Ec-00_001030.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001030.1
Unique NameEc-00_001030.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length68
Homology
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BLAST of Ec-00_001030.1 vs. uniprot
Match: D8LE57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE57_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 3.380e-39
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 MVLEKLVHAAPTKRVIAMAVGGYLTTGAAILYLSQINSSMPDTMRAEWHAATEDYRRYQNMDRVRSS 201
            MVLEKLVHAAPTKRVIAMAVGGYLTTGAAILYLSQINSSMPDTMRAEWHAATEDYRRYQNMDRVRSS
Sbjct:    1 MVLEKLVHAAPTKRVIAMAVGGYLTTGAAILYLSQINSSMPDTMRAEWHAATEDYRRYQNMDRVRSS 67
The following BLAST results are available for this feature:
BLAST of Ec-00_001030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE57_ECTSI3.380e-39100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1339249..1341257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length204
Hectar predicted targeting categoryother localisation
Gene idEc-00_001030.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001030Ec-00_001030Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1339249..1341257 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001030.1.1Ec-00_001030.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1339249..1339310 +
Ec-00_001030.1.2Ec-00_001030.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1340034..1340086 +
Ec-00_001030.1.3Ec-00_001030.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1340439..1340503 +
Ec-00_001030.1.4Ec-00_001030.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1341234..1341257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001030.1CDS:Ec-00_001030.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1339249..1339310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001030.1Ec-00_001030.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1339249..1341257 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001030.1 ID=Ec-00_001030.1|Name=Ec-00_001030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=68bp
MVLEKLVHAAPTKRVIAMAVGGYLTTGAAILYLSQINSSMPDTMRAEWHA
ATEDYRRYQNMDRVRSS*
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spliced messenger RNA

>Ec-00_001030.1 ID=Ec-00_001030.1|Name=Ec-00_001030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=204bp|location=Sequence derived from alignment at chr_00:1339249..1341257+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTGGAGAAGCTCGTGCATGCCGCCCCTACGAAGAGGGTCATCGC
GATGGCCGTGGGAGGCTACCTCACTACCGGCGCTGCGATCTTGTACCTGT
CCCAGATTAATTCGAGCATGCCTGACACAATGCGCGCCGAGTGGCACGCC
GCCACGGAGGACTACCGCCGATACCAAAACATGGACCGCGTTCGTTCCTC
CTGA
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protein sequence of Ec-00_001030.1

>Ec-00_001030.1 ID=Ec-00_001030.1|Name=Ec-00_001030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=68bp
MVLEKLVHAAPTKRVIAMAVGGYLTTGAAILYLSQINSSMPDTMRAEWHA
ATEDYRRYQNMDRVRSS*
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mRNA from alignment at chr_00:1339249..1341257+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001030.1 ID=Ec-00_001030.1|Name=Ec-00_001030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2009bp|location=Sequence derived from alignment at chr_00:1339249..1341257+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGCTGGAGAAGCTCGTGCATGCCGCCCCTACGAAGAGGGTCATCGC
GATGGCCGTGGGGTAAGCCCACACCTTGTGAAATCTAGCGAGAAAAGTGA
GATCCAAGCGCCACGCCGTATTCGTACAATGTCCATGGCTGGCTTCAGCG
GCCTCAGTGGTTGAGATCGATATTGTATGTATGTCCATAGACTGCTGTAG
GCGGGTGCGTGGTGGGTGACTGCGAGAAAAGAATGTGTGTGTGTGTCTAC
ACAGCAGTATCATATCTCCGTGTGGGAGAATGTCAATCGCGGATCGTACC
CAGTTTTTGTTGATGTGTCGAAAGTTATTTCCTGGTCCTCGTCTGTGTGT
CGCACCATTAGTCTACAAAGCTTCGTACACCCTGATTTTGTTCTCTGGTG
TTTGGTACGCGTTTTATGGGTTCCCAGACGAAAAAGCCTGCCGACGGCCG
TGCAATCTCGAGGCACGATCAGCACTCTGACTGAGACCACAAGGCGTATA
CGTTTGCCGTGCTGTTTTTGTTGTGTCGCCTTTCGCGCCTTCTCGGTTTA
GTTTCTCCATGTTACCCTCCCTGGCATTGTGCAAGAGCACCCAGGCATGC
GAAGCTGGGAATACCCCACCACTTATTTTTTACCCACCACCACCTACCTA
ACCTAAACTTAGAAGAGCATGCGAATTAATTAAATCGAACGTTGACGTTG
CTGATCCATCGATCTCACCATATGTCACTGACTGCCACCACCCCCTTGAC
CTTATACCTTCGTCTCGTTGTGCTTCGCAACACAGAGGCTACCTCACTAC
CGGCGCTGCGATCTTGTACCTGTCCCAGATTAATTCGAGTGAGTGTCATC
GGCCAAACTCTTTATTGGACAGATCCGTCGCGAGTTGCGAAGGGGTGTGC
AGGTGGCAGCTCAAATTCAATTAGTCTCCGCGAACACTGTTGTTTCTGTA
TACGGCTTTCAAATCCGACGAAAAAAGTATTACCACGCGGCTTTCACTCA
AGGGAACAGATTATCTGCGCAATAATGCGAAGAAGGGGGGCGCCTCCAGA
TGCACCTCACGTCGGCTGGGCATCCATGCCTGTCGTTCGAGTGTGACCCA
CTTATTGTAGGCTGCTATTCCTACCCTTGCTCATCTGAAACCGTGCTCGC
CGTCGCTCAAAATTCTGCTTCCCTGCTACCTCCTGTACAGGCATGCCTGA
CACAATGCGCGCCGAGTGGCACGCCGCCACGGAGGACTACCGCCGATACC
AAAACGTGAGAACTCGGCTAAGCAAGCCCTGGTGGCGGGCTCGATCATAT
CCTGTTTTGTGTCAGAATGCGCGGCAGTTGAGGCCTGTTCCCGCGGACAG
TACTATATATGGACTCGAATATTGGGTGTAGGACATGTCTTGTTCATTCC
ACCACCTTTACATTAGAGGACGTGAGAATTCGTTGTTTAGTTGGCCAAAC
TCTACAAGATATACATTGCGGCCCTTCCCCTCGCACAGGGCCAATTGACA
CTTTTCTTCAGGGGGGATAGTTTCGTCCTTCCGATGTTTGGTTCCAAGCT
TGAATCCTGATCAAGGAAGGCCAGCTCTGTCGCGCCGAGTTAGAACATTT
TAGTCTATGGGCGTAAAATCGTGTGCTCCGCTGCATAACGTCAATATTGG
TGTTGTCCACTTAGAAACACAGTTTCGTAGACCCAGCGCAATAAGGACAT
GTTTGCGTCCCGGATGAGGTCCGGCCAAGAGACCCAAACGATGCTGCAGC
CTCTCAAGGCCCACCAAAGCTTAAGCATCGACCGAGGAAGGCAGGCGCGT
TGTACTGTACATAAGCGGTCAGTACTTGGGCAACAATTCTTAGCTGGAAC
TTTCGATACTTTCGAACGAAAGCTGGTGCACAACTCTATCGGCAGCTTTG
CACATAAACGTGTTACCCATACCCATTGTGTCCGCAAACATCATCTTGGT
CGTTCCGATCAACTACCCTGCGTGCTCGTTTGCAGATGGACCGCGTTCGT
TCCTCCTGA
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Coding sequence (CDS) from alignment at chr_00:1339249..1341257+

>Ec-00_001030.1 ID=Ec-00_001030.1|Name=Ec-00_001030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=204bp|location=Sequence derived from alignment at chr_00:1339249..1341257+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGCTGGAGAAGCTCGTGCATGCCGCCCCTACGAAGAGGGTCATCGC
GATGGCCGTGGGAGGCTACCTCACTACCGGCGCTGCGATCTTGTACCTGT
CCCAGATTAATTCGAGCATGCCTGACACAATGCGCGCCGAGTGGCACGCC
GCCACGGAGGACTACCGCCGATACCAAAACATGGACCGCGTTCGTTCCTC
CTGA
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Synonyms
The feature 'Ec-00_001030.1' has the following synonyms
Synonym
Esi0013_0025
Esi_0013_0025