Ec-00_001100.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001100.1
Unique NameEc-00_001100.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length227
Homology
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BLAST of Ec-00_001100.1 vs. uniprot
Match: A0A6H5KAX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAX4_9PHAE)

HSP 1 Score: 482 bits (1240), Expect = 1.410e-166
Identity = 240/245 (97.96%), Postives = 244/245 (99.59%), Query Frame = 1 
Query:   76 MGLLSRACLVLWLTPTHSFMAVPPIASRKRVTTQLHSGEDGRIPPSPETLRARAAAIREELKELEANAAATRRPNAELAEPKRVVPFPETLLDSCWKIVMDLRGVKSDKNRVPVRLVFCCKFAEDDFILEVESDNRFVKRGYVWEPDRNNDEDKEFITFIAEVEGLSAVPDGRIFMNAFIDKIEGDDGKTRYKFSEGAVTIKEVIDKSFWGVFNTAGLLAEFKVVGTWDASPIDALPEKKSSPEK 810
            MGLLSRACLVLWLTPTHSFMAVPPIA+RKRVTTQLHSGEDGRIPPSPETLRARAAAIREELKELEANAAATRRPNAELAEPKRVVPFPETLLDSCWKIVMDLRGVKSDKNRVPVRLVFCCKFAE+DFILEVESDNRFVKRGYVWEPDRN+DEDKEFITFIAEVEGLSAVPDGRIFMN FIDKIEGDDGKTRYKFSEGAVTIKEVIDKSFWGVFNTAGLLAEFKVVGTWDASPIDALPEK+SSPEK
Sbjct:    1 MGLLSRACLVLWLTPTHSFMAVPPIAARKRVTTQLHSGEDGRIPPSPETLRARAAAIREELKELEANAAATRRPNAELAEPKRVVPFPETLLDSCWKIVMDLRGVKSDKNRVPVRLVFCCKFAEEDFILEVESDNRFVKRGYVWEPDRNDDEDKEFITFIAEVEGLSAVPDGRIFMNGFIDKIEGDDGKTRYKFSEGAVTIKEVIDKSFWGVFNTAGLLAEFKVVGTWDASPIDALPEKQSSPEK 245
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BLAST of Ec-00_001100.1 vs. uniprot
Match: A0A836CMB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB8_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.410e-22
Identity = 54/117 (46.15%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:  436 KFAEDDFILEVESDNRFVKRGYVWEPDRNNDEDKEFITFIAEVEGLSAVPDGRIFMNAFIDKIEGDDGKTRYKFSEGAVTIKEVIDKSFWGVFNTAGLLAEFKVVGTWDASPIDALP 786
            +F+ DD IL V +    + RGY+W PDR  D ++ +I F   V+GLSAVPDG++++NA +D+   DD    YK S+G +TIKEV ++  +G+F+ AG+LAEFKVVG + A+P+  +P
Sbjct:   71 RFSSDDNILLVSAGTPAITRGYIWAPDR--DANRTYIAFDIGVKGLSAVPDGKLYLNARVDQ---DDATGGYKLSDGVLTIKEVDNRRGFGLFSFAGILAEFKVVGEFVATPLREMP 182
The following BLAST results are available for this feature:
BLAST of Ec-00_001100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAX4_9PHAE1.410e-16697.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMB8_9STRA2.410e-2246.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1377266..1380903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1721
Hectar predicted targeting categoryother localisation
Gene idEc-00_001100.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001100Ec-00_001100Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1377266..1380903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001100.1Ec-00_001100.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1377399..1379996 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001100.1.1Ec-00_001100.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1377266..1377590 +
Ec-00_001100.1.2Ec-00_001100.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1378298..1378467 +
Ec-00_001100.1.3Ec-00_001100.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1379014..1379147 +
Ec-00_001100.1.4Ec-00_001100.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1379812..1380903 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0011005UTR:Ec-00_001100.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1377266..1377398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001100.1CDS:Ec-00_001100.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1377399..1377590 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0011003UTR:Ec-00_001100.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1379997..1380903 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001100.1 ID=Ec-00_001100.1|Name=Ec-00_001100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=227bp
MAVPPIASRKRVTTQLHSGEDGRIPPSPETLRARAAAIREELKELEANAA
ATRRPNAELAEPKRVVPFPETLLDSCWKIVMDLRGVKSDKNRVPVRLVFC
CKFAEDDFILEVESDNRFVKRGYVWEPDRNNDEDKEFITFIAEVEGLSAV
PDGRIFMNAFIDKIEGDDGKTRYKFSEGAVTIKEVIDKSFWGVFNTAGLL
AEFKVVGTWDASPIDALPEKKSSPEK*
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spliced messenger RNA

>Ec-00_001100.1 ID=Ec-00_001100.1|Name=Ec-00_001100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1721bp|location=Sequence derived from alignment at chr_00:1377266..1380903+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGTCTATAGCAGTATCACACCAGACCCACACGCCACGGAGCCACTCGCTG
CGGTATCACCGTTCACCCCCGTGGCCATGGGCCTACTCTCCCGTGCCTGC
TTAGTGCTATGGCTGACACCCACTCACTCGTTCATGGCAGTGCCTCCGAT
CGCTTCACGAAAACGAGTAACAACTCAATTGCATAGCGGTGAGGACGGTC
GAATACCACCTTCGCCAGAAACGCTTAGGGCGCGAGCTGCTGCGATACGT
GAAGAGCTCAAGGAACTCGAGGCAAACGCAGCGGCAACCAGGCGACCCAA
CGCCGAGCTAGCGGAACCGAAGCGGGTGGTTCCGTTTCCAGAGACTCTGC
TTGACAGCTGTTGGAAGATCGTGATGGATCTTCGCGGTGTGAAGAGTGAC
AAGAACCGAGTACCGGTCCGTCTGGTGTTCTGCTGCAAGTTCGCTGAGGA
TGATTTCATTCTCGAAGTCGAAAGCGACAATCGCTTCGTGAAACGGGGGT
ACGTCTGGGAGCCCGATCGAAACAACGACGAGGACAAAGAGTTCATCACG
TTCATCGCAGAAGTGGAAGGGTTGTCGGCGGTTCCTGACGGGAGGATCTT
CATGAACGCTTTCATCGACAAGATCGAAGGGGACGATGGCAAGACCAGGT
ACAAATTCAGCGAGGGAGCCGTGACTATCAAGGAGGTGATCGACAAGTCG
TTCTGGGGGGTGTTCAACACGGCGGGATTGCTGGCGGAGTTCAAGGTCGT
TGGCACCTGGGACGCTTCTCCCATCGATGCCTTGCCCGAAAAAAAGTCGT
CGCCTGAAAAGTAAAAAGCGGGTGGGAGACTGGTCATCTACGGCGTTCTC
TGCCCAGCATGAAAGGTTTTTAACCGACATCGAAGAAGGTTGTTCGTGGC
TTTTTCCGGGTGCACAGGGCACAGAAGTTATTTTTTCACCACCAAGTATC
CCCCCTCGGGTAACATTGAGGCTGGCCGGGCCGTAGAGAGTGGCACTTGG
ATTGGATGGAATTGAATGGAAAGTTCCTTGCTCTGCCTGTTCGAAGCAGT
GGCACCAGGCACTTGGCAAGTCTCGTGGTGTAAGCGGTGCGATAAACCGT
GCGAACCATCCCAACGGTTTCCTGGTGTATTTAGCGGGGGGGGTGGGGCT
TGCATCGGCCATCGAAGCTCCGACCTGAAGTAGAGTGAGTAAGTTCTTAG
AGGAGAGGTAGTGCAGGATGAGGGCAGCCAGCGGACCATGTTCTCGTTGT
GGATTACCTGAGACACTTTAAAACACTTGAAAGCGCCCTCGGGGTAACGA
TGCCCGCGCTGCTTTTCGTAAACGTCGTTGTGTAATGTATCCCTGTAATG
AAGACGTAGAATTGTGGTGCTCGATTTTACTTCGGCATCGCCAAGATGCT
CGTAGTATTTAGCGGTATATGTATTTGTGTTCAGAGCGGGCATGTAGTAC
AAAGCTTGCGTGGTTATACCCTCTGACTCGACTGGGTAGATCGTTTGTGC
GCTTGAGACCTCGTTGAAGTTGAGCAAGGGTTATGTTTTCGGGCTACAGG
CCGATACGGCACCCGCTTTGTATTTGGTTGACGGTGTGTTGCTGGCCTGC
GACCTCTTTGAAGTTGAGCGAGGCTTATGTTTTGGGGCTACGGTACCGAT
ACGGCGCCCGATTTGTGTTTGACTGACGGTATGTTGCTGGCCAATATCAG
AAAATATGAGAATCTGTACCC
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protein sequence of Ec-00_001100.1

>Ec-00_001100.1 ID=Ec-00_001100.1|Name=Ec-00_001100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=227bp
MAVPPIASRKRVTTQLHSGEDGRIPPSPETLRARAAAIREELKELEANAA
ATRRPNAELAEPKRVVPFPETLLDSCWKIVMDLRGVKSDKNRVPVRLVFC
CKFAEDDFILEVESDNRFVKRGYVWEPDRNNDEDKEFITFIAEVEGLSAV
PDGRIFMNAFIDKIEGDDGKTRYKFSEGAVTIKEVIDKSFWGVFNTAGLL
AEFKVVGTWDASPIDALPEKKSSPEK*
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mRNA from alignment at chr_00:1377266..1380903+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001100.1 ID=Ec-00_001100.1|Name=Ec-00_001100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3638bp|location=Sequence derived from alignment at chr_00:1377266..1380903+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGTCTATAGCAGTATCACACCAGACCCACACGCCACGGAGCCACTCGCTG
CGGTATCACCGTTCACCCCCGTGGCCATGGGCCTACTCTCCCGTGCCTGC
TTAGTGCTATGGCTGACACCCACTCACTCGTTCATGGCAGTGCCTCCGAT
CGCTTCACGAAAACGAGTAACAACTCAATTGCATAGCGGTGAGGACGGTC
GAATACCACCTTCGCCAGAAACGCTTAGGGCGCGAGCTGCTGCGATACGT
GAAGAGCTCAAGGAACTCGAGGCAAACGCAGCGGCAACCAGGCGACCCAA
CGCCGAGCTAGCGGAACCGAAGCGGGTGAGTGCACGTCAGAAGACGTGGG
TCGCCGGTTGCATTGCGTACGTACGTCGCCGCCTGTGTCGTGACAACGTG
ACAACGAGACGCTACACTAGCCTACACGTGTGGTCCACGACATCGGGGTG
CGTGTGTTCATGAGAACATATGGTAGTAGAACATGGCCCTCGAAGTCTTC
CTTGTTCTTGTGGCACTAGGATCCGGGACCGAGGCACCGAGGCGCCGCTT
TGGAATTTGGAACATTCGAAGACATGCGGCGTAATTACAGGCCGGGCGTC
GAACAGCCTGACTGCTCTTGAAGCTCGCTGTCTCGCGCGCGTTGTAGCGG
GAGCATTAGGTAGACTGTAGACTACAGGTAAATCCTTTTGCAGCGATTCC
CTCCAAAAGTTCAACGTTCCACACCATCCATCATCTATATCCTTCTCCAC
AAGTAGGACGGCTACATGGTGTTACTGTTGGCAATCAACCAAATTTACTA
GATTTGCGTACTGTACATGAAAGAGTCAACGCGCCAACAGCGGTACTACT
CTATTGTACGTATGTACGTGTGCATATGCAGTTCGGGATCTGAGACATCT
GTTTGCTTTCTTGTGGCAACAGGGTGCTATCTTGTGTTGCGTGCATAACG
ACGTGTTCGAGATCCGCACTCGTGCATGATAAAGGGCAAGACGGAGTAAC
CCGAACTTACATACTTTTGTCTATGCTCGCAGGTGGTTCCGTTTCCAGAG
ACTCTGCTTGACAGCTGTTGGAAGATCGTGATGGATCTTCGCGGTGTGAA
GAGTGACAAGAACCGAGTACCGGTCCGTCTGGTGTTCTGCTGCAAGTTCG
CTGAGGATGATTTCATTCTCGAAGTCGAAAGCGACAATCGCTTCGTGAAA
CGGTACGTACGTGAAAGCCTATTGGGCGGACACGCAATTCTGTGTTGAAA
CCTAGGACGAGATGTAAGCTGTAAACCGTCCGGTATTTTCTAGGTCGGCA
CCGCCCACTAGGTTCAGCGCATGCGCTACGCAAGACGTAACACTATTGTC
GGTGATGCAAAATTTGCCCAGTAGGGCATGCATCTTCATACATACGGCCT
CCAATCTCGATTTACAAGTTTGAAAACAACGAACATAAAGACCAACGATG
AGGTGGCACGTGCGATCGGGCGTCTGCATGAACAATGCCCCCCGACAATC
CTTGCTTTCGTTGGGAAGTTGTACGACGAGCGTATAATACGGTATTCCTA
GGAAATGGTAGATGTGCATGTACGCTATTGGGTGACGACCTCCAGCCTCG
ATCGTGGCCCTGGCTGTGGCATCTTTCGCGGTGTTGAAATTTCCTGTAGT
TTTCGCTATCGAGCAATGGGCCCTTCAAGGCCGAGACGAGCTTTGGCCCC
GTCTCCAATCCACGTGTCTGCGCCTCCTCACAATGCGCCTATTTGCAGGG
GGTACGTCTGGGAGCCCGATCGAAACAACGACGAGGACAAAGAGTTCATC
ACGTTCATCGCAGAAGTGGAAGGGTTGTCGGCGGTTCCTGACGGGAGGAT
CTTCATGAACGCTTTCATCGACAAGATCGAAGGTGAAGAAAGGTTTCACG
TGCAGACCTATTGATTCCTACCACCTACCACACATTGTGCCTGTTCTTCA
TCCGAACCATCAAAGGTGGGTTGTTTTACCAGAAGAGCGCTCCTTGCAAT
GCCCTCAAAGGTGATTTATATACTTGCATATTATAAGTCGTGGGAAGATA
CACATCTATCTTGGTTGCTATTTGCGGTAGTAGCAGATTTGGTCTTAGGC
CGGGCTGTCTTAGAGCGTCGGACGTTACAATAAATGTTGCCGGCCTTGTG
GTCGCTTGGATGCCTTTTCCATTCCGTCACGGGTGATTCAACCCCCCTGA
GTTTTTGGCGCCGAGTCTCTTTGCTCATTGGTATTTCAATGGGGGCATTT
CTAGTCGTGACAGATCATCTTGTCGCTGCTGCACGGCCGAGGAGATTGCA
GTACCGGTTGGCTCAGGGACGGAACATGACCGGGTGTTCTACCTTCCGTA
CCTTCAACCGATCATGTGAGCTCCGGTTCCCATCCCGGCTGGAGATCGTG
ACAGGGGTCACCCAAATCCGCTGTTGCAACACCTCACCAATCCATGTCGC
CGCTGATACAACACCTCCTGGTGCCACGATGGGCCGTTTTCCGAGTTAAC
ACACTGCCATTCTGTAACGTTCCCGTTCGTCGAACTGCCTTCGCAGGGGA
CGATGGCAAGACCAGGTACAAATTCAGCGAGGGAGCCGTGACTATCAAGG
AGGTGATCGACAAGTCGTTCTGGGGGGTGTTCAACACGGCGGGATTGCTG
GCGGAGTTCAAGGTCGTTGGCACCTGGGACGCTTCTCCCATCGATGCCTT
GCCCGAAAAAAAGTCGTCGCCTGAAAAGTAAAAAGCGGGTGGGAGACTGG
TCATCTACGGCGTTCTCTGCCCAGCATGAAAGGTTTTTAACCGACATCGA
AGAAGGTTGTTCGTGGCTTTTTCCGGGTGCACAGGGCACAGAAGTTATTT
TTTCACCACCAAGTATCCCCCCTCGGGTAACATTGAGGCTGGCCGGGCCG
TAGAGAGTGGCACTTGGATTGGATGGAATTGAATGGAAAGTTCCTTGCTC
TGCCTGTTCGAAGCAGTGGCACCAGGCACTTGGCAAGTCTCGTGGTGTAA
GCGGTGCGATAAACCGTGCGAACCATCCCAACGGTTTCCTGGTGTATTTA
GCGGGGGGGGTGGGGCTTGCATCGGCCATCGAAGCTCCGACCTGAAGTAG
AGTGAGTAAGTTCTTAGAGGAGAGGTAGTGCAGGATGAGGGCAGCCAGCG
GACCATGTTCTCGTTGTGGATTACCTGAGACACTTTAAAACACTTGAAAG
CGCCCTCGGGGTAACGATGCCCGCGCTGCTTTTCGTAAACGTCGTTGTGT
AATGTATCCCTGTAATGAAGACGTAGAATTGTGGTGCTCGATTTTACTTC
GGCATCGCCAAGATGCTCGTAGTATTTAGCGGTATATGTATTTGTGTTCA
GAGCGGGCATGTAGTACAAAGCTTGCGTGGTTATACCCTCTGACTCGACT
GGGTAGATCGTTTGTGCGCTTGAGACCTCGTTGAAGTTGAGCAAGGGTTA
TGTTTTCGGGCTACAGGCCGATACGGCACCCGCTTTGTATTTGGTTGACG
GTGTGTTGCTGGCCTGCGACCTCTTTGAAGTTGAGCGAGGCTTATGTTTT
GGGGCTACGGTACCGATACGGCGCCCGATTTGTGTTTGACTGACGGTATG
TTGCTGGCCAATATCAGAAAATATGAGAATCTGTACCC
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Coding sequence (CDS) from alignment at chr_00:1377266..1380903+

>Ec-00_001100.1 ID=Ec-00_001100.1|Name=Ec-00_001100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=681bp|location=Sequence derived from alignment at chr_00:1377266..1380903+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCAGTGCCTCCGATCGCTTCACGAAAACGAGTAACAACTCAATTGCA
TAGCGGTGAGGACGGTCGAATACCACCTTCGCCAGAAACGCTTAGGGCGC
GAGCTGCTGCGATACGTGAAGAGCTCAAGGAACTCGAGGCAAACGCAGCG
GCAACCAGGCGACCCAACGCCGAGCTAGCGGAACCGAAGCGGGTGGTTCC
GTTTCCAGAGACTCTGCTTGACAGCTGTTGGAAGATCGTGATGGATCTTC
GCGGTGTGAAGAGTGACAAGAACCGAGTACCGGTCCGTCTGGTGTTCTGC
TGCAAGTTCGCTGAGGATGATTTCATTCTCGAAGTCGAAAGCGACAATCG
CTTCGTGAAACGGGGGTACGTCTGGGAGCCCGATCGAAACAACGACGAGG
ACAAAGAGTTCATCACGTTCATCGCAGAAGTGGAAGGGTTGTCGGCGGTT
CCTGACGGGAGGATCTTCATGAACGCTTTCATCGACAAGATCGAAGGGGA
CGATGGCAAGACCAGGTACAAATTCAGCGAGGGAGCCGTGACTATCAAGG
AGGTGATCGACAAGTCGTTCTGGGGGGTGTTCAACACGGCGGGATTGCTG
GCGGAGTTCAAGGTCGTTGGCACCTGGGACGCTTCTCCCATCGATGCCTT
GCCCGAAAAAAAGTCGTCGCCTGAAAAGTAA
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Synonyms
The feature 'Ec-00_001100.1' has the following synonyms
Synonym
Esi0013_0035
Esi_0013_0035