STRA (PRP1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM25_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.050e-19
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:   40 LDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFS 255
            LD   GDAWA  +AFELQQGT  ++ DV+ RCV A+PSHGELW S+SK   T  QR D+ ++LRKVVA YF+
Sbjct:  743 LDADNGDAWAAFFAFELQQGTAEQQADVIARCVKAEPSHGELWCSVSKK--TGNQRLDRETVLRKVVAQYFA 812
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BLAST of Ec-00_001250.1 vs. uniprot
Match: A0A7S2USD3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USD3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 7.830e-16
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   40 LDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAA 246
            LDP +GDAWA+ YAFELQ G   ++ ++L RCVAA+P+HGELW   SK   TE +R +  +IL+KVVAA
Sbjct:  254 LDPDLGDAWALFYAFELQHGKKEDQEELLKRCVAAEPTHGELWCGTSKK--TENRRCNTETILKKVVAA 320
[Close]
BLAST of Ec-00_001250.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.000e-14
Identity = 33/68 (48.53%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:   40 LDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVA 243
            L+P +GD+WA +YAFEL+ G++ ++++VL +C+ ADP+HG +W ++SK+   E  R  K SIL+KVVA
Sbjct:  866 LNPDLGDSWAYYYAFELRHGSETDKSEVLKKCLEADPTHGGIWTAVSKS--VENWRVSKESILKKVVA 931
[Close]
BLAST of Ec-00_001250.1 vs. uniprot
Match: A0A061ET01_THECC (Pre-mRNA splicing factor-related n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A061ET01_THECC)

HSP 1 Score: 72.0 bits (175), Expect = 3.830e-14
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   40 LDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAA 246
            L P +GD WA++Y FELQ+G++  + DV+ RCVAA+P HGE W++ISK    E       +IL+KVV A
Sbjct:   36 LAPDIGDFWALYYKFELQRGSEENQKDVMKRCVAAEPKHGEKWQAISKA--VENSHQPTEAILKKVVVA 102
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BLAST of Ec-00_001250.1 vs. uniprot
Match: A0A0A0KDS6_CUCSA (Ubiquitin-like domain-containing protein n=9 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0KDS6_CUCSA)

HSP 1 Score: 75.5 bits (184), Expect = 9.500e-14
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   40 LDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVV 270
            L P +GD WA++Y FELQ G D  + DVL RC+AA+P HGE W++ISK    E       SIL+KVV A     G V
Sbjct:  944 LAPDVGDFWALYYKFELQHGGDENQKDVLKRCIAAEPKHGEKWQTISKA--VENSHQPTESILKKVVVALGKEEGAV 1018
[Close]
BLAST of Ec-00_001250.1 vs. uniprot
Match: F0YJY9_AURAN (PRP1_N domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJY9_AURAN)

HSP 1 Score: 75.1 bits (183), Expect = 1.290e-13
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:   40 LDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVA 243
            LDP +GDAWA +YAFEL  G + ++ DVL RCVAA+P+HGELW SISK       R D A+ LR   A
Sbjct:  885 LDPDLGDAWAHYYAFELADGVESDQEDVLQRCVAAEPAHGELWTSISKDPA--HARADVAAKLRLAAA 950
[Close]
BLAST of Ec-00_001250.1 vs. uniprot
Match: A0A6J5VMC1_PRUAR (Uncharacterized protein n=1 Tax=Prunus armeniaca TaxID=36596 RepID=A0A6J5VMC1_PRUAR)

HSP 1 Score: 74.7 bits (182), Expect = 1.570e-13
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:   40 LDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAA 246
            L P +GD WA++Y FELQ GT+  + DVL RCVAA P HGE W+ ISK      Q  +  +IL+KVVAA
Sbjct:  364 LAPDIGDFWALYYKFELQHGTEENQKDVLNRCVAAGPKHGEKWQPISKAVENSHQPIE--AILKKVVAA 430
The following BLAST results are available for this feature:
BLAST of Ec-00_001250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE81_ECTSI4.040e-69100.00Pre-mRNA splicing factor, putative n=1 Tax=Ectocar... [more]
A0A6H5KYH2_9PHAE4.250e-3474.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD2_ECTSI7.030e-3475.86PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YM25_9STRA5.050e-1959.72PRP1_N domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S2USD3_9STRA7.830e-1656.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D6Q2_9STRA2.000e-1448.53Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A061ET01_THECC3.830e-1449.28Pre-mRNA splicing factor-related n=2 Tax=Pentapeta... [more]
A0A0A0KDS6_CUCSA9.500e-1449.35Ubiquitin-like domain-containing protein n=9 Tax=C... [more]
F0YJY9_AURAN1.290e-1355.88PRP1_N domain-containing protein n=1 Tax=Aureococc... [more]
A0A6J5VMC1_PRUAR1.570e-1353.62Uncharacterized protein n=1 Tax=Prunus armeniaca T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1534213..1535082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.9
Seed ortholog evalue5.5e-52
Seed eggNOG ortholog2880.D8LE81
Length306
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
Gene idEc-00_001250.1
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsKOG0495@1,KOG0495@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001250Ec-00_001250Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1533522..1539328 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001250.1.2Ec-00_001250.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1534213..1534387 -
Ec-00_001250.1.1Ec-00_001250.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1534952..1535082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001250.1CDS:Ec-00_001250.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1534213..1534387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001250.1Ec-00_001250.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1534213..1535082 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001250.1 ID=Ec-00_001250.1|Name=Ec-00_001250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=102bp
MPRPAGGSTAPSRLDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADP
SHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVVVVIPRGPTST
G*
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spliced messenger RNA

>Ec-00_001250.1 ID=Ec-00_001250.1|Name=Ec-00_001250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=306bp|location=Sequence derived from alignment at chr_00:1534213..1535082- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAGACCCGCAGGTGGTTCAACCGCGCCATCACGTCTGGACCCTTA
CATGGGCGACGCGTGGGCGGTGCACTACGCCTTCGAGCTGCAGCAGGGGA
CCGACGTTGAGCGAACGGACGTTCTCGGCAGGTGTGTGGCGGCCGATCCT
TCCCACGGGGAGCTGTGGAAGTCAATATCCAAGACAAACACCACCGAAAA
ACAGCGGTTCGACAAGGCCAGCATCCTCAGGAAGGTCGTAGCCGCCTACT
TTTCCGGCAACGGTGTAGTGGTCGTCATTCCACGAGGCCCAACAAGCACT
GGCTAG
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protein sequence of Ec-00_001250.1

>Ec-00_001250.1 ID=Ec-00_001250.1|Name=Ec-00_001250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=102bp
MPRPAGGSTAPSRLDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADP
SHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVVVVIPRGPTST
G*
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mRNA from alignment at chr_00:1534213..1535082-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001250.1 ID=Ec-00_001250.1|Name=Ec-00_001250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=870bp|location=Sequence derived from alignment at chr_00:1534213..1535082- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCAAGACCCGCAGGTGGTTCAACCGCGCCATCACGTCTGGACCCTTA
CATGGGCGACGCGTGGGCGGTGCACTACGCCTTCGAGCTGCAGCAGGGGA
CCGACGTTGAGCGAACGGACGTTCTCGGCAGGTTCGTCCACTACACAGCT
TAGTTTTTTGTTTTGTTTTTCTCCCCTTCGTCGAATCGACACGCACGACG
TGTTGTTTTCGTTGTGTGGGGTAAGGTCTGGTCAATAGGCTGGGAGGTAT
TTGCATTGTTATTCTTGTTGTCCTGCTACATATTGCTGTCGGTTCCAAGA
AGCCTGTTCTCGGTTGCACTTTGGTTTCATTTGGGCGAGGGTGCAGTGAT
TCGGCAAAGAATGTCCACCCTCTTCACTCCTTTGAAGATATTGCGCTTGA
AGATATTGCCCATCAACATTCATAATCGGAGACTGTGATGCCGGTGAAGC
CAGATTGATGCACTCAGCGGTATGGCCTACGACACTTCTAGATACGATTC
GAAAACTAGCCACTACTGCTATACACCCTGCACCGTATCCGTGGCCATCT
TTTGAATAACTAGATCCCGGAAGCACACCAACATCTGATGATCCCTAAGG
TGTACAAGTGTTTTTGTGGTACAGCAGTATGGTGATGATATATCATGTGA
GGGTGGTGATACGTGACCTAACTTTGGACGCCGAAACCGCGACAGGTGTG
TGGCGGCCGATCCTTCCCACGGGGAGCTGTGGAAGTCAATATCCAAGACA
AACACCACCGAAAAACAGCGGTTCGACAAGGCCAGCATCCTCAGGAAGGT
CGTAGCCGCCTACTTTTCCGGCAACGGTGTAGTGGTCGTCATTCCACGAG
GCCCAACAAGCACTGGCTAG
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Coding sequence (CDS) from alignment at chr_00:1534213..1535082-

>Ec-00_001250.1 ID=Ec-00_001250.1|Name=Ec-00_001250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=306bp|location=Sequence derived from alignment at chr_00:1534213..1535082- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCAAGACCCGCAGGTGGTTCAACCGCGCCATCACGTCTGGACCCTTA
CATGGGCGACGCGTGGGCGGTGCACTACGCCTTCGAGCTGCAGCAGGGGA
CCGACGTTGAGCGAACGGACGTTCTCGGCAGGTGTGTGGCGGCCGATCCT
TCCCACGGGGAGCTGTGGAAGTCAATATCCAAGACAAACACCACCGAAAA
ACAGCGGTTCGACAAGGCCAGCATCCTCAGGAAGGTCGTAGCCGCCTACT
TTTCCGGCAACGGTGTAGTGGTCGTCATTCCACGAGGCCCAACAAGCACT
GGCTAG
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Synonyms
The feature 'Ec-00_001250.1' has the following synonyms
Synonym
Esi0013_0072
Esi_0013_0072