Ec-00_001090.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001090.1
Unique NameEc-00_001090.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length214
Homology
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BLAST of Ec-00_001090.1 vs. uniprot
Match: A0A6H5K800_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K800_9PHAE)

HSP 1 Score: 394 bits (1011), Expect = 8.280e-135
Identity = 197/208 (94.71%), Postives = 201/208 (96.63%), Query Frame = 1 
Query:   73 MATRGLLRYCGLRSATRRLSYYHKGGTSCEPDEELHPNWSGLERRLQSRVPREKGHGVPEGRTNLKPSEEDFWHKAGVYDYSEASSARPSPEVATRGPACARLSTVKVSAENVPRVVALYKTSVAPVLQVKGFCGAQVFSDRATGTVQSLTLWQSWGDLETAVGDSRYAKAMRSLEGLIEAPPDVVDTEVACSILPTTGGGDVSSGDS 696
            MATRGLLRYCG RSATRRLSY+HKGGTSCEPDEELHPNWSGLERRLQSRVPREKGHGVPEGRTNLKPSEEDFWHKAGVYDYSEASS+  SPE+ATR PACARLSTVKVSAENVPRVVALYKTSVAPVLQVKGFCGAQVFSDRA GTVQSLTLWQSWGDLE  VG+SRYAKAMRSLEGLIEAPPDVVDTEVACSILPTTGGGDVSSGDS
Sbjct:    1 MATRGLLRYCGRRSATRRLSYHHKGGTSCEPDEELHPNWSGLERRLQSRVPREKGHGVPEGRTNLKPSEEDFWHKAGVYDYSEASSS--SPEIATREPACARLSTVKVSAENVPRVVALYKTSVAPVLQVKGFCGAQVFSDRAAGTVQSLTLWQSWGDLEEVVGNSRYAKAMRSLEGLIEAPPDVVDTEVACSILPTTGGGDVSSGDS 206
The following BLAST results are available for this feature:
BLAST of Ec-00_001090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K800_9PHAE8.280e-13594.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1373905..1377161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1253
Hectar predicted targeting categorymitochondrion
Gene idEc-00_001090.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001090Ec-00_001090Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1373905..1377161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001090.1Ec-00_001090.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1374443..1377088 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001090.1.5Ec-00_001090.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1373905..1374574 -
Ec-00_001090.1.4Ec-00_001090.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1374994..1375116 -
Ec-00_001090.1.3Ec-00_001090.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1375597..1375682 -
Ec-00_001090.1.2Ec-00_001090.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1375933..1376114 -
Ec-00_001090.1.1Ec-00_001090.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1376970..1377161 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0010903UTR:Ec-00_001090.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1373905..1374442 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001090.1CDS:Ec-00_001090.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1374443..1374574 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0010905UTR:Ec-00_001090.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1377089..1377161 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001090.1 ID=Ec-00_001090.1|Name=Ec-00_001090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=214bp
MATRGLLRYCGLRSATRRLSYYHKGGTSCEPDEELHPNWSGLERRLQSRV
PREKGHGVPEGRTNLKPSEEDFWHKAGVYDYSEASSARPSPEVATRGPAC
ARLSTVKVSAENVPRVVALYKTSVAPVLQVKGFCGAQVFSDRATGTVQSL
TLWQSWGDLETAVGDSRYAKAMRSLEGLIEAPPDVVDTEVACSILPTTGG
GDVSSGDSEEDAL*
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spliced messenger RNA

>Ec-00_001090.1 ID=Ec-00_001090.1|Name=Ec-00_001090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1253bp|location=Sequence derived from alignment at chr_00:1373905..1377161- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGCGGTGCCCCAATACCTGCCGCGTGTGTTGTGTGTACGGAGCATTGCAC
ACTCGAGAGACGCCGCTAGCACGATGGCCACACGCGGTTTGCTACGATAT
TGTGGGCTAAGGAGTGCAACGAGACGGCTCTCGTACTACCACAAAGGCGG
CACGTCGTGCGAACCTGACGAGGAGCTGCACCCGAACTGGAGTGGACTGG
AACGGCGGCTGCAGTCTCGCGTTCCACGCGAAAAGGGTCACGGCGTGCCG
GAGGGCCGGACAAACCTCAAGCCGTCGGAGGAGGACTTCTGGCACAAGGC
TGGAGTGTACGACTATTCCGAGGCATCCTCGGCAAGACCAAGCCCGGAAG
TTGCAACGAGAGGGCCCGCTTGTGCGAGGCTGTCGACGGTGAAGGTCTCC
GCCGAAAACGTTCCTCGAGTAGTCGCTCTCTACAAGACGTCTGTTGCACC
AGTGCTGCAGGTGAAGGGGTTCTGTGGCGCTCAAGTATTTTCAGACAGAG
CTACGGGAACGGTGCAGTCTCTCACCCTGTGGCAGTCATGGGGAGATCTC
GAGACGGCTGTGGGCGACAGCCGCTACGCGAAGGCTATGCGTTCCTTGGA
AGGGCTGATCGAAGCTCCGCCGGACGTTGTCGACACCGAGGTGGCATGCT
CCATCCTCCCCACCACTGGAGGCGGAGACGTGTCGAGCGGCGACTCAGAA
GAAGACGCATTATGATTTTTCTGTTGAAATTTCTTCCATACTTCGTTGAA
CAAGTTTCCGCAGTGGCGTGCTCTTGTTGCAAAGGTTTTCGTCGTGTCCA
ATTTGTCCCACTAGTTTCGGATAAAGGCTGGGAGAATCAAGCCATTCGTG
TGCCAGTCCCTCTTCTCCGGGGGCAGTTTTCTTGTGAATGTTGAAGAGTC
CAAAGTGTTCCCACTTTTTTTGTGCGCGTGCGATTTTCTTTCTTGGGAGA
TGCTTTTCAAGCCGTACATACATACGTAGATTGCGCGAAGACTACATATA
TGCGAAGGATACGAATGCGGCTCGGAACGACTGGGAAGCTAAGACGGATT
ACAGTAGATGGTGCATGTCGTGGAGTGCTTCCGTTGAGTGAGGTGGGCTA
CACGTATGCGTAACAGCGGTTGCGCTCCCCATTTTTTTCTTGGGAAATGT
ATGGGGCGGTGTACTGCTGTACCCTCTACTTCCGTCTCCGCTGTTTCTTC
GTTGTTTCTGCCTGTCTGCTACACTGGCCGGGCCTAGTAGAACTAAGTCA
TTC
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protein sequence of Ec-00_001090.1

>Ec-00_001090.1 ID=Ec-00_001090.1|Name=Ec-00_001090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=214bp
MATRGLLRYCGLRSATRRLSYYHKGGTSCEPDEELHPNWSGLERRLQSRV
PREKGHGVPEGRTNLKPSEEDFWHKAGVYDYSEASSARPSPEVATRGPAC
ARLSTVKVSAENVPRVVALYKTSVAPVLQVKGFCGAQVFSDRATGTVQSL
TLWQSWGDLETAVGDSRYAKAMRSLEGLIEAPPDVVDTEVACSILPTTGG
GDVSSGDSEEDAL*
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mRNA from alignment at chr_00:1373905..1377161-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001090.1 ID=Ec-00_001090.1|Name=Ec-00_001090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3257bp|location=Sequence derived from alignment at chr_00:1373905..1377161- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGCGGTGCCCCAATACCTGCCGCGTGTGTTGTGTGTACGGAGCATTGCAC
ACTCGAGAGACGCCGCTAGCACGATGGCCACACGCGGTTTGCTACGATAT
TGTGGGCTAAGGAGTGCAACGAGACGGCTCTCGTACTACCACAAAGGCGG
CACGTCGTGCGAACCTGACGAGGAGCTGCACCCGAACTGGAGGTATGTAC
AGCAGCAGGTGCAATGCGTCCGCATATGGATGATATCTACAGCACGAGTT
GGCACCAGTTACAACTACAGCAATAACTGCTGTTGATACCGCCGCTGCTT
CTGTCGGACAACATAAGGGTGGCATGGTAACGGTAGTGAACTGCTTCATT
TCATCGGATGTATCGGGGACAAAGGGTAAACAGCAGTGAAACGTATTTGC
TCCTACATTGTAGGCATCAGAAATGTACAGCAACGACAACGAATGCTACA
AGCAGTCGCACCAGGCCGGAGGGCCATGTGGCCATACCCGTTCTGGGAAC
GATGATTCAGTTGTTCCCACTTTAAATTTGTAAGTTGAAGGGGAAAGAGG
CTCCTCTAAGTTCCAATCGGTGTGAGTGATGATAACGTCTCACGTTCGTG
ACCCTTGCCCCGGTCTACAGGGATAGAATTACGCCGCATTGTCTCGTTCC
ACAGCAAGAAACAGCTGGCCCGCTCAGCGCGGTGCCCACAGCCGGCTGAG
AGGCTGACACATCTGACAGTCCCGCCACCCATCCCAGCGGTTGTTTTGCT
TTCCCGCGAGACCCATACCCTCTGGACTAGTGATGGAAACTAAACCTATC
CCACAGAACCCTTAACCTCTGGTCTGGTGATGGAACTAACTAACTCTATC
CCACAAAACCCAACCCTTTGACCTACTATTTAGTGATGAAAACTTACTCT
ATCCCACAGAACCCATCACCTCTAGTGTCGTGATGGAACTAAATAGCTCT
ATCCCACAAAACCCATACCCTTTGGCCTAGGCTAGTGATAGAAACTGTTT
TAACCCCTAGCCCCTCTTCTCTGTGTTACTACCTGTATCGACGGCAGTGG
ACTGGAACGGCGGCTGCAGTCTCGCGTTCCACGCGAAAAGGGTCACGGCG
TGCCGGAGGGCCGGACAAACCTCAAGCCGTCGGAGGAGGACTTCTGGCAC
AAGGCTGGAGTGTACGACTATTCCGAGGCATCCTCGGCAAGACCAAGCCC
GGAAGTTGCAACGAGAGGGCCCGCTTGTGGTGAGCAGCACTCGGGGGTGG
GGGTGGTGTTGGTGCATGGGCTCATGCTTGAATCAGAATCACGTGTGTCT
GTCTCCATGTGCCGTCCCTCACGAGCACACACTAGTTTATGGAGTATCTG
CGTCGAAGACACTCACTTATTTTGCTACGATAAGCTGCGCTTTCCCGTCT
ACCCTCCTGAACTGACCTCTCGTAACCTTTCTTTGCCTGACGCAACTCTT
GTGCCACCACGCTTCTCTGGGACGCGCAGCGAGGCTGTCGACGGTGAAGG
TCTCCGCCGAAAACGTTCCTCGAGTAGTCGCTCTCTACAAGACGTCTGTT
GCACCAGTGCTGCAGGTCGGTTGTTGTCGTGCTTGATTGTCTGTAAGGCT
CGCGGATCGAGGGCCGACAGTTCGCATGATACGCGGCACACGGAACATAC
TCTGGTGTTACACAGCGAAACGCCTGGAAAGCACGGTTTGTTGTGTGAAA
ATTTAGCGGAGAGTAGCACTGCATTGCTCGCTGCGCCCGTTGTGCCTGGT
ACGAAGTAGCATTGTTCGTCTCATTTTCGCTGCCAAACTCGCTAGAGAGC
ATGTGCAACGCCGGGACACACCTAGCCGCGCAGCAGCATGCGGTCGCTTG
GCCTACAGGCGAAGGGGTTTATTGGTGCGCGAGCGTGGCCGTAGGGATGT
TCCTGCTGTGCTGCCTAACGATCCTATGCGTACCACATCAAGTAGTAGCG
CATCCCTTGCAGTCGGTATGCTGCAGGCAATTTTTTCTCTAGTCTGCAGA
GCTGTTGAGCAGTCGCGCGCCATGTCCATCCGTTTTTCGGTTCAGGTGAA
GGGGTTCTGTGGCGCTCAAGTATTTTCAGACAGAGCTACGGGAACGGTGC
AGTCTCTCACCCTGTGGCAGTCATGGGGAGATCTCGAGACGGCTGTGGGC
GACAGCCGCTACGCGAAGGTAGCGCTGCCTTAATTTGCCTTAGTAAGACG
TACATTGAGCTGCCTTAATTTGCCTTGATTAGACAGACGTACGTACATTG
AGAGGAGGGAAAGACGTGTGTACTATCTTCTACTTTTGCTTGGTGTGCGC
CAGGCTTGACTCGCTGCTGCTGGTCTTGGTGGTCCACAAAGCTTGCCGCG
ATAACGAGTGCGGGTGCGTTCCAAAGAAGGTGCTCGACGAGCCAGTTTCG
CCAATACCCTCCAAGACTGCTCGTGTTCCGGAGTTGGTCTTGACACGTCC
TTTCTGGATGTGTGGGTGCCCTGCCCGCACCCAGCTTACAAAAATGTCGG
CGTCGTTGTCGAAAAACAGTTGTTATTATTGGCACCATTCCTCCTGCGGT
TGACCACGCATTATTTTTGTGTGGTTGTATGTTTCAGGCTATGCGTTCCT
TGGAAGGGCTGATCGAAGCTCCGCCGGACGTTGTCGACACCGAGGTGGCA
TGCTCCATCCTCCCCACCACTGGAGGCGGAGACGTGTCGAGCGGCGACTC
AGAAGAAGACGCATTATGATTTTTCTGTTGAAATTTCTTCCATACTTCGT
TGAACAAGTTTCCGCAGTGGCGTGCTCTTGTTGCAAAGGTTTTCGTCGTG
TCCAATTTGTCCCACTAGTTTCGGATAAAGGCTGGGAGAATCAAGCCATT
CGTGTGCCAGTCCCTCTTCTCCGGGGGCAGTTTTCTTGTGAATGTTGAAG
AGTCCAAAGTGTTCCCACTTTTTTTGTGCGCGTGCGATTTTCTTTCTTGG
GAGATGCTTTTCAAGCCGTACATACATACGTAGATTGCGCGAAGACTACA
TATATGCGAAGGATACGAATGCGGCTCGGAACGACTGGGAAGCTAAGACG
GATTACAGTAGATGGTGCATGTCGTGGAGTGCTTCCGTTGAGTGAGGTGG
GCTACACGTATGCGTAACAGCGGTTGCGCTCCCCATTTTTTTCTTGGGAA
ATGTATGGGGCGGTGTACTGCTGTACCCTCTACTTCCGTCTCCGCTGTTT
CTTCGTTGTTTCTGCCTGTCTGCTACACTGGCCGGGCCTAGTAGAACTAA
GTCATTC
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Coding sequence (CDS) from alignment at chr_00:1373905..1377161-

>Ec-00_001090.1 ID=Ec-00_001090.1|Name=Ec-00_001090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=642bp|location=Sequence derived from alignment at chr_00:1373905..1377161- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCACACGCGGTTTGCTACGATATTGTGGGCTAAGGAGTGCAACGAG
ACGGCTCTCGTACTACCACAAAGGCGGCACGTCGTGCGAACCTGACGAGG
AGCTGCACCCGAACTGGAGTGGACTGGAACGGCGGCTGCAGTCTCGCGTT
CCACGCGAAAAGGGTCACGGCGTGCCGGAGGGCCGGACAAACCTCAAGCC
GTCGGAGGAGGACTTCTGGCACAAGGCTGGAGTGTACGACTATTCCGAGG
CATCCTCGGCAAGACCAAGCCCGGAAGTTGCAACGAGAGGGCCCGCTTGT
GCGAGGCTGTCGACGGTGAAGGTCTCCGCCGAAAACGTTCCTCGAGTAGT
CGCTCTCTACAAGACGTCTGTTGCACCAGTGCTGCAGGTGAAGGGGTTCT
GTGGCGCTCAAGTATTTTCAGACAGAGCTACGGGAACGGTGCAGTCTCTC
ACCCTGTGGCAGTCATGGGGAGATCTCGAGACGGCTGTGGGCGACAGCCG
CTACGCGAAGGCTATGCGTTCCTTGGAAGGGCTGATCGAAGCTCCGCCGG
ACGTTGTCGACACCGAGGTGGCATGCTCCATCCTCCCCACCACTGGAGGC
GGAGACGTGTCGAGCGGCGACTCAGAAGAAGACGCATTATGA
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Synonyms
The feature 'Ec-00_001090.1' has the following synonyms
Synonym
Esi0013_0034
Esi_0013_0034