Ec-00_000990.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000990.1
Unique NameEc-00_000990.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length409
Homology
[Close]
BLAST of Ec-00_000990.1 vs. uniprot
Match: A0A6H5K3A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A1_9PHAE)

HSP 1 Score: 537 bits (1383), Expect = 9.670e-182
Identity = 341/429 (79.49%), Postives = 350/429 (81.59%), Query Frame = 3 
Query:  132 MKLIEECTAGISNGVAGSPEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLCCLDPDFRQRVISCLPGLMALDEVPVVRSSRGAGVEECKGAIEDNQLPLEDEREDDNGGVVTLYVTVHSDGQSHIVPFHFSPTGNTAQQLQQASRFCTENGLHGDDDKRNLAGQMEEAIAGLKARHISTGRVISDSERDSEEAHRKGPDRTDRHETDARLHAIVRLQKARARVMEESTTSFEQ-------------------------------HKKLLLAATRKLVEQKTAAAHGRSDALEEDITKILEDARAELQLRRARVSAENRRFATDMREKVERVLADRRQESQSVVGARAVAISPK 1325
            MKLIEECTAGIS GVAGSPEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                               N CCLDPDFRQRVISCLPGLMALDEVP+VRSSR AGVEECKG IED+QLPLEDEREDDNGGVVTL+VTVHSDGQSH VPFHF PT NTAQQLQQASRFCTENGLHGDDDKRNLA QMEEAIAGLKARH STGR ISDSER SEEA+RKGPDRTDRHETDARL AIVRLQKARARVMEESTTSFEQ                               HKKLLLAATRKLVE+KTAAAH RS+ALEEDITKILEDAR ELQLRRARVSAEN RFATDM+EKVERVLADRRQE QS++G RAVAISPK
Sbjct:    1 MKLIEECTAGISTGVAGSPEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVLDLSANVIEDFDTQELPPALVILNLSS--NPCCLDPDFRQRVISCLPGLMALDEVPLVRSSRAAGVEECKGTIEDSQLPLEDEREDDNGGVVTLHVTVHSDGQSHNVPFHFCPTENTAQQLQQASRFCTENGLHGDDDKRNLADQMEEAIAGLKARHTSTGRGISDSERASEEANRKGPDRTDRHETDARLDAIVRLQKARARVMEESTTSFEQVATKHMRHNCLVCVTIFLELNDVVAFLLIMKHKKLLLAATRKLVERKTAAAHSRSNALEEDITKILEDARTELQLRRARVSAENMRFATDMKEKVERVLADRRQEFQSLMGVRAVAISPK 427
[Close]
BLAST of Ec-00_000990.1 vs. uniprot
Match: D8LE54_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE54_ECTSI)

HSP 1 Score: 444 bits (1143), Expect = 3.610e-147
Identity = 329/398 (82.66%), Postives = 329/398 (82.66%), Query Frame = 3 
Query:  132 MKLIEECTAGISNGVAGSPEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLCCLDPDFRQRVISCLPGLMALDEVPVVRSSRGAGVEECKGAIEDNQLPLEDEREDDNGGVVTLYVTVHSDGQSHIVPFHFSPTGNTAQQLQQASRFCTENGLHGDDDKRNLAGQMEEAIAGLKARHISTGRVISDSERDSEEAHRKGPDRTDRHETDARLHAIVRLQKARARVMEESTTSFEQHKKLLLAATRKLVEQKTAAAHGRSDALEEDITKILEDARAELQLRRARVSAENRRFATDMREKVERVLADRRQESQSVVGARAVAISPK 1325
            MKLIEECTAGISNGVAGSPEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLCCLDPDFRQRVISCLPGLM                                                                     QLQQASRFCTENGLHGDDDKRNLAGQMEEAIAGLKARHISTGRVISDSERDSEEAHRKGPDRTDRHETDARLHAIVRLQKARARVMEESTTSFEQHKKLLLAATRKLVEQKTAAAHGRSDALEEDITKILEDARAELQLRRARVSAENRRFATDMREKVERVLADRRQESQSVVGARAVAISPK
Sbjct:    1 MKLIEECTAGISNGVAGSPEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLCCLDPDFRQRVISCLPGLM---------------------------------------------------------------------QLQQASRFCTENGLHGDDDKRNLAGQMEEAIAGLKARHISTGRVISDSERDSEEAHRKGPDRTDRHETDARLHAIVRLQKARARVMEESTTSFEQHKKLLLAATRKLVEQKTAAAHGRSDALEEDITKILEDARAELQLRRARVSAENRRFATDMREKVERVLADRRQESQSVVGARAVAISPK 329
[Close]
BLAST of Ec-00_000990.1 vs. uniprot
Match: A0A6G0XIB7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIB7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.540e-7
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 3 
Query:  117 PRSLTMKLIEECTAGISNGVAGSPEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHN 308
            P  + M LI +C     +    + +E A+ LL   VLRLDWQRI  I+NLD+F+H+RELYLQHN
Sbjct:   22 PAKINMLLIRKCMNLTRDS---TDDEEASQLLLKTVLRLDWQRIGKIENLDVFSHIRELYLQHN 82
[Close]
BLAST of Ec-00_000990.1 vs. uniprot
Match: A0A662WQZ2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQZ2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.690e-6
Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 3 
Query:   90 SMLKMVDDEPRSLTMKLIEECTAGISNGV-----AGSPEE--RAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHN 308
            S + + ++ P  LTM+LI    A           AG  EE  + A LL+ +VLRLDW  I  I+NLD FTH++ELYLQHN
Sbjct:   47 SQMPLENERPAQLTMELIRASVAASKQSTKQQRPAGPEEEDRQIAALLRKKVLRLDWLDIGRIENLDAFTHVQELYLQHN 126
[Close]
BLAST of Ec-00_000990.1 vs. uniprot
Match: A0A485LBW6_9STRA (Aste57867_19032 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBW6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.360e-6
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 3 
Query:  117 PRSLTMKLIEECTAGISNGVAGSPEERAAD---LLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHN 308
            P  + M+LI +C   +  G   + ++  A+   LLK   LRLDW  I  I+NLD+F+H+RELYLQHN
Sbjct:   17 PTKINMQLIRKCM-NLPRGPTSADDDPDAEVDALLKKTTLRLDWLNIGKIENLDVFSHIRELYLQHN 82
[Close]
BLAST of Ec-00_000990.1 vs. uniprot
Match: A0A024TZL3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZL3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.790e-6
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 3 
Query:  114 EPRSLTMKLIEECTAGISNGVAGSPEERAAD---LLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHN 308
            +P  + M+LI +C +   +  A + ++  A+   LL   VLRLDWQ I+ I+NLD+F+H+R+LYLQHN
Sbjct:   25 QPVRINMQLIRKCMSLPPSAHATAVDDDDAEVESLLAKTVLRLDWQGISKIENLDVFSHIRDLYLQHN 92
[Close]
BLAST of Ec-00_000990.1 vs. uniprot
Match: A0A1V9Z8K7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8K7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 9.010e-6
Identity = 33/74 (44.59%), Postives = 41/74 (55.41%), Query Frame = 3 
Query:  102 MVDDEPRSLTMKLIEEC-----TAGISNGVAGSPEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHN 308
            M  D    LTM+L+ +       + I  G  G   E+   LL    LRLDW  I  I+NLD+FTH+RELYLQHN
Sbjct:    1 MASDGSAKLTMQLVRKSMQVQPASSIDGGDGGDEVEQ---LLSRRTLRLDWLNIGKIENLDVFTHIRELYLQHN 71
[Close]
BLAST of Ec-00_000990.1 vs. uniprot
Match: W4GAS4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GAS4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.460e-5
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 3 
Query:  117 PRSLTMKLIEECTA--------GISNGVAGSPEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHN 308
            P  + M+LI +C +           NG     +   A +L   VLRLDWQ IA I++LD+F H+R+LYLQHN
Sbjct:   26 PVKIAMQLIRKCMSMPHAAAPPSTDNGHDXXXDAEVASMLTKPVLRLDWQGIAKIEHLDVFCHVRDLYLQHN 97
[Close]
BLAST of Ec-00_000990.1 vs. uniprot
Match: T0R6H2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R6H2_SAPDV)

HSP 1 Score: 57.8 bits (138), Expect = 2.720e-5
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 3 
Query:  105 VDDEPRSLTMKLIEECT-----AGISNGVAGSPEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHN 308
            ++  P  LTM+LI +         I +G+A   +E    LL   VLRLDW  I  I+NLD FTH+RELYLQHN
Sbjct:    1 MEPTPVKLTMQLIRKSMQLRPETAIDDGLAVEGDE-VEHLLTRNVLRLDWLGIGKIENLDAFTHVRELYLQHN 72
[Close]
BLAST of Ec-00_000990.1 vs. uniprot
Match: A0A1W0ACD8_9STRA (Leucine-rich repeat-containing protein 46 isoform X1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACD8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.400e-5
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 3 
Query:  189 EERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHN 308
            ++   +LLK  VLRLDW  ++ I+NLD FTH+RELYLQHN
Sbjct:   22 DDEVENLLKRSVLRLDWLNVSKIENLDAFTHIRELYLQHN 61
The following BLAST results are available for this feature:
BLAST of Ec-00_000990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5K3A1_9PHAE9.670e-18279.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE54_ECTSI3.610e-14782.66Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6G0XIB7_9STRA1.540e-750.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A662WQZ2_9STRA1.690e-645.00Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A485LBW6_9STRA5.360e-644.78Aste57867_19032 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TZL3_9STRA7.790e-644.12Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9Z8K7_9STRA9.010e-644.59Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W4GAS4_9STRA1.460e-541.67Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
T0R6H2_SAPDV2.720e-546.58Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1W0ACD8_9STRA4.400e-560.00Leucine-rich repeat-containing protein 46 isoform ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1294362..1298663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score448.4
Seed ortholog evalue3.7e-123
Seed eggNOG ortholog2880.D8LE54
Length2483
Hectar predicted targeting categoryother localisation
Gene idEc-00_000990.1
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000990Ec-00_000990Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1294362..1298663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000990.1Ec-00_000990.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1295516..1298561 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000990.1.7Ec-00_000990.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1294362..1295686 -
Ec-00_000990.1.6Ec-00_000990.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1295952..1296050 -
Ec-00_000990.1.5Ec-00_000990.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1296439..1296723 -
Ec-00_000990.1.4Ec-00_000990.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1297022..1297228 -
Ec-00_000990.1.3Ec-00_000990.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1297595..1297747 -
Ec-00_000990.1.2Ec-00_000990.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1298133..1298349 -
Ec-00_000990.1.1Ec-00_000990.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1298467..1298663 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0009903UTR:Ec-00_000990.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1294362..1295515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000990.1CDS:Ec-00_000990.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1295516..1295686 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0009905UTR:Ec-00_000990.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1298562..1298663 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000990.1 ID=Ec-00_000990.1|Name=Ec-00_000990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=409bp
MVDDEPRSLTMKLIEECTAGISNGVAGSPEERAADLLKVEVLRLDWQRIA
SIQNLDIFTHLRELYLQHNRIHVIEELDTLRNLEFLALGSNRIRRLENLR
HLRKLQVLDLSANVIEDFDTQELPPALVILNLSSNLCCLDPDFRQRVISC
LPGLMALDEVPVVRSSRGAGVEECKGAIEDNQLPLEDEREDDNGGVVTLY
VTVHSDGQSHIVPFHFSPTGNTAQQLQQASRFCTENGLHGDDDKRNLAGQ
MEEAIAGLKARHISTGRVISDSERDSEEAHRKGPDRTDRHETDARLHAIV
RLQKARARVMEESTTSFEQHKKLLLAATRKLVEQKTAAAHGRSDALEEDI
TKILEDARAELQLRRARVSAENRRFATDMREKVERVLADRRQESQSVVGA
RAVAISPK*
back to top

spliced messenger RNA

>Ec-00_000990.1 ID=Ec-00_000990.1|Name=Ec-00_000990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2483bp|location=Sequence derived from alignment at chr_00:1294362..1298663- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GGGCAGAGAGCAGAGCGAGAGAGCGCCGAGGAGAGACGGGAGAGAGACGA
GTACCTGAACATAAGCCACGCACGCAACGAGCTTCATATTCAATGCTCAA
GTATGGTCGACGATGAGCCACGAAGTCTAACCATGAAACTGATTGAAGAG
TGCACCGCCGGCATATCCAACGGGGTCGCCGGGAGTCCTGAAGAAAGGGC
TGCAGACTTGCTCAAGGTGGAAGTGCTGCGGCTCGATTGGCAAAGGATCG
CGAGCATCCAGAATCTAGACATATTCACGCACCTTCGGGAGCTTTACCTT
CAACACAACAGGATCCACGTTATCGAGGAACTTGATACACTCCGAAATCT
AGAATTTCTGGCTCTCGGCTCGAACCGAATTCGTCGACTGGAGAACCTTC
GGCATCTCCGCAAGCTGCAGGTACTGGACTTGTCCGCCAACGTTATCGAA
GACTTCGACACGCAAGAGCTACCACCTGCGCTCGTCATTCTTAACCTGTC
GAGCAACCTGTGCTGCCTTGATCCCGATTTCCGGCAAAGGGTTATTTCGT
GTCTTCCAGGTCTCATGGCCCTGGACGAGGTGCCAGTGGTGCGGTCTTCG
CGAGGTGCTGGGGTAGAAGAATGTAAGGGGGCGATAGAGGATAATCAGCT
GCCCCTGGAAGACGAGAGAGAGGACGACAACGGTGGCGTGGTGACCCTCT
ACGTTACCGTGCACTCGGACGGCCAATCGCACATTGTTCCATTTCACTTC
AGTCCAACAGGAAATACGGCACAGCAACTTCAGCAAGCATCACGCTTTTG
TACCGAAAACGGCCTACACGGCGATGACGACAAGAGGAACTTGGCAGGGC
AAATGGAGGAGGCCATCGCCGGGCTAAAGGCTCGCCACATTTCTACAGGA
CGCGTTATCTCCGATAGTGAACGGGATTCCGAGGAGGCCCACCGCAAGGG
CCCCGACCGCACCGATCGTCATGAAACGGATGCAAGACTGCATGCGATTG
TCCGTCTCCAGAAAGCGCGTGCTCGTGTGATGGAGGAGTCGACAACGTCT
TTCGAGCAGCACAAGAAGCTTCTACTGGCTGCTACACGGAAGCTAGTCGA
GCAGAAGACGGCTGCAGCACACGGCCGCTCCGACGCGTTGGAGGAAGACA
TAACCAAGATTCTGGAAGACGCACGTGCAGAGCTGCAGCTTCGTCGAGCA
AGGGTATCAGCAGAAAACAGGCGGTTTGCGACGGACATGAGGGAGAAGGT
TGAGAGGGTGTTGGCTGACAGACGCCAAGAATCTCAATCGGTGGTGGGAG
CGCGAGCGGTCGCCATATCTCCGAAATAAAATCAACACCTGGGACACACG
CCCTTCTCAGGGGTGGGGTCAACAACACGTCTAAGTTGTTCTATCGGCGT
GGGCACTCACCAGAACCAGGTGCGGCCTTTTCGACATGACTTGGCCGCCA
GTAATTTTCCACTGTGTTCTGGAAACTGAATCTCTAGCTTGGCACTATGA
AGAGCTAGTGTAGGGCGGCGCTGCTTGAGATGGGGTGGTGAAATCGGATT
TTTACCATTGGCGGTACTTGCAAAGTAGCGGCGATGGCTTTGCGGTGGTA
AATGAGGAAGTTACGATGTTTCCCGACGCTTCTTGTCTTAATTCGTTGGT
GGTTTATGACGGTGGTAACCACCTGAGCATGCCTAGGGGCTCCATGTGTA
GAACAGATTTCATGTAGCCACAATGATCGACAATTTTTCGAGTGCTTGGA
TGAGATCTTGTTGACAAAGTCATGTTGTTTGGCGGTGCCTCTATAAGTGC
TTGACGCGCACGGTGTCCGACACCAGCAGTTGTCGCCAAACCACCACTTA
CAATAAATACAAGCCGAACGCCCGGTCTACGGCCGACGACTGCAGGGCAC
AGTCTTTCTCCTCAAGCATTAGAAAAAATGTAAAACGCCGAGTGGAGCTC
AGCTAGCTATGCGTAGGTGCGTTGAGTTTCGGCCTTCGTCTTGCAAGACT
GAGGGAGGAACGGTGAGAAGTCGGTTATTTATTGTTCGTGGAGGAACCGG
TTCTCGAGAGGATTGTTTCTGCACAGAGGCTTGCCTGATGCCCGGTTGTA
CCAGTGTATTTACAGGTTGCCGGTGGTTTTCCGCCGCTGTTGTGGTTGTA
TTGCCACATTGCAGGCATATCGTATGCACTGTATGTATGTGTTGTATGTA
TGTATGTAGTATGTATGTATGTGTGTTCGTCCATTTGGCACATTCTTCTT
CAATATGCCCATCTTTTGAAGCTCCAACTACGGGCACCTGTGCGTGGTTG
TGATTCCCACCTCAATGAATACGGTGTGCATCGGATCTGAACGAACGATA
GTCCTAGGGAGTGTTCAACAGTTCGACAGGCTACGGCAGGAGCTACAACT
CCCCGAGAAACAATATTTAATTGTCGGGACATGCATCTGATTTCGCTATA
GTTTTAGCATTTTGTTTTGGGGAAGGTCATCTG
back to top

protein sequence of Ec-00_000990.1

>Ec-00_000990.1 ID=Ec-00_000990.1|Name=Ec-00_000990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=409bp
MVDDEPRSLTMKLIEECTAGISNGVAGSPEERAADLLKVEVLRLDWQRIA
SIQNLDIFTHLRELYLQHNRIHVIEELDTLRNLEFLALGSNRIRRLENLR
HLRKLQVLDLSANVIEDFDTQELPPALVILNLSSNLCCLDPDFRQRVISC
LPGLMALDEVPVVRSSRGAGVEECKGAIEDNQLPLEDEREDDNGGVVTLY
VTVHSDGQSHIVPFHFSPTGNTAQQLQQASRFCTENGLHGDDDKRNLAGQ
MEEAIAGLKARHISTGRVISDSERDSEEAHRKGPDRTDRHETDARLHAIV
RLQKARARVMEESTTSFEQHKKLLLAATRKLVEQKTAAAHGRSDALEEDI
TKILEDARAELQLRRARVSAENRRFATDMREKVERVLADRRQESQSVVGA
RAVAISPK*
back to top

mRNA from alignment at chr_00:1294362..1298663-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000990.1 ID=Ec-00_000990.1|Name=Ec-00_000990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4302bp|location=Sequence derived from alignment at chr_00:1294362..1298663- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GGGCAGAGAGCAGAGCGAGAGAGCGCCGAGGAGAGACGGGAGAGAGACGA
GTACCTGAACATAAGCCACGCACGCAACGAGCTTCATATTCAATGCTCAA
GTATGGTCGACGATGAGCCACGAAGTCTAACCATGAAACTGATTGAAGAG
TGCACCGCCGGCATATCCAACGGGGTCGCCGGGAGTCCTGAAGAAAGGTA
CAGCAGGGTAGTGTACATACGGAGCAGTGCTATTGCGGTGCAGGCTACGT
ACAGCAATGCAGCTGCCCGATACCAACAACAATCTCACCTAAGCGACGCT
GCCCTCTTCGACAGGGCTGCAGACTTGCTCAAGGTGGAAGTGCTGCGGCT
CGATTGGCAAAGGATCGCGAGCATCCAGAATCTAGACATATTCACGCACC
TTCGGGAGCTTTACCTTCAACACAACAGGATCCACGTTATCGAGGAACTT
GATACACTCCGAAATCTAGAATTTCTGGCTCTCGGCTCGAACCGAATTCG
TCGACTGGAGAACCTTCGGCATCTCCGCAAGGTGAAGGTTTGGGTTCCTC
TCGAGTGTGCATACTGTCCTCCCCACAACACGCAACATCACTCGCGAAAG
CCGCCACTGGCTATCGCCTGCTCTCGCCATAATGTATCGAATAGTCTAGT
GTACATGGCAGTGTTGGACAAGGTCATTTGGGCGACTTCTCCTGGTTGTG
TTGTTGAAGTCGTCATCACGAGGAAACCACACCTCTGATGTCAAGTTTCC
GAACACTCGGTATTCTTCGATATAAAGACACAAGAAGACTTGGGCGGGTA
CCAGGCTATCAAACATTGGGGTATGTTGGAGCTTGCAAAAAACGGTACAA
AATGACCTTGCAGTTGTTGCAAATACGGTGTTGTGTCGTGCTTCATTGTG
ACGCGCATTGCTACAGCTGCAGGTACTGGACTTGTCCGCCAACGTTATCG
AAGACTTCGACACGCAAGAGCTACCACCTGCGCTCGTCATTCTTAACCTG
TCGAGCAACCTGTGCTGCCTTGATCCCGATTTCCGGCAAAGGGTTATTTC
GTGTCTTCCAGGTCTCATGGTGAGTTCGAGATCACACTTGTTTCAAATTT
ACATTCGTTTCTGTAACATGGGAATATGGAAGCACCTGACTCGAGCTCTG
TCGTTGTCTGCGTCCAGGGTCTGCATGTGCGGTAGTCTACACACGGTGTA
CAGCTTCCAAGCTTGTGGCGCTTAGATTGTTTCGTAGATTGACCTGACCT
TCCTTTGAACATTGGCCAGCAGCAGTTGGATTGGTGTTGGGAATTTGCTC
TCGGAATAGATATTTGCGCTTCATCTACCGTAAGAGTCGTAATGATAGTG
TCGACGTATCGTGGTGATGGTGCCTCTTTCAGCGTCAACCAGCCACCGCA
ATCAGCTCCTGGATCTGCCCAACCCCGTACGGTAGGCCCTGGACGAGGTG
CCAGTGGTGCGGTCTTCGCGAGGTGCTGGGGTAGAAGAATGTAAGGGGGC
GATAGAGGATAATCAGCTGCCCCTGGAAGACGAGAGAGAGGACGACAACG
GTGGCGTGGTGACCCTCTACGTTACCGTGCACTCGGACGGCCAATCGCAC
ATTGTTCCATTTCACTTCAGTCCAACAGGAAATACGGCACAGGTATGCAT
AGGAATACACGACACCGAGGAAATAATAATGTGGAAGGCGATCTGCAGTG
CACAGGACTCGCACGCCATAATTGTGTGCGGAGCCAAGGCGACCATCTTA
ACATACGGACCAAGGAAAAAACACCTCGGTTGAGATCTGCGCGAGTTCAA
CGTCAAGAACCCTACACCGCACATTGGAGATGTTTCGTTCAGTATCCATA
GCACCGATGGCTGTATTCCACTTCCGCTGCGGTTTCACGCTGTCATGTTC
GCTGAAAAAATCACGTTTCGTTGCGTCAATGGAACTGCAGCAACTTCAGC
AAGCATCACGCTTTTGTACCGAAAACGGCCTACACGGCGATGACGACAAG
AGGAACTTGGCAGGGCAAATGGAGGAGGCCATCGCCGGGCTAAAGGCTCG
CCACATTTCTACAGGACGCGTTATCTCCGATAGTGAACGGGATTCCGAGG
AGGCCCACCGCAAGGGCCCCGACCGCACCGATCGTCATGAAACGGATGCA
AGACTGCATGCGATTGTCCGTCTCCAGAAAGCGCGTGCTCGTGTGATGGA
GGAGTCGACAACGTCTTTCGAGCAGGTGACTGCTGTATGATTGCCTTCGA
CGAACTCTGCTGTTTGTGTGAGGAGCTCCTAAGTAGCCCTCCGAGATTCA
AGCGTTTATCAGGTTCATGTTACCGCGATGAACATTCTGGAAAAATGGAT
ACCAGAGGTACCTCCAATCTCACGATGTGCAAGAGGAAACAGCGTGCCGC
GTATTGTAGGCGAGATACACACCAGCACAATTTTTGGCAACCCCTGCAAA
GTACGCCTGTCCCTGTCGTCCTTCCCATCTGTAGCTGTCCTTCAGCCGCA
GCCCAACATCGTTCAGGTTGCTACGAAACACATGCGCCATAATTGCTTGA
TGTGTGTGACTATCTTTCTCGAGCTGAACGATACATGTTGTTACTTTTCT
TGTGGCCATGAAGCACAAGAAGCTTCTACTGGCTGCTACACGGAAGCTAG
TCGAGCAGAAGACGGCTGCAGCACACGGCCGCTCCGACGCGTTGGAGGAA
GACATAACCAAGGTAAGGCAAGGTATATCTATCTACGGAATCTTCAAGCA
CTGATTATTCAGCGATCAAGCGTTGCTTTTGACGGGGAGTTTTCTTCCCT
TTGCTTGCCATCTTCACGCGCTGCTGCTTGCCTGTGTACATCACGCTGCA
GCTTTCAACTACCCCAACCTGTCCGTAGACTCTAGATTGGCATTATGCGA
TACTTTTCCGGACCGGCAAGATTGAAGGAACGCCTACAAATATTGAACAT
GCAACACATTTGCTCTGGACTTGACAGATTCTGGAAGACGCACGTGCAGA
GCTGCAGCTTCGTCGAGCAAGGGTATCAGCAGAAAACAGGCGGTTTGCGA
CGGACATGAGGGAGAAGGTTGAGAGGGTGTTGGCTGACAGACGCCAAGAA
TCTCAATCGGTGGTGGGAGCGCGAGCGGTCGCCATATCTCCGAAATAAAA
TCAACACCTGGGACACACGCCCTTCTCAGGGGTGGGGTCAACAACACGTC
TAAGTTGTTCTATCGGCGTGGGCACTCACCAGAACCAGGTGCGGCCTTTT
CGACATGACTTGGCCGCCAGTAATTTTCCACTGTGTTCTGGAAACTGAAT
CTCTAGCTTGGCACTATGAAGAGCTAGTGTAGGGCGGCGCTGCTTGAGAT
GGGGTGGTGAAATCGGATTTTTACCATTGGCGGTACTTGCAAAGTAGCGG
CGATGGCTTTGCGGTGGTAAATGAGGAAGTTACGATGTTTCCCGACGCTT
CTTGTCTTAATTCGTTGGTGGTTTATGACGGTGGTAACCACCTGAGCATG
CCTAGGGGCTCCATGTGTAGAACAGATTTCATGTAGCCACAATGATCGAC
AATTTTTCGAGTGCTTGGATGAGATCTTGTTGACAAAGTCATGTTGTTTG
GCGGTGCCTCTATAAGTGCTTGACGCGCACGGTGTCCGACACCAGCAGTT
GTCGCCAAACCACCACTTACAATAAATACAAGCCGAACGCCCGGTCTACG
GCCGACGACTGCAGGGCACAGTCTTTCTCCTCAAGCATTAGAAAAAATGT
AAAACGCCGAGTGGAGCTCAGCTAGCTATGCGTAGGTGCGTTGAGTTTCG
GCCTTCGTCTTGCAAGACTGAGGGAGGAACGGTGAGAAGTCGGTTATTTA
TTGTTCGTGGAGGAACCGGTTCTCGAGAGGATTGTTTCTGCACAGAGGCT
TGCCTGATGCCCGGTTGTACCAGTGTATTTACAGGTTGCCGGTGGTTTTC
CGCCGCTGTTGTGGTTGTATTGCCACATTGCAGGCATATCGTATGCACTG
TATGTATGTGTTGTATGTATGTATGTAGTATGTATGTATGTGTGTTCGTC
CATTTGGCACATTCTTCTTCAATATGCCCATCTTTTGAAGCTCCAACTAC
GGGCACCTGTGCGTGGTTGTGATTCCCACCTCAATGAATACGGTGTGCAT
CGGATCTGAACGAACGATAGTCCTAGGGAGTGTTCAACAGTTCGACAGGC
TACGGCAGGAGCTACAACTCCCCGAGAAACAATATTTAATTGTCGGGACA
TGCATCTGATTTCGCTATAGTTTTAGCATTTTGTTTTGGGGAAGGTCATC
TG
back to top

Coding sequence (CDS) from alignment at chr_00:1294362..1298663-

>Ec-00_000990.1 ID=Ec-00_000990.1|Name=Ec-00_000990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1227bp|location=Sequence derived from alignment at chr_00:1294362..1298663- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTCGACGATGAGCCACGAAGTCTAACCATGAAACTGATTGAAGAGTG
CACCGCCGGCATATCCAACGGGGTCGCCGGGAGTCCTGAAGAAAGGGCTG
CAGACTTGCTCAAGGTGGAAGTGCTGCGGCTCGATTGGCAAAGGATCGCG
AGCATCCAGAATCTAGACATATTCACGCACCTTCGGGAGCTTTACCTTCA
ACACAACAGGATCCACGTTATCGAGGAACTTGATACACTCCGAAATCTAG
AATTTCTGGCTCTCGGCTCGAACCGAATTCGTCGACTGGAGAACCTTCGG
CATCTCCGCAAGCTGCAGGTACTGGACTTGTCCGCCAACGTTATCGAAGA
CTTCGACACGCAAGAGCTACCACCTGCGCTCGTCATTCTTAACCTGTCGA
GCAACCTGTGCTGCCTTGATCCCGATTTCCGGCAAAGGGTTATTTCGTGT
CTTCCAGGTCTCATGGCCCTGGACGAGGTGCCAGTGGTGCGGTCTTCGCG
AGGTGCTGGGGTAGAAGAATGTAAGGGGGCGATAGAGGATAATCAGCTGC
CCCTGGAAGACGAGAGAGAGGACGACAACGGTGGCGTGGTGACCCTCTAC
GTTACCGTGCACTCGGACGGCCAATCGCACATTGTTCCATTTCACTTCAG
TCCAACAGGAAATACGGCACAGCAACTTCAGCAAGCATCACGCTTTTGTA
CCGAAAACGGCCTACACGGCGATGACGACAAGAGGAACTTGGCAGGGCAA
ATGGAGGAGGCCATCGCCGGGCTAAAGGCTCGCCACATTTCTACAGGACG
CGTTATCTCCGATAGTGAACGGGATTCCGAGGAGGCCCACCGCAAGGGCC
CCGACCGCACCGATCGTCATGAAACGGATGCAAGACTGCATGCGATTGTC
CGTCTCCAGAAAGCGCGTGCTCGTGTGATGGAGGAGTCGACAACGTCTTT
CGAGCAGCACAAGAAGCTTCTACTGGCTGCTACACGGAAGCTAGTCGAGC
AGAAGACGGCTGCAGCACACGGCCGCTCCGACGCGTTGGAGGAAGACATA
ACCAAGATTCTGGAAGACGCACGTGCAGAGCTGCAGCTTCGTCGAGCAAG
GGTATCAGCAGAAAACAGGCGGTTTGCGACGGACATGAGGGAGAAGGTTG
AGAGGGTGTTGGCTGACAGACGCCAAGAATCTCAATCGGTGGTGGGAGCG
CGAGCGGTCGCCATATCTCCGAAATAA
back to top
Synonyms
The feature 'Ec-00_000990.1' has the following synonyms
Synonym
Esi0013_0016
Esi_0013_0016