Ec-00_001240.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001240.1
Unique NameEc-00_001240.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length101
Homology
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BLAST of Ec-00_001240.1 vs. uniprot
Match: D8LE80_ECTSI (60S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE80_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.770e-44
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:  481 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRMXXXXXXXXXXXQRAR 780
            MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKR XXXXXXXXXX QRAR
Sbjct:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
[Close]
BLAST of Ec-00_001240.1 vs. uniprot
Match: A0A836CFJ6_9STRA (60S ribosomal protein L41 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFJ6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.110e-20
Identity = 70/101 (69.31%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:  481 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGC-LADAGIEEADTLTLLLDVRGGMRAKWRKKRMXXXXXXXXXXXQRAR 780
            MQIFVKTL   SL L+V+P +++  V A VE +EFLPAAL RL+ G+ QL+S   L  AGIEEADTLTLLL V GGMRAKWRKKR XXXXXXXXXX QRAR
Sbjct:    1 MQIFVKTLARDSLVLDVAPTSTVGDVMAMVEDREFLPAALQRLSCGSTQLASTTTLEAAGIEEADTLTLLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
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BLAST of Ec-00_001240.1 vs. uniprot
Match: A0A6A4FFT9_9STRA (60S ribosomal protein L41 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FFT9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.840e-15
Identity = 64/107 (59.81%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:  460 LSIREANMQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRMXXXXXXXXXXXQRAR 780
            LSI+E  MQ+FV+TL G+ L L V+   S+ +VK AVE  E++P    RL     QL+SG LAD  + E DTL +LLDV GGMRAKWRKKR XXXXXXXXXX QRAR
Sbjct:  824 LSIQEGRMQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIPN--FRLVCAGKQLTSGSLADYAVGECDTLKMLLDVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 928
[Close]
BLAST of Ec-00_001240.1 vs. uniprot
Match: A0A7S4T8Y9_9STRA (60S ribosomal protein L41 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T8Y9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.270e-15
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:  478 NMQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRMXXXXXXXXXXXQRAR 780
            NMQIF+    G S    V    SI +VKA +E +EF+PA L+RL +G + L  G L   G++E DT+T+LL+V GGMRAKWRKKR XXXXXXXXXX QRAR
Sbjct:   88 NMQIFIAGAQGPSTAYTVDSDASIESVKAMIENKEFVPADLIRLVNGASVLEGGSLLGNGVQEDDTITMLLEVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 188
[Close]
BLAST of Ec-00_001240.1 vs. uniprot
Match: A0A7R9WJP8_9STRA (60S ribosomal protein L41 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WJP8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 9.480e-15
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:  478 NMQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRMXXXXXXXXXXXQRAR 780
            NMQIF+      S    V  A SI +VKA +E +EF+PA L+RL +G   L  G LA  G+E+ DT+T++L+V+GGMR KW+KKRMXXXXXXXXXX QRAR
Sbjct:   24 NMQIFI-----GSTAYAVDAADSIESVKAQIENREFVPAHLIRLVNGATPLEGGTLAGNGVEDEDTITMMLEVQGGMRRKWKKKRMXXXXXXXXXXRQRAR 119
[Close]
BLAST of Ec-00_001240.1 vs. uniprot
Match: A0A6G0NVC9_9STRA (60S ribosomal protein L41 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NVC9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.240e-14
Identity = 64/107 (59.81%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:  460 LSIREANMQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRMXXXXXXXXXXXQRAR 780
            LSI+E  MQ+FV+TL G+ L L V+   S+ +VK AVE  E++P    RL     QL+SG LAD  + E DTL +LLDV GGMRAKWRKKR XXXXXXXXXX QRAR
Sbjct:  703 LSIQEGRMQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIPN--FRLVCAGKQLTSGSLADYVVGECDTLKMLLDVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 807
[Close]
BLAST of Ec-00_001240.1 vs. uniprot
Match: A0A7S4DB66_HETAK (60S ribosomal protein L41 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB66_HETAK)

HSP 1 Score: 79.7 bits (195), Expect = 1.440e-14
Identity = 59/100 (59.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:  481 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRMXXXXXXXXXXXQRAR 780
            MQIFVK   G S    VS   S+    A VE Q FLPA L+R    + QL++G LAD G+EE  T+++LL V GGMRAKWRKKR XXXXXXXXXX QRAR
Sbjct:    1 MQIFVKDPSGRSTAYTVSKDASVEGFNAQVENQTFLPADLVRFVCESKQLTTGSLADFGVEEGVTISMLLHVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
[Close]
BLAST of Ec-00_001240.1 vs. uniprot
Match: A0A7S2HF29_9STRA (60S ribosomal protein L41 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HF29_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.440e-14
Identity = 55/100 (55.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:  481 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRMXXXXXXXXXXXQRAR 780
            MQIF+    G S    V    S+ +VKA +E +EF+P+ L+RL +G   L  G L   G++E DT+T+LL+V GGMRAKWRKKR XXXXXXXXXX QRAR
Sbjct:    1 MQIFIAGAQGPSTAYTVDSDASVESVKAMIENREFVPSELIRLVNGATALEGGSLLGNGVQEDDTITMLLEVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
[Close]
BLAST of Ec-00_001240.1 vs. uniprot
Match: A0A6U6FD30_9STRA (60S ribosomal protein L41 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6FD30_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.620e-14
Identity = 58/103 (56.31%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:  472 EANMQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRMXXXXXXXXXXXQRAR 780
            ++NMQIF+      S    V  A SI +VKA +E +EF+PA L+RL +G   L  G LA  GIEE DTLT++L+V+GGMR KW+KK  XXXXXXXXXX QRAR
Sbjct:   14 QSNMQIFI-----GSSAYTVDSADSIESVKAQIENKEFVPANLIRLVNGATPLEGGSLAGNGIEEDDTLTMMLEVQGGMRKKWKKKXXXXXXXXXXXXRQRAR 111
[Close]
BLAST of Ec-00_001240.1 vs. uniprot
Match: A0A7S3Y2M4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2M4_HETAK)

HSP 1 Score: 79.7 bits (195), Expect = 3.780e-14
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:  481 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRM 735
            MQIFVK   G S    VS   S+    A VE Q FLPA L+R    + QL++G LAD G+EE  T+++LL V GGMRAKWRKKRM
Sbjct:    1 MQIFVKDPSGRSTAYTVSKDASVEGFNAQVENQTFLPADLVRFVCESKQLTTGSLADFGVEEGVTISMLLHVNGGMRAKWRKKRM 85
The following BLAST results are available for this feature:
BLAST of Ec-00_001240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE80_ECTSI1.770e-4498.0060S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID... [more]
A0A836CFJ6_9STRA1.110e-2069.3160S ribosomal protein L41 n=1 Tax=Tribonema minus ... [more]
A0A6A4FFT9_9STRA5.840e-1559.8160S ribosomal protein L41 n=9 Tax=Phytophthora Tax... [more]
A0A7S4T8Y9_9STRA8.270e-1557.4360S ribosomal protein L41 n=3 Tax=Ditylum brightwe... [more]
A0A7R9WJP8_9STRA9.480e-1556.4460S ribosomal protein L41 n=1 Tax=Pseudictyota dub... [more]
A0A6G0NVC9_9STRA1.240e-1459.8160S ribosomal protein L41 n=1 Tax=Phytophthora fra... [more]
A0A7S4DB66_HETAK1.440e-1459.0060S ribosomal protein L41 n=1 Tax=Heterosigma akas... [more]
A0A7S2HF29_9STRA1.440e-1455.0060S ribosomal protein L41 n=1 Tax=Helicotheca tame... [more]
A0A6U6FD30_9STRA3.620e-1456.3160S ribosomal protein L41 n=1 Tax=Odontella aurita... [more]
A0A7S3Y2M4_HETAK3.780e-1454.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1530348..1532753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue3.4e-38
Seed eggNOG ortholog2880.D8LE80
Preferred nameUBB
Length1592
KEGG koko:K02927,ko:K02977,ko:K04551,ko:K08770
KEGG Pathwayko03010,ko03320,ko04137,ko04144,ko05012,ko05167,map03010,map03320,map04137,map04144,map05012,map05167
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
Gene idEc-00_001240.1
GOsGO:0000122,GO:0000165,GO:0000187,GO:0000209,GO:0000715,GO:0000731,GO:0000902,GO:0001666,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002755,GO:0002756,GO:0002757,GO:0002758,GO:0002764,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005783,GO:0005789,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006294,GO:0006296,GO:0006297,GO:0006301,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006605,GO:0006625,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007017,GO:0007018,GO:0007031,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007249,GO:0007254,GO:0007267,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009628,GO:0009653,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010008,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010942,GO:0010970,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016055,GO:0016192,GO:0016197,GO:0016310,GO:0016567,GO:0016579,GO:0017015,GO:0018130,GO:0019058,GO:0019068,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019438,GO:0019538,GO:0019867,GO:0019941,GO:0019985,GO:0022008,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030139,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030512,GO:0030522,GO:0030659,GO:0030666,GO:0030705,GO:0031090,GO:0031098,GO:0031145,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031347,GO:0031349,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033036,GO:0033365,GO:0033554,GO:0033674,GO:0033683,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0034643,GO:0034645,GO:0034654,GO:0035556,GO:0035666,GO:0035872,GO:0036211,GO:0036293,GO:0036294,GO:0036297,GO:0036477,GO:0042175,GO:0042176,GO:0042221,GO:0042276,GO:0042325,GO:0042327,GO:0042391,GO:0042769,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043487,GO:0043488,GO:0043549,GO:0043574,GO:0043618,GO:0043620,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044297,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044766,GO:0045088,GO:0045089,GO:0045184,GO:0045859,GO:0045860,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0046794,GO:0046907,GO:0047497,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051603,GO:0051606,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051654,GO:0051656,GO:0051704,GO:0051716,GO:0051881,GO:0055085,GO:0060255,GO:0060548,GO:0061013,GO:0061024,GO:0061136,GO:0061418,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070423,GO:0070482,GO:0070498,GO:0070555,GO:0070646,GO:0070647,GO:0070727,GO:0070848,GO:0070887,GO:0070911,GO:0070987,GO:0071310,GO:0071345,GO:0071347,GO:0071363,GO:0071453,GO:0071456,GO:0071495,GO:0071559,GO:0071560,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071900,GO:0071902,GO:0071944,GO:0072384,GO:0072594,GO:0072662,GO:0072663,GO:0075733,GO:0080090,GO:0080134,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0090305,GO:0097458,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099111,GO:0120025,GO:0120036,GO:0120039,GO:0198738,GO:1901214,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1902253,GO:1902255,GO:1902525,GO:1902527,GO:1902531,GO:1902533,GO:1902579,GO:1902679,GO:1902680,GO:1903050,GO:1903311,GO:1903320,GO:1903322,GO:1903362,GO:1903506,GO:1903507,GO:1903508,GO:1903844,GO:1903845,GO:1905114,GO:2000112,GO:2000113,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0001@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001240Ec-00_001240Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1530348..1532753 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001240.1.1Ec-00_001240.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1530348..1530803 +
Ec-00_001240.1.2Ec-00_001240.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1531618..1532753 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0012405UTR:Ec-00_001240.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1530348..1530803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001240.1CDS:Ec-00_001240.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1531644..1531946 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0012403UTR:Ec-00_001240.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1531947..1532753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001240.1Ec-00_001240.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1531644..1531946 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001240.1 ID=Ec-00_001240.1|Name=Ec-00_001240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=101bp
MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQL
SSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRMRRLRRKRRKMRQRAR
*
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spliced messenger RNA

>Ec-00_001240.1 ID=Ec-00_001240.1|Name=Ec-00_001240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1592bp|location=Sequence derived from alignment at chr_00:1530348..1532753+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GGTGCTCCTGCTGGCGCTGTGCTCCTCATTCTCGCTGACTGCTCAAGCTC
TGCAAGGGTGAGTTCTAGCCCGCGACCCTCCTCACGAGGGCGTGCGTGGC
GCGGCCGGTGTTGCCGCCTGCAGAGGCAGTCATTTGTAGATGTATCTATG
TATTTCTTGCTGTTCCGGACTCTCGATTTTTGTTGCTCCATCCCTCTGCC
TGACACACACCACAAAAATATCTCCTGCTCGATTGCGGCTGGCGTCAGCT
GCTGAGGCATCTAGCTGCATGCATATACGATCTACTGCAATATCTAGTTG
GGGTGGATGTCCATTTGCTTCTTCTTGCCTGTGTTTTGTTTGTCTGGGGT
GTGGTGGTGTCAGTGTTGGCGTTCGTGTTCGGAGGGGCAACCTACACCAA
TAGTCCAGGCACAGCAGCCACCGAAAACTCAACCACCAGACATCCACACG
AAGCAGGCTTTTTGAGCATCCGGGAAGCAAATATGCAGATCTTCGTCAAG
ACCCTCGGCGGGGCCAGCCTCCCCCTGGAGGTGTCCCCCGCCACCTCCAT
CACGGCCGTCAAGGCCGCGGTGGAGGCGCAGGAGTTCCTCCCCGCCGCCC
TCATGCGCCTCAACCACGGCAACGCCCAGCTCAGCTCGGGCTGCCTGGCT
GACGCCGGCATCGAGGAGGCCGACACCCTGACCCTTCTCCTGGACGTCAG
GGGCGGCATGCGCGCTAAGTGGCGCAAGAAGCGCATGCGCCGCCTCAGGC
GCAAGCGCCGCAAGATGCGCCAGCGCGCGCGTTAAGCGCCACACGTGTAG
GAGCACATGCGGTGGTGGAGAGGAGATGGGCTAATGCTGTCGTCGTTCTT
AGGAAATGGAGGAGGCGTTCGCTTTGTTTTCCTTCCCCACCGCGTCTGTT
GTGTGCGTGCGTGCGCGGGGGAGCCTGGGCTTGTTGACATGTTTCAACGT
GTGGTTTGGCCGGCATAGCGTAGTTGGGCGACTTGGTTGAGCCGTGTGCT
TTTGTTTCGTCTGCTGTCCCCCTTCAGGACGCAGTGGGTTGATGAAATGA
TCAATCACGGTGTCGAGAGAGGCTGATTGTGTTGTGTCCGAAATGCCGCC
GATGTTGATGTGTCTGCTCGCGGGCATCTCTTGGTTGCGTTTTCCGGCCG
TGTTCGGAGGCGTGTCCTTATCTGAGTTGTAAGGGGAGGCGATCTGCGGA
CGTTTCACACCGAGTTTCGCACGGTGGTTTTTTGCTTGCGTTGGTGTCGT
CGCGAGACTTCACTGCTGTCTAGAAGAAAATATCGTCGCGAACTATCTCC
TTGCGTTTCTTGTTTTCGTCCAATCGTATCGCGTCCTCGCACGACGGTGC
GTGTGTTGGTACGATGGCCCTCACGGTGCTGCTTGATGCGGGCGCCTTTT
CCCCGCTTGCTGCCATGCATTCGCCAGATGAACCATGTATGAGGGTACCG
TGTGCTGCCACAGCTGAAATGCATGCTGTGCACCGCATAACAAGTTGCGA
AACATCGTGTTGCGTGATGTTCAGGGTTAACATCCTCCCGACGAGTCTGT
ACTGCAAATTTGCATACAGCAGTAGCGCTCGTGTGGCAAACA
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protein sequence of Ec-00_001240.1

>Ec-00_001240.1 ID=Ec-00_001240.1|Name=Ec-00_001240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=101bp
MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQL
SSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRMRRLRRKRRKMRQRAR
*
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mRNA from alignment at chr_00:1530348..1532753+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001240.1 ID=Ec-00_001240.1|Name=Ec-00_001240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2406bp|location=Sequence derived from alignment at chr_00:1530348..1532753+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GGTGCTCCTGCTGGCGCTGTGCTCCTCATTCTCGCTGACTGCTCAAGCTC
TGCAAGGGTGAGTTCTAGCCCGCGACCCTCCTCACGAGGGCGTGCGTGGC
GCGGCCGGTGTTGCCGCCTGCAGAGGCAGTCATTTGTAGATGTATCTATG
TATTTCTTGCTGTTCCGGACTCTCGATTTTTGTTGCTCCATCCCTCTGCC
TGACACACACCACAAAAATATCTCCTGCTCGATTGCGGCTGGCGTCAGCT
GCTGAGGCATCTAGCTGCATGCATATACGATCTACTGCAATATCTAGTTG
GGGTGGATGTCCATTTGCTTCTTCTTGCCTGTGTTTTGTTTGTCTGGGGT
GTGGTGGTGTCAGTGTTGGCGTTCGTGTTCGGAGGGGCAACCTACACCAA
TAGTCCAGGCACAGCAGCCACCGAAAACTCAACCACCAGACATCCACACG
AAGCAGGTTTCACGTCGTCTCCCCAACTTGCAGTCCATGAGCCTTCCCCC
AGCCAAGAGGTTACTCTTGATTTGAATGATAGAAGTACACCAGTGCGAAG
AGGTTTACCTTGGTGCGATGGTAACACGCTCTCCGTTTTTCGCTTTCTCT
CTATAGGGGAAACGAAGAGGGCCCTCGCTAGATCCACCCGAAATGTCAGA
AACACAATCATGACGATGTATACCACCCCCCCCCCCTCCCCAAGAGCTAG
ATTTGAATTTGCCAGCCACAACACGGCCGCACAATGAAGAGGCATGTTGC
TTTCGTAGCCTCACGGTGCCTTGGAAAATCGTGCAGCAGTATGGTAGGGA
GATCGAGCATGACCCGAACCTGAGAAGAATGGCGCCAGCTCGCTTGAATG
CAACTTTGAAGACCTGTCGCAGTTTTGTTTACCCAGAGAACCGCAGTAGT
ACATACTGCGAGTTTGTGTAATGTGTCGACCGGATTGGGGCTCACAAAGC
GCTCCCAAGTGCCATTAGTGGCCCGCCCTTGATGTCCACCAAAGTGGGTT
GTTCTTGTCCAAAATTCCCCCTTGCCTCAGGTTCTGTCAAAGCACTACCT
TAGTAGTGCTGCCCGTCCGAACCTGTGGATGAATCACACACAACTAGGAC
CGAGGCCTCCCTTCGCTCTCGTTTGCTGTCGCATCGAAAGAAACGTAATA
TTGTATCCGCAATATGTTGATCGCTTTTGAGTACAGCCCTTCCTGTTTCC
GCCCCAGGACTCAACGCACCCCCGACCCTCTCATCTCACCCCTTGCCTGT
CGCGTGTATTTCATCCCCAGGCTTTTTGAGCATCCGGGAAGCAAATATGC
AGATCTTCGTCAAGACCCTCGGCGGGGCCAGCCTCCCCCTGGAGGTGTCC
CCCGCCACCTCCATCACGGCCGTCAAGGCCGCGGTGGAGGCGCAGGAGTT
CCTCCCCGCCGCCCTCATGCGCCTCAACCACGGCAACGCCCAGCTCAGCT
CGGGCTGCCTGGCTGACGCCGGCATCGAGGAGGCCGACACCCTGACCCTT
CTCCTGGACGTCAGGGGCGGCATGCGCGCTAAGTGGCGCAAGAAGCGCAT
GCGCCGCCTCAGGCGCAAGCGCCGCAAGATGCGCCAGCGCGCGCGTTAAG
CGCCACACGTGTAGGAGCACATGCGGTGGTGGAGAGGAGATGGGCTAATG
CTGTCGTCGTTCTTAGGAAATGGAGGAGGCGTTCGCTTTGTTTTCCTTCC
CCACCGCGTCTGTTGTGTGCGTGCGTGCGCGGGGGAGCCTGGGCTTGTTG
ACATGTTTCAACGTGTGGTTTGGCCGGCATAGCGTAGTTGGGCGACTTGG
TTGAGCCGTGTGCTTTTGTTTCGTCTGCTGTCCCCCTTCAGGACGCAGTG
GGTTGATGAAATGATCAATCACGGTGTCGAGAGAGGCTGATTGTGTTGTG
TCCGAAATGCCGCCGATGTTGATGTGTCTGCTCGCGGGCATCTCTTGGTT
GCGTTTTCCGGCCGTGTTCGGAGGCGTGTCCTTATCTGAGTTGTAAGGGG
AGGCGATCTGCGGACGTTTCACACCGAGTTTCGCACGGTGGTTTTTTGCT
TGCGTTGGTGTCGTCGCGAGACTTCACTGCTGTCTAGAAGAAAATATCGT
CGCGAACTATCTCCTTGCGTTTCTTGTTTTCGTCCAATCGTATCGCGTCC
TCGCACGACGGTGCGTGTGTTGGTACGATGGCCCTCACGGTGCTGCTTGA
TGCGGGCGCCTTTTCCCCGCTTGCTGCCATGCATTCGCCAGATGAACCAT
GTATGAGGGTACCGTGTGCTGCCACAGCTGAAATGCATGCTGTGCACCGC
ATAACAAGTTGCGAAACATCGTGTTGCGTGATGTTCAGGGTTAACATCCT
CCCGACGAGTCTGTACTGCAAATTTGCATACAGCAGTAGCGCTCGTGTGG
CAAACA
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Coding sequence (CDS) from alignment at chr_00:1530348..1532753+

>Ec-00_001240.1 ID=Ec-00_001240.1|Name=Ec-00_001240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=303bp|location=Sequence derived from alignment at chr_00:1530348..1532753+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGATCTTCGTCAAGACCCTCGGCGGGGCCAGCCTCCCCCTGGAGGT
GTCCCCCGCCACCTCCATCACGGCCGTCAAGGCCGCGGTGGAGGCGCAGG
AGTTCCTCCCCGCCGCCCTCATGCGCCTCAACCACGGCAACGCCCAGCTC
AGCTCGGGCTGCCTGGCTGACGCCGGCATCGAGGAGGCCGACACCCTGAC
CCTTCTCCTGGACGTCAGGGGCGGCATGCGCGCTAAGTGGCGCAAGAAGC
GCATGCGCCGCCTCAGGCGCAAGCGCCGCAAGATGCGCCAGCGCGCGCGT
TAA
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Synonyms
The feature 'Ec-00_001240.1' has the following synonyms
Synonym
Esi0013_0071
Esi_0013_0071