Ec-00_001170.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001170.2
Unique NameEc-00_001170.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length212
Homology
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BLAST of Ec-00_001170.2 vs. uniprot
Match: D8LE73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE73_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 6.200e-45
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:  465 MEELSGVIEKADSVLLVGHGNAKSNIAEVLASALCERQPGLTDKIEDVLRVDGKHITQNQLLKLGRRHLTHTEDPRRPT 701
            MEELSGVIEKADSVLLVGHGNAKSNIAEVLASALCERQPGLTDKIEDVLRVDGKHITQNQLLKLGRRHLTHTEDPRRPT
Sbjct:    1 MEELSGVIEKADSVLLVGHGNAKSNIAEVLASALCERQPGLTDKIEDVLRVDGKHITQNQLLKLGRRHLTHTEDPRRPT 79
The following BLAST results are available for this feature:
BLAST of Ec-00_001170.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE73_ECTSI6.200e-45100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1459889..1464588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1095
Hectar predicted targeting categorychloroplast
Gene idEc-00_001170.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001170Ec-00_001170Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1459889..1464588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001170.2Ec-00_001170.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1460279..1464519 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001170.2.7Ec-00_001170.2.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1459889..1460392 -
Ec-00_001170.2.6Ec-00_001170.2.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1460999..1461076 -
Ec-00_001170.2.5Ec-00_001170.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1461453..1461542 -
Ec-00_001170.2.4Ec-00_001170.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1462181..1462280 -
Ec-00_001170.2.3Ec-00_001170.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1462866..1462942 -
Ec-00_001170.2.2Ec-00_001170.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1463978..1464066 -
Ec-00_001170.2.1Ec-00_001170.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1464432..1464588 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0011703UTR:Ec-00_001170.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1459889..1460278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001170.2CDS:Ec-00_001170.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1460279..1460392 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0011705UTR:Ec-00_001170.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1464520..1464588 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001170.2 ID=Ec-00_001170.2|Name=Ec-00_001170.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=212bp
MMLTQAVVLVLGCSISHAFVLPLVGSRNAVASIGGNLAPQRAPVPLRQQQ
EAAVNAAETAPEGSLVLIEVTKKHAKVFKSVAKGSVPEVVEPIDEWRVHE
TSNREKRSQGQGKHHAEKTDPVAEEAYLVKFYMEELSGVIEKADSVLLVG
HGNAKSNIAEVLASALCERQPGLTDKIEDVLRVDGKHITQNQLLKLGRRH
LTHTEDPRRPT*
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spliced messenger RNA

>Ec-00_001170.2 ID=Ec-00_001170.2|Name=Ec-00_001170.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1095bp|location=Sequence derived from alignment at chr_00:1459889..1464588- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CCAAGCGGGCTGCAATTCAAGAGCAAGGCGCGTGCTCTTGGGCACAATAC
GTCCTAGATTTGAACGACAATGATGCTCACGCAGGCAGTGGTGCTGGTGC
TCGGGTGTAGTATATCCCATGCGTTCGTCCTGCCTCTGGTCGGCAGCCGG
AATGCAGTAGCATCCATTGGAGGGAACCTTGCACCACAACGCGCCCCTGT
GCCTCTCCGTCAGCAGCAAGAAGCGGCAGTAAATGCGGCCGAAACGGCGC
CAGAGGGATCCCTGGTATTGATCGAGGTGACGAAGAAGCACGCCAAGGTC
TTCAAATCAGTCGCCAAGGGCAGCGTGCCTGAAGTTGTGGAGCCGATTGA
CGAATGGAGGGTACATGAGACAAGCAATAGGGAGAAGAGGAGCCAGGGGC
AGGGCAAGCACCACGCAGAAAAGACGGACCCGGTGGCAGAAGAGGCGTAC
CTCGTCAAGTTTTATATGGAGGAGCTGTCCGGGGTGATCGAGAAGGCCGA
TTCAGTGCTTCTGGTCGGTCACGGCAACGCAAAATCCAACATCGCCGAGG
TTCTAGCATCGGCTCTCTGCGAACGCCAGCCTGGTTTGACGGATAAGATC
GAAGATGTTCTACGGGTGGATGGCAAGCACATCACGCAGAACCAGCTCTT
GAAGCTGGGCAGGAGGCATCTTACCCACACCGAGGACCCTAGGAGGCCGA
CCTAAACCAGCTTCACACCGTCAAGAGAGCTTCACACCGTCAAGAGAGCA
CAACCCGCGGGTGTAGCTTATTTGTCCGATCCTAAGGCAATACCCGCAAT
GTGAAGAACAAGTCTGCTTTCTTCAGAAATTGCGCCTAAGGTCAATAGAC
GTCAAGCAAGTGTTGGAAATGCACAGCGGCACGAAATTGAGCCACCACTA
TCCTCGGCAGCGTTAGTTGCGGTGTGTAGGGGGGTGAGTTTCACTATGAA
GTTGTTCTCTCGGCGGTTGAATGTAACGATTATGATGAGTCCCTGTGGGA
GAAGAATCTTGGGCGGGGGGGGGGTTGGGAAGAAGGTTGAATCAACATCA
TTTGTGTGAACCGTGACTCTGTGCGACCTCTAAACTACAGTAGTT
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protein sequence of Ec-00_001170.2

>Ec-00_001170.2 ID=Ec-00_001170.2|Name=Ec-00_001170.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=212bp
MMLTQAVVLVLGCSISHAFVLPLVGSRNAVASIGGNLAPQRAPVPLRQQQ
EAAVNAAETAPEGSLVLIEVTKKHAKVFKSVAKGSVPEVVEPIDEWRVHE
TSNREKRSQGQGKHHAEKTDPVAEEAYLVKFYMEELSGVIEKADSVLLVG
HGNAKSNIAEVLASALCERQPGLTDKIEDVLRVDGKHITQNQLLKLGRRH
LTHTEDPRRPT*
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mRNA from alignment at chr_00:1459889..1464588-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001170.2 ID=Ec-00_001170.2|Name=Ec-00_001170.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4700bp|location=Sequence derived from alignment at chr_00:1459889..1464588- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CCAAGCGGGCTGCAATTCAAGAGCAAGGCGCGTGCTCTTGGGCACAATAC
GTCCTAGATTTGAACGACAATGATGCTCACGCAGGCAGTGGTGCTGGTGC
TCGGGTGTAGTATATCCCATGCGTTCGTCCTGCCTCTGGTCGGCAGCCGG
AATGCAGGCAAGAACAACCCTCTGGCATGTCTAGACTATGGGGCAAGAGA
ATGCTTGTGGCAGGGGTTTGAGGGGGAGATAGCCAGCGACAGCTGTGCGT
TGCAAGGGTAGATCTTTCGCAGGGTTGAGTGCGGGATCAATAGAAGAGTC
GCTTGGGCTCCTGTCTTTGGCTTTCGCTTTGGTAGAGAGCGTAATCTCTG
GTATCAATGTATCGATCTCGGGCCGACCCTGTTTGCAGTTGAACGTTGAA
TAACATGCTCATGCAACATGCAACAGCGAGACCTGTAACCAAAATATCTA
CTGCTGTACATGTAATACGTTGTACTGCGCCTGTCATATTTGCGCCTCTT
GTTGTTTGTCTTCCTTGCTCAGTAGCATCCATTGGAGGGAACCTTGCACC
ACAACGCGCCCCTGTGCCTCTCCGTCAGCAGCAAGAAGCGGCAGTAAATG
CGGCCGAAACGGTGAGAACAACACCGCTGCTGCTGCTGTTGAGAACTTGT
TTGCCCGACGCCGTACACGGTACGGGCTGCTGGTATTTGGGGCTCCTGCG
AGAGTGTGCACCGATAGGACCAGGCATGATGAGAGAGCGCTCGCAATGTG
CCCCGCATGATGAACCACGGGTCCCTTCATCAAAAATAACAATTTGCAGT
ACCAATGATCTGCCAGTCTGCGTACTTGTCATGAAGGTCGGTACTACTGG
AAGGCCGGAAGGGTTCCCCAGTTTCCCAGTTGTCCCGGCGATGGCTCACA
TCTTACATGGCAGTAGTTCCATGGTTGATTTATTCCAGTTCACAGCGAAA
TACGAGTACGCCAGTAGAAGGTGAGGGTCCAGAAAGAACCAGTTCGTAGT
CGGGAAGCCCGTCAGCGCGCGCCTTGCGCAGCACACACTGCTGTTCGGGG
TTTGGTGGGTGTCGGACGCTTTGTATGCGAGCTGTTCAGTCGCGGCCTGC
AGGGCTGCCAGTGTTACTGATGTATATTGATCGGGTACAAGACGCAAATC
AAAATGCACCTCGACTCAACCCAACTGGTTTGCACCTACAGGGTTTTTAT
TTCTTTCGTTCGTCATGTGTAGGTCAGCCTTCCTCTCAAAATAAGGTTTA
GGTTGCTGTATCAGCGCATCCATTGGCCAATGTGTGTATGTCCAATTCAA
GTAGGGTGTGTCATCGAGTACATATGGTTTCGAAACGGACTGAAAGCTGC
AGAGTTGGTGGGGTGGCCTAGATCGTCTGTGACGTACGGCTAGCTCGACA
AGGGGAACAGGGGCCAGCCCCTTTGGCTGCCGGACTCGCTTGTTGTTTGA
ACAAGCGTTGCAGGTTGCCAGCCCTCGGGAGTCAAGGGGGTCACGTGTGG
ACCTGAAGCCGTTTCCATCAGGGGTCCCCCATCCAGTTTGAACATATGGG
AATTGAATGTTTCAATTTGTAGGGCGGCAACCCGGGGTGTCTTTGTCCTT
TTTTTTTGCCCCCCCCCCCCCGCCGTCTTTTTATGGTGTGGTGCAGGCGC
CAGAGGGATCCCTGGTATTGATCGAGGTGACGAAGAAGCACGCCAAGGTC
TTCAAATCAGTCGCCAAGGGCAGGTGAATTCCAGAAAGATCGTCACCACG
TGCAATCTTATGCTCTGCTTCCGACAACCATAACGCTGCTAGTTTTATGG
AACGACCCTCCCAAGACTAATAATCAAGCTCGATGCTCCCTGAGCAATGG
AAGTAGTGATATTTCAACGGATTGTTTCGTGGATGACGTTGAGAGCTCTC
TTTAGACGTATCGATCGGTTCCCACTGCTTGGTTGTGGAGCAATCGAGTG
TTCAAAGCCGGTCCCTTAGATGTGCGATGACCTTCTTTTTGCGGTGTTTC
GGGAAACTTTGCTGAGGTAGCAAAGCCAGCGCCGGTGGTAAACATGCCGA
AGGGGCATAAAAAAAACTTGCCCCACTGTGCTATCGATCACCAGACCATG
CCGCAGTCAATTCCGCGCATGGGGTGTGTTTGAAGTTCCTGTTCGTGCTG
ACATGTGATGTGGCATGTGTCGCGCTTAGCTTTCTCGTGCTGATGCATGT
CTCCCCCCACCACCCTTGTCTCCTTGATTTCGCTTTTGAATGCCCGCTAC
CCGCCCTCGACCCTCCTACCGTCTCCATTATATACTGCTGTTGTTGTTTG
TGAAATAGCGTGCCTGAAGTTGTGGAGCCGATTGACGAATGGAGGGTACA
TGAGACAAGCAATAGGGAGAAGAGGAGCCAGGGGCAGGGCAAGCACCACG
CAGAAAAGGCAAGAGAGAAGGGGGGAGGCCGGCCGGGTCGTTGAGTTGCC
AAGACGTGGACGGTGTCGCGGGCAACACCCTGCGTGCCGTCGAGGTTACG
TGGTTTCGTGTTTTGCAATGCCACGGGTTGGTGCCGTTCGCGGGATCGCG
TAGCCAACAGAATCCTTCGAAAAATACTCCTCCTGGATGGCAGCAATCAA
GGCCCAATGAGAACGGGCAGCTAAGTTGAAAGCACGGTACCTATGAAACG
TATTTTCCTTCCTATCGTCACTGTATGCCGACATTGGTGCTGCAGCGGTC
ACGGGAAACTACACAGGAACTGCACGACTGTGCTATCCACGCTGCTGGCA
ATGACATGCACGTAGCAAGGCTAACCGTTCGTGAACCTCTACTTGCAGAC
GGTGTACCCTTCCCCTACCAGCCCCTCGCGAATGTAGGGCTCTTCTCAAC
TTGGGCGTCATGTCTCGGACTTTTTGTCCAAGGGTTGACGGCCGTAAAAC
TTGTCATGTTATATTGTATATGTGTTACAACGCAGGCCACATGTACGACC
TACGCTCTCACGGCCTTCTCTGACTTCGTTGTCCACGCAATGCCCTCATA
TACCCATGTGTTGTCGCGCCTTTCCTTAATTCCATGGCGAAATCAGACGG
ACCCGGTGGCAGAAGAGGCGTACCTCGTCAAGTTTTATATGGAGGAGCTG
TCCGGGGTGATCGAGAAGGCCGATTCAGTGCTTCTGGTGAGAGCAATGCT
GTTGTGAAGCTGTTGTGAGTAGGACACCAACCTTCAGGTTACTCGGTATC
ACTACACACGAAAGGACGTTAGGTTTTCGATGTTGGCGACAACCGAGGGT
AGCATACGACATGCGACTTTGGTTTCAGCATAAGAGATATTTGCACTGAA
CAGCAGAAGAAGCCGAATGCTTACGGTGTGAAGACGACAACGGCAAGAAC
ATCTACCCGCCGTCCGTTGGTTGTCAAACTAGGACCTGTTGTTGCTACAC
CTTCACAGAGGACTGCACCGTCGGTGTAACCACAGATCGAGCTAACACCT
GAACGTGTTCCGTTGGGGTTCGTCCACTTGGTTCTCACACAATATGAAAC
ATGACGTCACAGGTCGGTCACGGCAACGCAAAATCCAACATCGCCGAGGT
TCTAGCATCGGCTCTCTGCGAACGCCAGCCTGGTTTGACGGTGAGAAACA
AGCCGCTCTCTTTCTCTTTCTCTGGCCGCCGGTTGGCACCCCTTGAAACA
CCCTGTGTATGTGTTATCGTCCCCTTTATTCTTCATTCTGGGTGTCAGCC
TTCACCATTCGGTATGAGTTTGTCGACGGTAATGAGTTAACGAAGGTAAG
ACTCAGGTTTGTGTTGTTCCACTTCCCTCTTGCGGTGCTTGCTTTCAGTT
CCCACGCGAAAAGTGCTTAGCAGTCTATTCACTCGTGTTTGTGCATGTTC
ATGACGAAACGCTCCCAAGTCAATTTGCGAGTTTCATCACGCCGGAGAGA
TTCGAACCCCGAACATGAGGGTCAGGTTTACGAGGTTACGAACTGAACCG
CCGTGTTGACCAGCTTTTTAGTTCACCGCTTTAACCTGGGATAGGAAGTT
CCTCCCGATATCTGCTCAGCCTGTCGGTATCCCACTACCCTCCCCGACCG
CCGTGATACTGATGATATTTGTACCTACATGTATGTCTTCAAGGAGGGCC
AAAAATGAACATCCTCAGCGAACGTTTGTGCAGGCCAGTTTAACGCTCGC
TATCGGTGCCACTTGTCTGGTGTGTTTACTGCCTGTCTTCTTGCAGGATA
AGATCGAAGATGTTCTACGGGTGGATGGCAAGCACATCACGCAGAACCAG
CTCTTGAAGCTGGGCAGGAGGCATCTTACCCACACCGAGGACCCTAGGAG
GCCGACCTAAACCAGCTTCACACCGTCAAGAGAGCTTCACACCGTCAAGA
GAGCACAACCCGCGGGTGTAGCTTATTTGTCCGATCCTAAGGCAATACCC
GCAATGTGAAGAACAAGTCTGCTTTCTTCAGAAATTGCGCCTAAGGTCAA
TAGACGTCAAGCAAGTGTTGGAAATGCACAGCGGCACGAAATTGAGCCAC
CACTATCCTCGGCAGCGTTAGTTGCGGTGTGTAGGGGGGTGAGTTTCACT
ATGAAGTTGTTCTCTCGGCGGTTGAATGTAACGATTATGATGAGTCCCTG
TGGGAGAAGAATCTTGGGCGGGGGGGGGGTTGGGAAGAAGGTTGAATCAA
CATCATTTGTGTGAACCGTGACTCTGTGCGACCTCTAAACTACAGTAGTT
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Coding sequence (CDS) from alignment at chr_00:1459889..1464588-

>Ec-00_001170.2 ID=Ec-00_001170.2|Name=Ec-00_001170.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=636bp|location=Sequence derived from alignment at chr_00:1459889..1464588- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGCTCACGCAGGCAGTGGTGCTGGTGCTCGGGTGTAGTATATCCCA
TGCGTTCGTCCTGCCTCTGGTCGGCAGCCGGAATGCAGTAGCATCCATTG
GAGGGAACCTTGCACCACAACGCGCCCCTGTGCCTCTCCGTCAGCAGCAA
GAAGCGGCAGTAAATGCGGCCGAAACGGCGCCAGAGGGATCCCTGGTATT
GATCGAGGTGACGAAGAAGCACGCCAAGGTCTTCAAATCAGTCGCCAAGG
GCAGCGTGCCTGAAGTTGTGGAGCCGATTGACGAATGGAGGGTACATGAG
ACAAGCAATAGGGAGAAGAGGAGCCAGGGGCAGGGCAAGCACCACGCAGA
AAAGACGGACCCGGTGGCAGAAGAGGCGTACCTCGTCAAGTTTTATATGG
AGGAGCTGTCCGGGGTGATCGAGAAGGCCGATTCAGTGCTTCTGGTCGGT
CACGGCAACGCAAAATCCAACATCGCCGAGGTTCTAGCATCGGCTCTCTG
CGAACGCCAGCCTGGTTTGACGGATAAGATCGAAGATGTTCTACGGGTGG
ATGGCAAGCACATCACGCAGAACCAGCTCTTGAAGCTGGGCAGGAGGCAT
CTTACCCACACCGAGGACCCTAGGAGGCCGACCTAA
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Synonyms
The feature 'Ec-00_001170.2' has the following synonyms
Synonym
Esi0013_0050
Esi_0013_0050