Ec-00_001110.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001110.1
Unique NameEc-00_001110.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length331
Homology
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BLAST of Ec-00_001110.1 vs. uniprot
Match: D8LE65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE65_ECTSI)

HSP 1 Score: 484 bits (1245), Expect = 7.480e-170
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 1 
Query:    1 MLSCSAVVRILVACVLVVDRSLEVRAAAEPSSGGDRRDTTLAGLAAETQEVVFEDLPEGFHDDIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWGQSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWGHMPFSPRGFFQXXXXXXXXXXXXXXXXXXXXXXDDIAGSTSGVPANTTFVQVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETQFRRGPWYQVTCGQWTTCGIRKHDGGVECWGVKTLNKTGAFYEEVSSADFHTCAVDENGEVECWGDALQAELVPDGFQAA 990
            MLSCSAVVRILVACVLVVDRSLEVRAAAEPSSGGDRRDTTLAGLAAETQEVVFEDLPEGFHDDIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWGQSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWGHMPFSPRGFFQXXXXXXXXXXXXXXXXXXXXXXDDIAGSTSGVPANTTFVQVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETQFRRGPWYQVTCGQWTTCGIRKHDGGVECWGVKTLNKTGAFYEEVSSADFHTCAVDENGEVECWGDALQAELVPDGFQAA
Sbjct:    1 MLSCSAVVRILVACVLVVDRSLEVRAAAEPSSGGDRRDTTLAGLAAETQEVVFEDLPEGFHDDIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWGQSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWGHMPFSPRGFFQXXXXXXXXXXXXXXXXXXXXXXDDIAGSTSGVPANTTFVQVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETQFRRGPWYQVTCGQWTTCGIRKHDGGVECWGVKTLNKTGAFYEEVSSADFHTCAVDENGEVECWGDALQAELVPDGFQAA 330
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BLAST of Ec-00_001110.1 vs. uniprot
Match: A0A7S2SKA4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA4_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.690e-30
Identity = 147/286 (51.40%), Postives = 177/286 (61.89%), Query Frame = 1 
Query:  157 FEDLPEGFHDDIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWGQSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWGHMPFSPRGFFQXXXXXXXXXXXXXXXXXXXXXXDDIAGSTSGVPANTTFVQVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETQFRRGPWYQVTCGQWTTCGIRKHDGGVECWG-VKTLNKTGAF---YEEVSSADFHTCAVDENGEVECWG----DALQAELVPDGFQAA 990
            F+ L EGF+ D+D    + G  HTCALE RP V+FGG VRCWG ++ GQ+ P   +F+QVS+G+  TCGI++D+TV+CWG M  +      XXXXXXXXXXXXXXXXXXXXXX  +  +              XXXXXXXXXXXXXXXXXXXXXXXX                  XXXXXXXXXXXXXXXXXXXX  T  R+GP+ QV+ G   TC IR  DG +ECWG V  L+ T      +E+V+S   HTC ++ N E+ CWG    D   A  VP  F  A
Sbjct:   34 FDRLEEGFYADLDGTAASAGFFHTCALEMRPSVEFGGVVRCWGFNEHGQASPPPGVFIQVSSGHLFTCGIRMDETVACWGAMSQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHVPATNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPTSSQFKQVSASSFNHXXXXXXXXXXXXXXXXXXXXQSTN-RKGPFAQVSAGNKVTCAIRDSDGHIECWGAVNRLSTTEDLPHEWEQVTSGFHHTCGINANSELSCWGPTFKDVESAIAVPGNFLVA 318
[Close]
BLAST of Ec-00_001110.1 vs. uniprot
Match: A0A7S1UCR5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCR5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.830e-26
Identity = 123/307 (40.07%), Postives = 154/307 (50.16%), Query Frame = 1 
Query:  115 TTLAGLAAETQEVVFEDLPEGFHDDIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWGQSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWGHM-PFSPRGFFQXXXXXXXXXXXXXXXXXXXXXXDDIAGSTSG---VPANTTFVQVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETQFRRGPWYQVTCGQWTTCGIRKHDGGVECWG-----VKTLNKTGAF----YEEVSSADFHTCAVDENGEVECWGD--ALQAELVPDGFQAA 990
            T LA ++A   +  F +LPEGFH D+D ++V+VG +H CA+EY      GGP+RCWG +  GQS P    F+QVSAG  HTC + +DQT+ CWG + P   R    XXXXXXXXXXXXXXXXXXXXXX    G  S               XXXXXXXXXXXXXXXXX                                              E   R G + QVT G+   CG+R  D  +ECWG     +   N+  A     +++VS  +   C V+ +GEV CWG   A+    VP+G  AA
Sbjct:   13 TALAAMSAVQPDGTFTELPEGFHADLDEVSVSVGEYHACAIEYDETQPMGGPLRCWGGNTEGQSDPPGGTFMQVSAGAMHTCALSVDQTIECWGRVEPHDRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRGLGSNEDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPDFDRLDVPMGVQFKQVSASTYYNSCGVTLDGDIRCWGFKRATKGEVDDRPGSFKQVTSGRRHNCGLRADDHSLECWGKISGHLVIQNQVEAVRSARWDQVSLGNSFACGVNLDGEVLCWGSPSAIGETNVPEGLLAA 319
[Close]
BLAST of Ec-00_001110.1 vs. uniprot
Match: A0A067D4P3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D4P3_SAPPC)

HSP 1 Score: 95.5 bits (236), Expect = 5.950e-19
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:  181 HDDIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWGQSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWG 396
            H DID  TV+ G  HTCA+      DFGG V CWG D  GQ+ P D  F+QVS+G  HTCG+K+D+TV+CWG
Sbjct:   27 HVDIDDTTVSAGISHTCAIHSVSAADFGGKVLCWGDDSMGQASPPDAEFIQVSSGRFHTCGVKLDETVACWG 98
[Close]
BLAST of Ec-00_001110.1 vs. uniprot
Match: A0A1V9YN74_9STRA (Uncharacterized protein n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN74_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.970e-18
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:  154 VFEDLPEGFHDDIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWGQSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWG 396
            +F   P   H DID  TV+ G  HTCA+      DFGG V CWG D  GQS P D  F+QVS G  H+CG+K+D+TV CWG
Sbjct:   44 LFGRSPAIQHLDIDDTTVSAGIGHTCAIHSVSAADFGGKVLCWGEDMLGQSSPPDAEFIQVSCGRFHSCGVKLDETVECWG 124
[Close]
BLAST of Ec-00_001110.1 vs. uniprot
Match: A0A1W0A4G8_9STRA (Uncharacterized protein n=2 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4G8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 9.940e-17
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:  121 LAGLAAETQEVVFEDLPEGFHDDIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWGQSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWG 396
            LA LA        ED+ E  H DID  TV+ G  H+CA+      DFGG V CWG +  GQ+   D  F+QVS+G  H+CG+K+D+T+ CWG
Sbjct:   10 LAALAVIVYGEDVEDVIE--HVDIDDTTVSAGIEHSCAIHSVSAADFGGKVICWGSNSMGQAEAPDAEFIQVSSGRFHSCGVKLDETIECWG 99
[Close]
BLAST of Ec-00_001110.1 vs. uniprot
Match: A0A835Z3U7_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3U7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 8.390e-15
Identity = 101/239 (42.26%), Postives = 119/239 (49.79%), Query Frame = 1 
Query:  322 IFVQVSAGNRHTCGIKIDQTVSCWGHMPFSPRGFFQXXXXXXXXXXXXXXXXXXXXXXDDIAGSTS----------------GVPANTTFVQVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETQFRRGPWYQVTCGQWTTCGIRKHDGGVECWGVKTLNKTGAFYEEVSSADFHTCAVDENGEVECWGDALQAELVPDGFQAA 990
            +FVQ+SAG  HTCG+K+DQT++CWG    +P G +QXXXXXXXXXXXXXXXXXXXXXXD+  G                               XXXXXXXXXXXXXXXXXXXX                                           E   R GP+ QV+CG ++TC I   D    CWG    +  G FYE V  A  H C +  +G ++CWG A  AE VPDGFQ A
Sbjct:    1 MFVQLSAGTSHTCGVKVDQTLACWGAFRGAPGGLYQXXXXXXXXXXXXXXXXXXXXXXDNAFGKCRHPGGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASPTGHACGVTVAAAAVTGKSGSKSGNGGGGDVVCWGRNFDGEAAPRAGPFRQVSCGAYSTCAISAVDDTAACWGATRTSSRGPFYELVI-AHAHACGIGADGGLQCWGSASGAERVPDGFQVA 238
[Close]
BLAST of Ec-00_001110.1 vs. uniprot
Match: A0A225VBP5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VBP5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 8.740e-15
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  187 DIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWGQSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWG 396
            DID  ++A G  H+CA+  +   D GG V CWG ++ GQS P    F+QVS G  H+CGI+ID+T+ CWG
Sbjct:   31 DIDETSIAAGIEHSCAIHTQSYEDVGGRVVCWGVNNGGQSTPPPGDFIQVSTGRLHSCGIRIDETLECWG 100
[Close]
BLAST of Ec-00_001110.1 vs. uniprot
Match: A0A0P1B0Z2_PLAHL (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0Z2_PLAHL)

HSP 1 Score: 84.0 bits (206), Expect = 8.840e-15
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:  121 LAGLAAETQEVVFEDLPEG---FHDDIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWGQSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWG 396
            L   AA++ +   EDL         DID  ++A G  H+CA+  +   D GG V CWG ++ GQS P    F+QVS+G  H+CGI+ID+TV CWG
Sbjct:   10 LVTTAADSYDAAVEDLATSAVFVSLDIDETSIAAGIEHSCAIYTQSYDDVGGRVVCWGVNNGGQSSPPAGKFIQVSSGRLHSCGIRIDETVECWG 104
[Close]
BLAST of Ec-00_001110.1 vs. uniprot
Match: H3GQG3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQG3_PHYRM)

HSP 1 Score: 82.0 bits (201), Expect = 1.430e-14
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:  187 DIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWGQSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWG 396
            DID  ++A G  H+CA++ +   D GG V CWG ++ GQS P    F+QVS G  H+CGI+ID+T+ CWG
Sbjct:   35 DIDETSIAAGIEHSCAIQTQSYEDVGGRVVCWGVNNGGQSSPPPGDFIQVSTGRLHSCGIRIDETLECWG 104
The following BLAST results are available for this feature:
BLAST of Ec-00_001110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LE65_ECTSI7.480e-170100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2SKA4_9STRA3.690e-3051.40Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S1UCR5_9STRA2.830e-2640.07Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A067D4P3_SAPPC5.950e-1955.56Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9YN74_9STRA5.970e-1851.85Uncharacterized protein n=2 Tax=Achlya hypogyna Ta... [more]
A0A1W0A4G8_9STRA9.940e-1745.65Uncharacterized protein n=2 Tax=Thraustotheca clav... [more]
A0A835Z3U7_9STRA8.390e-1542.26Regulator of chromosome condensation 1/beta-lactam... [more]
A0A225VBP5_9STRA8.740e-1548.57Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A0P1B0Z2_PLAHL8.840e-1543.16Regulator of chromosome condensation 1/beta-lactam... [more]
H3GQG3_PHYRM1.430e-1448.57Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1381362..1384941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score488.4
Seed ortholog evalue2.6e-135
Seed eggNOG ortholog2880.D8LE65
Length993
Hectar predicted targeting categorysignal peptide
Gene idEc-00_001110.1
EggNOG free text desc.flower morphogenesis
EggNOG OGs2QUN0@2759,COG0515@1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001110Ec-00_001110Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1381362..1384941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001110.1Ec-00_001110.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1381362..1384941 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001110.1.6Ec-00_001110.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1381362..1381502 -
Ec-00_001110.1.5Ec-00_001110.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1382047..1382121 -
Ec-00_001110.1.4Ec-00_001110.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1382764..1382857 -
Ec-00_001110.1.3Ec-00_001110.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1383286..1383419 -
Ec-00_001110.1.2Ec-00_001110.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1383802..1384017 -
Ec-00_001110.1.1Ec-00_001110.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1384609..1384941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001110.1CDS:Ec-00_001110.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1381362..1381502 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001110.1 ID=Ec-00_001110.1|Name=Ec-00_001110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=331bp
MLSCSAVVRILVACVLVVDRSLEVRAAAEPSSGGDRRDTTLAGLAAETQE
VVFEDLPEGFHDDIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWG
QSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWGHMPFSPRGFFQQLSVGGH
HTCGLRREGTAACWGDDIAGSTSGVPANTTFVQVVAGKDNSCGLRPNGQV
DCWGGNKAGQSSPPRDVQFRQLSASNSRHICGLTLERDIRCWGRDMRGET
QFRRGPWYQVTCGQWTTCGIRKHDGGVECWGVKTLNKTGAFYEEVSSADF
HTCAVDENGEVECWGDALQAELVPDGFQAA*
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spliced messenger RNA

>Ec-00_001110.1 ID=Ec-00_001110.1|Name=Ec-00_001110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=993bp|location=Sequence derived from alignment at chr_00:1381362..1384941- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTCCTGTTCCGCTGTGGTTCGGATCTTGGTCGCTTGCGTTCTCGT
CGTAGATCGGTCGCTGGAGGTTCGAGCGGCGGCTGAACCATCATCAGGAG
GCGATCGACGAGACACCACCCTCGCCGGCCTAGCAGCCGAAACGCAGGAG
GTCGTCTTCGAGGATCTTCCCGAGGGATTTCACGATGACATTGATTCCAT
TACCGTAGCCGTTGGAGGGCATCACACGTGCGCCTTGGAATATCGGCCCG
GCGTTGATTTCGGCGGGCCGGTGCGATGCTGGGGGAGGGATGATTGGGGA
CAATCGATGCCGTCCGACGATATATTCGTCCAGGTCAGCGCTGGCAACCG
CCACACTTGCGGGATCAAGATCGACCAGACGGTATCCTGTTGGGGACACA
TGCCCTTCTCCCCTCGAGGGTTTTTTCAGCAGCTCAGTGTCGGGGGGCAT
CACACTTGCGGCCTTCGAAGGGAGGGGACGGCCGCGTGCTGGGGGGATGA
CATCGCTGGGAGTACGTCCGGGGTGCCGGCAAACACCACATTTGTCCAGG
TTGTAGCCGGTAAGGACAACAGCTGCGGTTTGCGTCCAAACGGGCAAGTT
GACTGCTGGGGAGGGAACAAAGCGGGTCAAAGTTCTCCCCCACGGGACGT
CCAGTTCCGACAACTCTCTGCCTCCAATAGTCGGCATATCTGTGGCTTGA
CGTTGGAGAGAGATATCCGGTGCTGGGGTAGAGATATGCGAGGAGAGACG
CAGTTCCGACGTGGGCCATGGTACCAGGTGACCTGCGGCCAGTGGACAAC
ATGTGGAATAAGAAAACACGATGGAGGGGTAGAGTGCTGGGGGGTGAAAA
CGCTGAACAAGACAGGCGCCTTCTACGAGGAGGTGTCTTCGGCAGATTTT
CACACGTGTGCTGTGGACGAGAACGGCGAGGTGGAATGCTGGGGGGACGC
GCTACAGGCCGAGCTCGTTCCCGACGGCTTCCAGGCTGCTTAG
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protein sequence of Ec-00_001110.1

>Ec-00_001110.1 ID=Ec-00_001110.1|Name=Ec-00_001110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=331bp
MLSCSAVVRILVACVLVVDRSLEVRAAAEPSSGGDRRDTTLAGLAAETQE
VVFEDLPEGFHDDIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWG
QSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWGHMPFSPRGFFQQLSVGGH
HTCGLRREGTAACWGDDIAGSTSGVPANTTFVQVVAGKDNSCGLRPNGQV
DCWGGNKAGQSSPPRDVQFRQLSASNSRHICGLTLERDIRCWGRDMRGET
QFRRGPWYQVTCGQWTTCGIRKHDGGVECWGVKTLNKTGAFYEEVSSADF
HTCAVDENGEVECWGDALQAELVPDGFQAA*
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mRNA from alignment at chr_00:1381362..1384941-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001110.1 ID=Ec-00_001110.1|Name=Ec-00_001110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3580bp|location=Sequence derived from alignment at chr_00:1381362..1384941- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTGTCCTGTTCCGCTGTGGTTCGGATCTTGGTCGCTTGCGTTCTCGT
CGTAGATCGGTCGCTGGAGGTTCGAGCGGCGGCTGAACCATCATCAGGAG
GCGATCGACGAGACACCACCCTCGCCGGCCTAGCAGCCGAAACGCAGGAG
GTCGTCTTCGAGGATCTTCCCGAGGGATTTCACGATGACATTGATTCCAT
TACCGTAGCCGTTGGAGGGCATCACACGTGCGCCTTGGAATATCGGCCCG
GCGTTGATTTCGGCGGGCCGGTGCGATGCTGGGGGAGGGATGATTGGGGA
CAATCGATGCCGTCCGACGATATATTCGTCCAGGTGCGATCAGGTTGCTT
GGATCAAACTTTTGCTTGTACCGCTATTCCTGGGAACCTCGCCTGCATTA
GCGTTAGTCTGAACTATATATTGCATGGTCCATGGGGCATCTCCGTAGGT
TTTCCAATGTTGCTTGTGGCAAAAAACATGTATAAGTAGAGCAGTACATG
CAAGTACGGGTTCGGGTTGGGAGAGTACAGAGTGAAACACCGTGTGCGTA
CATACAGTTAACGTCGTTTTCCTTGACTTGACCGGGAGTGGAAGGTTAGG
TATGACATGTGGCATGTTTCCGTCAAGAGCGGACCAACAGCAAGCAAGTA
TTCGCGATACACTTGTAGTTGGGTCCCGGAGACAACAAACGCCAGTTTTC
GGTCGAGGTCCGATCTGTGATGTTGGGCCAAAACACCAGCCAATGTCGTT
GATATTCCTATCATGAAGTTGTCTTCTGCAGTCCTGTTACGTGGAAAACT
CTCTGCTGACTTTAACCTTTTGTACTTGAACAACGTAAAATCTGGTGCGA
AATATGTAAGTACCGATGAGCTTTAAGGCGAAGTCACCTCACACAAACAC
ACAACCATGCATACATCCAATTAGGTCAGCGCTGGCAACCGCCACACTTG
CGGGATCAAGATCGACCAGACGGTATCCTGTTGGGGACACATGCCCTTCT
CCCCTCGAGGGTTTTTTCAGCAGCTCAGTGTCGGGGGGCATCACACTTGC
GGCCTTCGAAGGGAGGGGACGGCCGCGTGCTGGGGGGATGACATCGCTGG
GAGTACGTCCGGGGTGCCGGCAAACACCACATTTGTCCAGGTGTGGGTAG
AGCTAAAACACGGGGCAGGGGGCGCGCGAAACGGAGATGGGGGGAAGGCG
TCACATAATCGTTACCCTTCATGCCCTGTCTCGTCAGCGATGACTCTGGG
AGGGCAGTGGTAGCCTGCCGTGCTCTAACTCGGACCAATGTGCGAAGGAG
GGGTCCTAGGGAAAGTTGCGCAGCCCCGTCTCCCAATAACGAAATAACAC
TCGTAGTACAGATTCGTTTTCGATAGTCTCCCGATGTCGGGAAAAACAAA
GACGTAGGCCTGTAGCATGCCGCTGGCACCGAATCAGGACAGACTTTCGT
ATTACGCTGATTTGGAAGAACCGGATTCATCATGTTGAGGTCACCTCTTC
ATTCATTTGCTTTCCTGGCTAGGTTGTAGCCGGTAAGGACAACAGCTGCG
GTTTGCGTCCAAACGGGCAAGTTGACTGCTGGGGAGGGAACAAAGCGGGT
CAAAGTTCTCCCCCACGGGACGTCCAGTTCCGACAACTCTCTGCCTCCAA
TAGTCGGTGAGTTTATCTAGGGAGGTAGTGGTGCAGAGAACGACCATGTT
GGCTGTGGGGTTGCTGCTCTTTTGCGATAACATGCACCGCAGAATCCATC
GCTGGCATTGGCACTACAACAGACCGTGTGGCTACGTCTGTTTCAACGAG
GATGGGGAGAGACCAGTGACCTCTTTTGTGCTTTGAACTGCTTCGAATGC
GTGTTCTACAGTAGTTGTTGGTCGGTCCCAGTTCGGCTATTGTATAGGTG
GCACGAGAAAATCCTTTCCAGCAACAACCATGTCGGGGTCTTGCTCGTTG
GGTGCAGCCGGAGTCCTGATGAACCTACGACACCAACCACATCATCTCTG
TACAACCATTTTATTGGAAAAACACAAACACGACGGCAAGCACTAAAACG
CGCTCGGCGTGCTTGTTTCTCCCCTGTATTTCAGGCATATCTGTGGCTTG
ACGTTGGAGAGAGATATCCGGTGCTGGGGTAGAGATATGCGAGGAGAGAC
GCAGTTCCGACGTGGGCCATGGTACCAGGTGTGTACTATCTTTCGGGCTA
CCGTCTGCGCCTCTAAGAACATACATGGTCTGAACCAAGGTTAGCTTTGG
CGGTAGACCAATGAAGAGTGGAGGTCCACCAATAATCGTGAAGGCCCCCA
AGGCGTCGAAGTTGATTCTGACCCCAAACGTATACGGCTTCTCGCCTTAG
AGCGGACAAATATCATAGTCTCGCATTGAGTCGTTAATTTACACGTAGGA
CCGCCTTGTCATGTCGCACATACATCTGAAATTCACCGTTTCCCGTAGGA
GATAACACGTTGCACGTGCCGGTACAGCATCATGTGCCATCGTTTGAAAA
ACTGTGACGTTCTTGAACAAGACGAATCGACAACAGCAGAGGGGAGCTTG
GGGCGCATCGTGCTGTTCCTAGGTAGCACGTTGCGCGCGCCGGTATGCCG
TTACGGTAGCCCTAACCGTCGTGTGTCGTCTATTGAATCGAGACATATAT
GTTGTGAGGTTGTTGGACGAGGTGAGCCAACACCAACAAGGGAGCTTGGG
GCGCATCGGGCTGATCCTAGAGTGAGATTCCGTTTCGCTTGACAATCTCA
TTTGTTTGTAGCGTTGTGCACTGAAGAACACCCCCCTCAGAAACGTTTGC
AATTCCTTACGGTGGATTAGGTGACCTGCGGCCAGTGGACAACATGTGGA
ATAAGAAAACACGATGGAGGGGTAGAGTGCTGGGGGGTGAAAACGGTAAG
TACACCAGTAGGGAACATGCAGACATAACTTTGTGTGGTGGGGGCATCAA
TGCAATCCATGGAGTCGGAGAATTTGTGAACTGCGCGTTCTGGAAGTTAA
TCATCTTGGACTTTGTGCCATAGGCATTCGCACCGCCTTGTCACGTGTGA
AAAGCAAGCTTGACCACGAAGAAAAAATTACTAATATATTCTCTACTGTA
GGCGGTTGGGAGCTGGAAGGGGGGGCTACACCACACAAAATCGTTAAGTG
CGAGCGACGTGTTTGTACACCATTTCTGTTGGGGTTGCACCACTTGTTGT
TCTCCACGTCGCTCTCGGACGTCACATGCAGTCCGGGCGCATCGAGAGGC
ATCGGAAACGTTATGCGCCGTGCTCTCAGCACTGGGGAACATCAGTGCAA
GACCACCAACCCAGCGTGTCCCCACCAACACAAGAATCATTCTGCGATCG
TTCAGATTGCGAAAGTTCTGTTCACGTCTTCCTTGTATATGTCCAGTTCC
TGATGCCACGGTTACCTTGATAATGTCCCGACGATGCAGCTGAACAAGAC
AGGCGCCTTCTACGAGGAGGTGTCTTCGGCAGATTTTCACACGTGTGCTG
TGGACGAGAACGGCGAGGTGGAATGCTGGGGGGACGCGCTACAGGCCGAG
CTCGTTCCCGACGGCTTCCAGGCTGCTTAG
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Coding sequence (CDS) from alignment at chr_00:1381362..1384941-

>Ec-00_001110.1 ID=Ec-00_001110.1|Name=Ec-00_001110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=993bp|location=Sequence derived from alignment at chr_00:1381362..1384941- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTGTCCTGTTCCGCTGTGGTTCGGATCTTGGTCGCTTGCGTTCTCGT
CGTAGATCGGTCGCTGGAGGTTCGAGCGGCGGCTGAACCATCATCAGGAG
GCGATCGACGAGACACCACCCTCGCCGGCCTAGCAGCCGAAACGCAGGAG
GTCGTCTTCGAGGATCTTCCCGAGGGATTTCACGATGACATTGATTCCAT
TACCGTAGCCGTTGGAGGGCATCACACGTGCGCCTTGGAATATCGGCCCG
GCGTTGATTTCGGCGGGCCGGTGCGATGCTGGGGGAGGGATGATTGGGGA
CAATCGATGCCGTCCGACGATATATTCGTCCAGGTCAGCGCTGGCAACCG
CCACACTTGCGGGATCAAGATCGACCAGACGGTATCCTGTTGGGGACACA
TGCCCTTCTCCCCTCGAGGGTTTTTTCAGCAGCTCAGTGTCGGGGGGCAT
CACACTTGCGGCCTTCGAAGGGAGGGGACGGCCGCGTGCTGGGGGGATGA
CATCGCTGGGAGTACGTCCGGGGTGCCGGCAAACACCACATTTGTCCAGG
TTGTAGCCGGTAAGGACAACAGCTGCGGTTTGCGTCCAAACGGGCAAGTT
GACTGCTGGGGAGGGAACAAAGCGGGTCAAAGTTCTCCCCCACGGGACGT
CCAGTTCCGACAACTCTCTGCCTCCAATAGTCGGCATATCTGTGGCTTGA
CGTTGGAGAGAGATATCCGGTGCTGGGGTAGAGATATGCGAGGAGAGACG
CAGTTCCGACGTGGGCCATGGTACCAGGTGACCTGCGGCCAGTGGACAAC
ATGTGGAATAAGAAAACACGATGGAGGGGTAGAGTGCTGGGGGGTGAAAA
CGCTGAACAAGACAGGCGCCTTCTACGAGGAGGTGTCTTCGGCAGATTTT
CACACGTGTGCTGTGGACGAGAACGGCGAGGTGGAATGCTGGGGGGACGC
GCTACAGGCCGAGCTCGTTCCCGACGGCTTCCAGGCTGCTTAG
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Synonyms
The feature 'Ec-00_001110.1' has the following synonyms
Synonym
Esi0013_0036
Esi_0013_0036