Ec-00_001130.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001130.1
Unique NameEc-00_001130.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length348
Homology
[Close]
BLAST of Ec-00_001130.1 vs. uniprot
Match: D8LE67_ECTSI (Protein MAK16 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE67_ECTSI)

HSP 1 Score: 506 bits (1304), Expect = 5.160e-177
Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 2 
Query:  125 MQSDDVIWQVVNYQFCSFKSKIAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALMEAEDEYAEQNPEAMEEEXXXXXXXXXXXXXXXXXXXDIEDTAEWGGSYWGAPGSAGGPQAARGGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRRGATGGATTKKAKRQPKAKPSHPYVXXXXXXXXXXXXSESMSYNW 1165
            MQSDDVIWQVVNYQFCSFKSKIAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALMEAEDEYAEQNPEAMEEEXXXXXXXXXXXXXXXXXXXDIEDTAEWGGSYWGAPGSAGGPQAARGGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRRGATGGATTKKAKRQPKAKPSHPYVXXXXXXXXXXXXSESMSYNW
Sbjct:    1 MQSDDVIWQVVNYQFCSFKSKIAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALMEAEDEYAEQNPEAMEEEXXXXXXXXXXXXXXXXXXXDIEDTAEWGGSYWGAPGSAGGPQAARGGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRRGATGGATTKKAKRQPKAKPSHPYVXXXXXXXXXXXXSESMSYNW 347
[Close]
BLAST of Ec-00_001130.1 vs. uniprot
Match: A0A835ZFG7_9STRA (Protein MAK16 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFG7_9STRA)

HSP 1 Score: 307 bits (786), Expect = 9.010e-99
Identity = 169/247 (68.42%), Postives = 197/247 (79.76%), Query Frame = 2 
Query:  125 MQSDDVIWQVVNYQFCSFKSKIAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALMEAEDEYA-EQNPEAMEEEXXXXXXXXXXXXXXXXXXXDIEDTAEWGGSYWGAPGSA 862
            MQ D+VIW V+N+QFC+FK+KIAKEQTFCRN YN TGLCN+ SCPLANSRYATI+EHDGVCYLY+K+IERAH+PKNLWEKIKL RNY +ALE VS +L++FPK+LQH++KQRLTKIHQYLIRMRKLKLKA+PKLV IN KVE+RE         AA L+RSIE ELLERLK+GTYGDIYNFPEVQY KAL +AE+E++ E+        XXXXXXX            D+ED A WG SYWGA G +
Sbjct:    1 MQCDEVIWSVINHQFCAFKAKIAKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQAEEEFSGEEEXXXXXXXXXXXXXXVEYVEGDEEEESDMEDGA-WGSSYWGAEGGS 246
[Close]
BLAST of Ec-00_001130.1 vs. uniprot
Match: A0A067C7V2_SAPPC (Protein MAK16 homolog n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C7V2_SAPPC)

HSP 1 Score: 278 bits (712), Expect = 4.180e-88
Identity = 137/196 (69.90%), Postives = 168/196 (85.71%), Query Frame = 2 
Query:  125 MQSDDVIWQVVNYQFCSFKSKIAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALMEAEDE 712
            MQ D+VIW V++ QFCSFKSK+ +   FCRNEYNVTGLCN+ SCPLANSRYATIREH+GVCYLY+KTIERAH+PKNLWEK+KLS+NY K+LE++  +++F+PK L HR+KQRLTKIHQYL+RMRKL+LK KP LV IN K+E+RE  RE+KA  AAKL+ SIE ELL+RL+KGTYGDIYNFPE ++ K L + E+E
Sbjct:    1 MQHDEVIWGVISNQFCSFKSKLREGAMFCRNEYNVTGLCNRQSCPLANSRYATIREHNGVCYLYMKTIERAHSPKNLWEKVKLSKNYTKSLEQIDAQMQFWPKKLIHRNKQRLTKIHQYLMRMRKLRLKTKPNLVVINKKIERREARREEKAKTAAKLDSSIEKELLQRLQKGTYGDIYNFPEREFAKVLDDNEEE 196
[Close]
BLAST of Ec-00_001130.1 vs. uniprot
Match: A0A4D9D3B1_9STRA (Protein MAK16 homolog n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3B1_9STRA)

HSP 1 Score: 275 bits (704), Expect = 1.990e-86
Identity = 142/191 (74.35%), Postives = 164/191 (85.86%), Query Frame = 2 
Query:  134 DDVIWQVVNYQFCSFKSKI-AKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKA-KPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALME 700
            D++IWQ++N+QFCSFKSK+ AKE TFCRN YNVTGLC +S+CPLANSRYATIRE +G CYL +KT ERAHTP  LWEKI+L  NY KALE+VS ELE+FPK+LQHR+KQRLTKIHQYLIRMRKLKLKA KPKLV I+ KV++REK RE KAL AAKLE++IE ELL RL++GTYGDIYNFPE  Y K L E
Sbjct:    5 DEIIWQIINHQFCSFKSKLNAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEELEYFPKYLQHRNKQRLTKIHQYLIRMRKLKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDE 195
[Close]
BLAST of Ec-00_001130.1 vs. uniprot
Match: A0A1V9YTR0_9STRA (Protein MAK16 homolog n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YTR0_9STRA)

HSP 1 Score: 274 bits (700), Expect = 3.820e-86
Identity = 135/194 (69.59%), Postives = 164/194 (84.54%), Query Frame = 2 
Query:  125 MQSDDVIWQVVNYQFCSFKSKIAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALMEAE 706
            MQ D+VIW V++ QFCSFKSK+ +   FCRNEYNVTGLCN+ SCPLANSRYATIREH+GVCYLY+KTIERAH+PKNLWEK+KLS+NY K+L ++  +++F+PK + HR+KQRLTKIHQYL+RMRKL+LK KP LV IN K+E+RE  RE+KA  AAKL+ SIE ELL RL+KGTYGDIYNFPE ++ K L E E
Sbjct:    1 MQHDEVIWGVISNQFCSFKSKLREGAMFCRNEYNVTGLCNRQSCPLANSRYATIREHNGVCYLYMKTIERAHSPKNLWEKVKLSKNYTKSLAQIDEQMQFWPKKMIHRNKQRLTKIHQYLMRMRKLRLKTKPNLVVINKKIERREARREEKAKTAAKLDSSIEKELLARLQKGTYGDIYNFPEKEFVKVLDENE 194
[Close]
BLAST of Ec-00_001130.1 vs. uniprot
Match: A0A3F2RF83_9STRA (Protein MAK16 homolog n=6 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RF83_9STRA)

HSP 1 Score: 273 bits (699), Expect = 6.540e-86
Identity = 136/191 (71.20%), Postives = 162/191 (84.82%), Query Frame = 2 
Query:  125 MQSDDVIWQVVNYQFCSFKSKI-AKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKAL 694
            MQ D+VIW V++ QFCSFKSK+      FC N YNVTGLCN+S+CPLANSRYATIREHDGVCYLY+KTIERAHTP  LWE++KLS+NY K+L ++  +L+F+PK L H++KQRLTKIHQYL+RMRKL LK KPKLV IN K+E+REK REKKA+VAAKL+ SIE ELLERL+KGTYGDIYNFPE ++ K L
Sbjct:    1 MQHDEVIWGVISKQFCSFKSKLPGTGNMFCSNPYNVTGLCNRSACPLANSRYATIREHDGVCYLYMKTIERAHTPNRLWERVKLSKNYTKSLAQIDEQLQFWPKKLIHKNKQRLTKIHQYLMRMRKLTLKTKPKLVVINKKIERREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPESEFSKVL 191
[Close]
BLAST of Ec-00_001130.1 vs. uniprot
Match: W7TVF8_9STRA (Protein MAK16 homolog n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVF8_9STRA)

HSP 1 Score: 272 bits (696), Expect = 2.710e-85
Identity = 141/191 (73.82%), Postives = 163/191 (85.34%), Query Frame = 2 
Query:  134 DDVIWQVVNYQFCSFKSKI-AKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKA-KPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALME 700
            D++IWQ++N+QFCSFKSKI AKE TFCRN YNVTGLC +S+CPLANSRYATIRE +G CYL +KT ERAHTP  LWEKI+L  NY KALE+VS  LE+FPK+LQHR+KQRLTKIHQYLIRMR+LKLKA KPKLV I+ KV++REK RE KAL AAKLE++IE ELL RL++GTYGDIYNFPE  Y K L E
Sbjct:    5 DEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDE 195
[Close]
BLAST of Ec-00_001130.1 vs. uniprot
Match: A0A7S3QN91_DUNTE (Hypothetical protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QN91_DUNTE)

HSP 1 Score: 269 bits (687), Expect = 5.720e-84
Identity = 136/198 (68.69%), Postives = 169/198 (85.35%), Query Frame = 2 
Query:  125 MQSDDVIWQVVNYQFCSFKSKIAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKAL--MEAEDE 712
            MQ+D++IWQV+N+  CSFK+K  + Q FCRNEYNVTGLCN+SSCPLANSRYATIREHDG  YLY+KTIERAH+PKNLW++IKL +NY +ALE++ + L+F+PK L H++KQRLTKI QYLIRMRKL+LKAKP+LVT+  + EKREK RE+KA+ AA+L+R+IE ELL+RL+ GTYGDIYNFP  QY+K L   E EDE
Sbjct:    1 MQNDEIIWQVINHHHCSFKAK-TQVQNFCRNEYNVTGLCNRSSCPLANSRYATIREHDGKSYLYMKTIERAHSPKNLWQRIKLKKNYQQALEQIDKHLQFWPKFLVHKNKQRLTKITQYLIRMRKLELKAKPELVTMPARTEKREKRREQKAVTAARLDRAIESELLKRLQAGTYGDIYNFPLKQYEKVLDTQEVEDE 197
[Close]
BLAST of Ec-00_001130.1 vs. uniprot
Match: H3HCF7_PHYRM (Protein MAK16 homolog n=14 Tax=Phytophthora TaxID=4783 RepID=H3HCF7_PHYRM)

HSP 1 Score: 267 bits (682), Expect = 1.320e-83
Identity = 134/191 (70.16%), Postives = 160/191 (83.77%), Query Frame = 2 
Query:  125 MQSDDVIWQVVNYQFCSFKSKI-AKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKAL 694
            MQ D+VIW V++ QFCSFKSK+      FC N YNVTGLCN+SSCPLANSRYATIRE DGVC+L++KTIERAHTP  LWE++KLS+NY KAL ++  +L+F+PK L H++KQRLTKIHQYL+RMRKL LK KPKLV IN K+E+REK REKKA+VAAKL+ SIE ELLERL+KGTYGDIYNFPE ++   L
Sbjct:    1 MQHDEVIWGVISKQFCSFKSKLPGTGNMFCSNAYNVTGLCNRSSCPLANSRYATIREEDGVCFLFMKTIERAHTPNRLWERVKLSKNYTKALAQLDEQLQFWPKKLVHKNKQRLTKIHQYLMRMRKLTLKTKPKLVVINKKIERREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPEREFSSVL 191
[Close]
BLAST of Ec-00_001130.1 vs. uniprot
Match: A0A0P1A7J6_PLAHL (Protein MAK16 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7J6_PLAHL)

HSP 1 Score: 266 bits (679), Expect = 5.480e-83
Identity = 131/193 (67.88%), Postives = 163/193 (84.46%), Query Frame = 2 
Query:  125 MQSDDVIWQVVNYQFCSFKSKIAKEQT-FCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALME 700
            MQ D+VIW V++ QFCSFKSK+   ++ FC N YNVTGLCN+S+CPLANSRYAT+RE +GVCYLY+KTIERAHTP  LWE++KLS+NY K+L ++  +L+F+PK L H+ KQRLTKIHQYL+RMRKL L+ KPKLV IN K+++REK REKKA+VAAKL+ SIE ELLERL+KGTYGDIYNFPE ++ K L +
Sbjct:    1 MQHDEVIWSVISKQFCSFKSKLPDTKSMFCSNLYNVTGLCNRSACPLANSRYATVREENGVCYLYMKTIERAHTPNRLWERVKLSKNYTKSLAQIDEQLQFWPKKLIHKCKQRLTKIHQYLMRMRKLTLQTKPKLVVINKKIDRREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPEREFSKVLAD 193
The following BLAST results are available for this feature:
BLAST of Ec-00_001130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE67_ECTSI5.160e-177100.00Protein MAK16 homolog n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835ZFG7_9STRA9.010e-9968.42Protein MAK16 homolog n=1 Tax=Tribonema minus TaxI... [more]
A0A067C7V2_SAPPC4.180e-8869.90Protein MAK16 homolog n=4 Tax=Saprolegniaceae TaxI... [more]
A0A4D9D3B1_9STRA1.990e-8674.35Protein MAK16 homolog n=1 Tax=Nannochloropsis sali... [more]
A0A1V9YTR0_9STRA3.820e-8669.59Protein MAK16 homolog n=1 Tax=Thraustotheca clavat... [more]
A0A3F2RF83_9STRA6.540e-8671.20Protein MAK16 homolog n=6 Tax=Phytophthora TaxID=4... [more]
W7TVF8_9STRA2.710e-8573.82Protein MAK16 homolog n=1 Tax=Nannochloropsis gadi... [more]
A0A7S3QN91_DUNTE5.720e-8468.69Hypothetical protein (Fragment) n=1 Tax=Dunaliella... [more]
H3HCF7_PHYRM1.320e-8370.16Protein MAK16 homolog n=14 Tax=Phytophthora TaxID=... [more]
A0A0P1A7J6_PLAHL5.480e-8367.88Protein MAK16 homolog n=1 Tax=Plasmopara halstedii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1389356..1395128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score511.5
Seed ortholog evalue3e-142
Seed eggNOG ortholog2880.D8LE67
Preferred nameMAK16
Length1277
KEGG rclassRC00020,RC02814,RC02821
KEGG koko:K01738,ko:K14831,ko:K19984
KEGG ReactionR00897,R03601,R04859
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00021
Hectar predicted targeting categoryother localisation
Gene idEc-00_001130.1
GOsGO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG5129@1,KOG3064@2759
EC2.5.1.47
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001130Ec-00_001130Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1389356..1395128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001130.1Ec-00_001130.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1389464..1395003 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001130.1.8Ec-00_001130.1.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1389356..1389717 -
Ec-00_001130.1.7Ec-00_001130.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1390881..1391025 -
Ec-00_001130.1.6Ec-00_001130.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1391674..1391754 -
Ec-00_001130.1.5Ec-00_001130.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1392170..1392313 -
Ec-00_001130.1.4Ec-00_001130.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1392535..1392708 -
Ec-00_001130.1.3Ec-00_001130.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1393235..1393391 -
Ec-00_001130.1.2Ec-00_001130.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1394026..1394108 -
Ec-00_001130.1.1Ec-00_001130.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1394998..1395128 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0011303UTR:Ec-00_001130.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1389356..1389463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001130.1CDS:Ec-00_001130.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1389464..1389717 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0011305UTR:Ec-00_001130.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1395004..1395128 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001130.1 ID=Ec-00_001130.1|Name=Ec-00_001130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=348bp
MQSDDVIWQVVNYQFCSFKSKIAKEQTFCRNEYNVTGLCNKSSCPLANSR
YATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEF
FPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREK
KALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALMEAEDEYAEQ
NPEAMEEEEEEEEGEVEYVEDLEEDESDIEDTAEWGGSYWGAPGSAGGPQ
AARGGDSDSDEDDDDDEDEEQQEGGGSGKGKRKARSGKGERGGEDGDGPK
RRRGATGGATTKKAKRQPKAKPSHPYVEVEYEEETEAAASESMSYNW*
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spliced messenger RNA

>Ec-00_001130.1 ID=Ec-00_001130.1|Name=Ec-00_001130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1277bp|location=Sequence derived from alignment at chr_00:1389356..1395128- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGTTGCTCAACGCCAGTTATTCGATTGCGCCGCGTCCTGCCTCTCGCCCG
AGAGCAGAGAGCACACTCGAGCTCCGCTGAAGGTGCTTCCCGGCGTGTTT
CCCGTTGCTTGCTGGCCCTTGAACCATGCAGAGCGATGACGTTATCTGGC
AGGTGGTGAACTACCAGTTCTGCTCTTTCAAGAGCAAGATCGCGAAGGAG
CAGACGTTCTGCAGGAACGAGTACAACGTGACCGGGCTCTGCAACAAGAG
CTCGTGCCCCCTGGCCAACTCTCGGTACGCCACCATTCGAGAGCACGATG
GCGTGTGCTACCTGTACATCAAGACCATCGAGCGCGCACACACGCCCAAG
AACCTTTGGGAGAAGATCAAGCTGTCCCGCAACTACGGCAAGGCGTTGGA
ACGTGTTTCTCGAGAGCTGGAGTTCTTCCCGAAGCACTTGCAGCACAGGA
GCAAGCAGCGCCTGACCAAGATCCACCAGTACCTCATCAGGATGCGCAAG
CTTAAGCTCAAGGCCAAGCCGAAGCTCGTCACCATCAACCCCAAGGTGGA
GAAACGCGAGAAGATGAGAGAGAAGAAGGCGTTGGTGGCGGCTAAGCTAG
AGCGTTCGATCGAGGGGGAACTGCTGGAGCGGCTGAAGAAGGGTACCTAC
GGCGACATTTACAACTTCCCGGAGGTCCAGTACGACAAGGCGCTGATGGA
GGCGGAGGACGAGTACGCGGAGCAAAACCCAGAGGCGATGGAGGAAGAGG
AAGAGGAAGAGGAGGGAGAGGTGGAGTATGTGGAGGACCTCGAGGAGGAC
GAGAGTGATATCGAAGACACGGCGGAGTGGGGGGGCTCGTACTGGGGGGC
ACCAGGATCGGCGGGCGGCCCGCAGGCGGCAAGAGGCGGGGATAGCGACA
GCGACGAAGACGATGACGACGACGAAGACGAGGAGCAGCAGGAGGGTGGT
GGTAGCGGGAAGGGCAAACGAAAGGCGAGGAGCGGCAAAGGAGAGAGGGG
CGGTGAGGATGGTGACGGGCCGAAGCGACGACGCGGGGCTACAGGCGGCG
CAACCACGAAAAAGGCGAAACGGCAACCGAAGGCGAAACCGTCGCACCCG
TACGTGGAAGTGGAGTACGAGGAGGAGACGGAAGCGGCTGCTTCGGAGAG
CATGTCTTACAACTGGTAGTTGCTTGCTCGCCGCTGTCTTGTGGTCGGTA
TCGTATGCGTATCATGGGTAGATTTTGCTGCTATTAATACCGTAGGTTGG
GATTGTTGGTGTGCAAGTGCTGTATTC
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protein sequence of Ec-00_001130.1

>Ec-00_001130.1 ID=Ec-00_001130.1|Name=Ec-00_001130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=348bp
MQSDDVIWQVVNYQFCSFKSKIAKEQTFCRNEYNVTGLCNKSSCPLANSR
YATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEF
FPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREK
KALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALMEAEDEYAEQ
NPEAMEEEEEEEEGEVEYVEDLEEDESDIEDTAEWGGSYWGAPGSAGGPQ
AARGGDSDSDEDDDDDEDEEQQEGGGSGKGKRKARSGKGERGGEDGDGPK
RRRGATGGATTKKAKRQPKAKPSHPYVEVEYEEETEAAASESMSYNW*
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mRNA from alignment at chr_00:1389356..1395128-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001130.1 ID=Ec-00_001130.1|Name=Ec-00_001130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5773bp|location=Sequence derived from alignment at chr_00:1389356..1395128- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGTTGCTCAACGCCAGTTATTCGATTGCGCCGCGTCCTGCCTCTCGCCCG
AGAGCAGAGAGCACACTCGAGCTCCGCTGAAGGTGCTTCCCGGCGTGTTT
CCCGTTGCTTGCTGGCCCTTGAACCATGCAGGTAAGTGTGTACGTCTGTA
CGTGTGGTCGTTTAATTCAGCCTGCAGTTTGCGAGAGATGTCTGGCTCAA
TCAACATCGTCCCAAACTCCGCCACTCAACTCCACACAATCTCTGGAGGA
CCTCTGATGAGCCCGCATGTCCTGATCATGTGATGTGGTCAAGTACAGCA
GCATCCCACTTGGTACTTAGAGAGTGCGGACGATGCAGTCCAAGATGGCC
ACGGGGTCCTTAGGTCCCCGAATATCGTGTCGGGCTGTCTCTTGGCTGTG
CTGTCTTTTGTACCCACATGGGGTATGTACATCGTACCGACATCGCACAT
CCTGCTGCTGCCAGTGCATGGCTCGGACTCTACTGCGAGCATTTGAACAG
TAGATAGGAGCTCATTGTGCCCAAGTGGGACCCTGTCCCTCAGAGAGAGA
GCGAGGCCGGGCTAGCAAGGTTTCCCCGACTATTTCCGTGCCCATTGTGA
TCAAGCCTGTAGCGACGTGTTCGGTACTGTTATATTACCACGGCCCGTGC
TGCCACCGGCCAGTGCGGGGTTTCTAAAGGAACGCACAGCTGTCTACTAC
TCCCAGGATTCGAGTACATGGTTGGAACCCTCGTGCCGATGAATTCCGCT
AACAACCGGCAAGGAATACGTCTAATGTAGGGAAGACGGTCGGGCATGAA
GATTCCACGCTTATGTAGTATGCATACAGTAACTCGCCGAAGTTGCTGAC
ACGAAAAGGCTGTCGCCCACATGACGCCACAAACTCATTTGTATCGACGA
AACCACATAAGCAAACCCGGAACATCGATCCCATGCTGACGTTTGTTGAC
CTGCTGCTTTTCTTCCGTCGGTGTCGTCCCCTTTGCGTGCTGTATCCTTG
TTTGCTTTTGCGTCTCGCAGAGCGATGACGTTATCTGGCAGGTGGTGAAC
TACCAGTTCTGCTCTTTCAAGAGCAAGATCGCGAAGGAGCAGACGTTCTG
CAGGTCGGTGCAGCGCACTGCTTGCTGCCCGCCTTAGCCCTCTGGTGGCA
TGTGTTGTTGTTGTTGTTATTGTCTTCACATTAAAAACCGTTCCGATCTC
TCTGCACACTACCTTCATCTGTCCGTACTGACGTGTAGCAAAATTGGTTG
CCTCATATACCCGGGACGTCGGGAAAGAGGGCTGCGGTGGTGAACAGATC
TTTTACGGCAGTGGGGGGAGGCTATCCTGTATGTTCTCATCCGAAGCCGA
CGGCGGTTCTACCATCTTCCATGATCCTCCATGCACCGCTTGCCTAAAAA
CTGCAATATTTCCTACAACACTATCGGGGTATCGAACACGGGAATCGTGT
GCGCCTTGGGAACTATTAATAGTCTGCGTCGCCCGCCAAAGGCAGGCAGA
TTATCCTACAAAAAATCCCATTATTCTGTTGCCCGCTTCGCTGTTTGCTC
CGCCAGCTGTCGAAGCAAGCGTCGGCTGGAGCCTCCCACGCATTCCAGCT
CGGGTATACTGTACCGCTTTCTGAACGCCAGCGATCCATCACTATCTTCC
TAGTCTTTGTGTTGTAGCCTGCGTTGTTCCTTGTGGTGTTTACAGTATCT
CCTGTCGACATTCGTGTATTCATTCTACGTTTGCTAGGAACGAGTACAAC
GTGACCGGGCTCTGCAACAAGAGCTCGTGCCCCCTGGCCAACTCTCGGTA
CGCCACCATTCGAGAGCACGATGGCGTGTGCTACCTGTACATCAAGACCA
TCGAGCGCGCACACACGCCCAAGAACCTTTGGGAGAAGATCAAGGTGGGA
AATGCATTTTACTTGAGAGATGCCATACGTGTATGCTTCGGATCGCAGTT
AACCAAAGCGGTAAGATCAAGGTGCGCCAAGTGACTGATCTTGCCCCGTT
GTCTATCCATTCGTGCGGAACACGAAGCATTGTTTTCGGACACAGGTTCT
CACCTGGTTGTTGTATGCGGCAGTCTCTGCATACCTGACAGATCCGGGGC
ACATGCGCCTGTCAGACTTCCTCCCTGGGTTCTGTTTAGAAACCCTCGCT
TTCCGTACATGCGTGGAAATCTTTTAGGTGGAGAGGCAAGCTTAAAGGGC
GAGTAGAACCCGCCAGAGAACTTTGACAATGCGGACGTTCTGACGAAGAG
AAGAACAGATACATCGTTGAAAAATGACGTTGCGCGTTGGTGCGTGGATT
CTTGCGTGTCGGTGGCTCCTACATGGCCGAAACCCGCGTGTCTCTGTCCG
AAACCTGTGTAACCTTTGTCGTTCGGTTCTCCTTTGTCGTTGTTGTTGCT
CCTCGGACACGCGAGGATAGCTGTCCCGCAACTACGGCAAGGCGTTGGAA
CGTGTTTCTCGAGAGCTGGAGTTCTTCCCGAAGCACTTGCAGCACAGGAG
CAAGCAGCGCCTGACCAAGATCCACCAGTACCTCATCAGGATGCGCAAGC
TTAAGCTCAAGGCCAAGCCGAAGCTCGTCACCATCAACCCCAAGGTGTGT
GCTTACTCAGAGGTAGTGGCACGCAGACCTCTTCCTTCTCTCCTTACCAG
TAACCATGCTTTTGCGTTTCCGCAACGAGGGAGTATGACGTCATCAGTGG
CGCTTCTCTCCCCTTCGGAGGGCGAGACCCATCCCGCTTTTACTGTAGAC
GCTTGGGAGTAGGGAATCTTTTTGCGTGTTGTTCTAACTAACAAGGCGCT
TGTTCGTGGTGTTAGGTGGAGAAACGCGAGAAGATGAGAGAGAAGAAGGC
GTTGGTGGCGGCTAAGCTAGAGCGTTCGATCGAGGGGGAACTGCTGGAGC
GGCTGAAGAAGGGTACCTACGGCGACATTTACAACTTCCCGGAGGTCCAG
TACGACAAGGTAACATACCTATTTTGTCAGTTGTTGTTGGAGGTGGTGCT
TTTGTTTTGGTTGTTGGTGATGTCGTTGTTGGCGGTGGTGCTGTTGCTGT
TGCTGTTGCTGTTGTTGTTGTTGTTGTTATCGTGGTTGGTGTTATTTTCT
TGTTGGACGATGAAGATGACGACGACGACACGAGTACGTGGTGGCGCCTA
GCTCGCTATCATGTTGCAAGGGGCTGATCTTCTGATTGATACCTCTCGTG
GCACAGGTGTTGATGACTGTACCAAAACTTGTCCATCTTGCAGGTTTTTC
AGGAAGGGACTTGACCCTTTACTTGCGAACTGGGAAGACCGAGGTCGGGT
ACTCCACGTTTCATGACCATGTTGTCTTGCTACGCTATGTTTTATTGTCA
TGTGTAATAATCGACTCCACACAGGCGCTGATGGAGGCGGAGGACGAGTA
CGCGGAGCAAAACCCAGAGGCGATGGAGGAAGAGGAAGAGGAAGAGGAGG
GAGAGGTGAGAGAAAAGAGGGGGGGGAAACACCACTTGTATCGGAGGGAC
GAGTATTGTGGTATGATGTAACATTCACCGCACACGCGCAACCCCACTGG
CTATAGTTTTTTCGTTTTTTTGTGTTTTTGGAGGTTCTGATGTGTGTATC
CAGTCAAAAGCAGAAAACGTGAAAGTTGCTTCAGGATGCTTGTGATGATT
TTGGAGTACTTGCATACCATACATATTTATCATTGAATCTATTTTTCTAT
TGGCTCGCGCTCTCATGCCACTGCTGATATGGTTGCCTTCCACGCTCTGG
CCTCTATCTAGCACACTGCCCTTTTTGTGTTCTGGTCCAGGCAGGTGCAG
CACGATACAGTAGGCGCCACGAATGTTGGGGCCACGAATGTTGCCTGCAT
TTGTTTGGGGGAGGAGGATCTGCGAAGAACCACTTTTTGGTCGCTGGTTC
GTCAGGAGTTTGTTAGTGTTTGTGCCTGGACAGATGAAAAGGTGTCAGGA
AATAAACAACGCCAGCAACGCTGCCACTCACAAGTCGGAAAATGCAGATA
CCTTCTCCGCCGCCCTTACCTACTGTAGCTGCTCCGAGATGTCGCAAGTC
TACAGGTCTTGACCACCGTGAACACCCACCCTCGTTCCGATCGATCTAAA
CAGGTGGAGTATGTGGAGGACCTCGAGGAGGACGAGAGTGATATCGAAGA
CACGGCGGAGTGGGGGGGCTCGTACTGGGGGGCACCAGGATCGGCGGGCG
GCCCGCAGGCGGCAAGAGGCGGGGATAGCGACAGCGACGAAGACGATGGT
GAGAGTTGCTCTGACCCCTTTCACTGTTGCTGACTCCTCGCGTACATATC
CTTATGGCTACGAGCGTTGATGAGTTGTATGCATGGGGGCTGGTTTATTT
TTGTGCTCGAGGACAACTTTCGATGCACGCGACGGTCGACGATATTTGCT
GCGCTTCCAATCGGGCATAGTGGTAGTTCTACCGTGTAGGTGACACTATA
CATGACGCCCCATGGACCGATTTTCAAAGCTGAACTACTCCATGGCACAA
ACGGTGTCGGTGCTGACAATGGTGGCGTGAAACCGGCGGTCTCGTCGACA
GCTTTCCGGAAAAGCGTATCATGCATCGTTTGATTTTGGTACAATTTCCG
CTTCGTGTGTCACGTGCTACCGAGGCGTGCAGCTAAAACCAGCCTTTGCC
TTTTATTTCTCGTGTGCGCGAGCCGTGACACTTCCGGAACGGCAGCCTGG
GGTGGTGTGTGTTGTGTGCTTTGTGGTTATATGGGTGTGTGCGGTGGTCA
TCGAAACCTTCGGACGCCGGTACATGATGGGGGTCGAGGTGTGAATCATG
GCGGGTGCGGCTGCAGAGTTGGAAGCACCGAAGGAGGAGGGGGGGAGGCG
ATCAGAGCTGAAGATCGCTACTATCTCTCCTCGTTCAGTGCTTCCAACTC
TGCAGCCGTACCCGCCATGATACACGCCTCGACCCCCATCATGCACCGGC
GTCCGAAATATTTAATGACCAGTTTGGGTTCTGAACCCATGGCCGTCGGT
ACGCACGCACGACCCTCGCAGATATGCGGGCAGCCTCGAGCAGATATCGT
TGGATGGGACAAAGCTGGCGGGTTCGGTGGTGCGATCGATCTGACGTGGT
TCTTGACTTGACCGTAGCAGATCCCATCACCCTCTTCCAAGCCACTCCAT
CAGTACCGCTGCTATATCTCTCTAACCTTTTTGCGCCACTGTAGGATACC
TCGCGCAGGACCACCTGGCATGTTAGTTAGTCCCCCTTTGGTGAAGAAGT
TGGGCGATCTGCAATCCCTCGGCGGACTATCCTGCTCTTCAAGCGTTTTT
TTCGCAATACAATACATGCCACCGTTTAGCCTATCTCCAATACATTCGTA
TTCTCAATTCTATCCCCTCTCTCTCTTCCCCCCCCGTCCCCTCCCCGATC
GAACATGACAGACGACGACGAAGACGAGGAGCAGCAGGAGGGTGGTGGTA
GCGGGAAGGGCAAACGAAAGGCGAGGAGCGGCAAAGGAGAGAGGGGCGGT
GAGGATGGTGACGGGCCGAAGCGACGACGCGGGGCTACAGGCGGCGCAAC
CACGAAAAAGGCGAAACGGCAACCGAAGGCGAAACCGTCGCACCCGTACG
TGGAAGTGGAGTACGAGGAGGAGACGGAAGCGGCTGCTTCGGAGAGCATG
TCTTACAACTGGTAGTTGCTTGCTCGCCGCTGTCTTGTGGTCGGTATCGT
ATGCGTATCATGGGTAGATTTTGCTGCTATTAATACCGTAGGTTGGGATT
GTTGGTGTGCAAGTGCTGTATTC
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Coding sequence (CDS) from alignment at chr_00:1389356..1395128-

>Ec-00_001130.1 ID=Ec-00_001130.1|Name=Ec-00_001130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1044bp|location=Sequence derived from alignment at chr_00:1389356..1395128- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGAGCGATGACGTTATCTGGCAGGTGGTGAACTACCAGTTCTGCTC
TTTCAAGAGCAAGATCGCGAAGGAGCAGACGTTCTGCAGGAACGAGTACA
ACGTGACCGGGCTCTGCAACAAGAGCTCGTGCCCCCTGGCCAACTCTCGG
TACGCCACCATTCGAGAGCACGATGGCGTGTGCTACCTGTACATCAAGAC
CATCGAGCGCGCACACACGCCCAAGAACCTTTGGGAGAAGATCAAGCTGT
CCCGCAACTACGGCAAGGCGTTGGAACGTGTTTCTCGAGAGCTGGAGTTC
TTCCCGAAGCACTTGCAGCACAGGAGCAAGCAGCGCCTGACCAAGATCCA
CCAGTACCTCATCAGGATGCGCAAGCTTAAGCTCAAGGCCAAGCCGAAGC
TCGTCACCATCAACCCCAAGGTGGAGAAACGCGAGAAGATGAGAGAGAAG
AAGGCGTTGGTGGCGGCTAAGCTAGAGCGTTCGATCGAGGGGGAACTGCT
GGAGCGGCTGAAGAAGGGTACCTACGGCGACATTTACAACTTCCCGGAGG
TCCAGTACGACAAGGCGCTGATGGAGGCGGAGGACGAGTACGCGGAGCAA
AACCCAGAGGCGATGGAGGAAGAGGAAGAGGAAGAGGAGGGAGAGGTGGA
GTATGTGGAGGACCTCGAGGAGGACGAGAGTGATATCGAAGACACGGCGG
AGTGGGGGGGCTCGTACTGGGGGGCACCAGGATCGGCGGGCGGCCCGCAG
GCGGCAAGAGGCGGGGATAGCGACAGCGACGAAGACGATGACGACGACGA
AGACGAGGAGCAGCAGGAGGGTGGTGGTAGCGGGAAGGGCAAACGAAAGG
CGAGGAGCGGCAAAGGAGAGAGGGGCGGTGAGGATGGTGACGGGCCGAAG
CGACGACGCGGGGCTACAGGCGGCGCAACCACGAAAAAGGCGAAACGGCA
ACCGAAGGCGAAACCGTCGCACCCGTACGTGGAAGTGGAGTACGAGGAGG
AGACGGAAGCGGCTGCTTCGGAGAGCATGTCTTACAACTGGTAG
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Synonyms
The feature 'Ec-00_001130.1' has the following synonyms
Synonym
Esi0013_0038
Esi_0013_0038