Ec-00_000920.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000920.1
Unique NameEc-00_000920.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length109
Homology
[Close]
BLAST of Ec-00_000920.1 vs. uniprot
Match: A0A6H5J6X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X1_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 5.340e-46
Identity = 85/108 (78.70%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARAAALKXXXXXXXXXXXXXXXXXXLGGVSGSSPSDAVSAAQRAAAAAQW 324
            MLHELVHNQIGPHSAKFYR+LDQLNDECDKL REGITGRNMPFAGDGQ LGGGRAP DARAAALK                  LGGVSGSSPSDA+SAAQRAAAAAQW
Sbjct:  139 MLHELVHNQIGPHSAKFYRVLDQLNDECDKLTREGITGRNMPFAGDGQPLGGGRAPNDARAAALKAAEKRQRQQGIMGSGGQRLGGVSGSSPSDAISAAQRAAAAAQW 246
[Close]
BLAST of Ec-00_000920.1 vs. uniprot
Match: D7FMC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC5_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 7.070e-38
Identity = 87/90 (96.67%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARAAALKXXXXXXXXXXXXXXXXXXLGGVSGS 270
            MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARAAALK XXXXXXXXXXXXXXX  LGGVSGS
Sbjct:   94 MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARAAALKAXXXXXXXXXXXXXXXQRLGGVSGS 183
[Close]
BLAST of Ec-00_000920.1 vs. uniprot
Match: A0A835YTT9_9STRA (WLM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.190e-16
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARA 183
            +LHEL H   G HSA FYR+LD L +EC+ L+  GI+GRNMP+ G+G++LGGG A  D RA
Sbjct:   59 VLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRA 119
[Close]
BLAST of Ec-00_000920.1 vs. uniprot
Match: A0A4U6UT38_SETVI (WLM domain-containing protein n=2 Tax=Setaria viridis TaxID=4556 RepID=A0A4U6UT38_SETVI)

HSP 1 Score: 71.6 bits (174), Expect = 1.200e-12
Identity = 43/111 (38.74%), Postives = 56/111 (50.45%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRA---PEDARAAALKXXXXXXXXXXXXXXXXXXLGGVSGSSPSDAVSAAQRAAAAAQW 324
            MLHEL HN  GPH A+FY++ D+L  EC++L+ +GITG    F G G+ +GG      P   R A L                   LGG   +    A+S AQ AA AA+W
Sbjct:   93 MLHELCHNDRGPHDAQFYKLWDELRKECEELVSKGITGTGQGFDGTGRRVGGFTIHPPPPSLRQATLAAAQKRARNGALLPSGPRKLGG--NNDIMSALSPAQAAAMAAEW 201
[Close]
BLAST of Ec-00_000920.1 vs. uniprot
Match: A0A388KSJ2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KSJ2_CHABU)

HSP 1 Score: 71.6 bits (174), Expect = 2.670e-12
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGG 156
            MLHELVH ++GPH+A+FY++LD+LN ECD+LI +G++G    F   GQ LGG
Sbjct:  213 MLHELVHIEVGPHNAQFYKLLDELNRECDELIAKGVSGSGAGFDCRGQRLGG 264
[Close]
BLAST of Ec-00_000920.1 vs. uniprot
Match: A0A3L6PBX7_PANMI (DNA-dependent metalloprotease WSS1 n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6PBX7_PANMI)

HSP 1 Score: 70.5 bits (171), Expect = 2.700e-12
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGG 156
            MLHEL HN+ GPH A+FY++ D+L  ECD+L+ +GITG    F G G+ LGG
Sbjct:   55 MLHELCHNERGPHDAQFYKLWDELRKECDELVSKGITGTGQGFDGTGRRLGG 106
[Close]
BLAST of Ec-00_000920.1 vs. uniprot
Match: K3XXW8_SETIT (Uncharacterized protein n=5 Tax=Paniceae TaxID=147428 RepID=K3XXW8_SETIT)

HSP 1 Score: 71.2 bits (173), Expect = 2.790e-12
Identity = 43/111 (38.74%), Postives = 56/111 (50.45%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRA---PEDARAAALKXXXXXXXXXXXXXXXXXXLGGVSGSSPSDAVSAAQRAAAAAQW 324
            MLHEL HN  GPH A+FY++ D+L  EC++L+ +GITG    F G G+ +GG      P   R A L                   LGG   +    A+S AQ AA AA+W
Sbjct:   93 MLHELCHNDRGPHDAQFYKLWDELRKECEELVSKGITGTGQGFDGTGRRVGGFTIHPPPPSLRQATLVAAQKRARNGALLPSGPRKLGG--NNDIMSALSPAQAAAMAAEW 201
[Close]
BLAST of Ec-00_000920.1 vs. uniprot
Match: A0A061RNB8_9CHLO (Dna damage response protein wss1-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RNB8_9CHLO)

HSP 1 Score: 68.6 bits (166), Expect = 4.730e-12
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQS-LGGGRA 165
            +LHELVHN IG HSA FY++LD++  EC+ L+  G+TG+ + FAG     LGGG A
Sbjct:   99 LLHELVHNVIGAHSASFYKLLDEITSECENLMARGVTGQGLGFAGQSAGKLGGGLA 154
[Close]
BLAST of Ec-00_000920.1 vs. uniprot
Match: A0A2S3HL39_9POAL (Uncharacterized protein n=5 Tax=Panicum TaxID=4539 RepID=A0A2S3HL39_9POAL)

HSP 1 Score: 70.5 bits (171), Expect = 5.030e-12
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGG 156
            MLHEL HN+ GPH A+FY++ D+L  ECD+L+ +GITG    F G G+ LGG
Sbjct:   93 MLHELCHNERGPHDAQFYKLWDELRKECDELVSKGITGTGQGFDGTGRRLGG 144
[Close]
BLAST of Ec-00_000920.1 vs. uniprot
Match: A0A5J9TLP8_9POAL (Uncharacterized protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TLP8_9POAL)

HSP 1 Score: 70.1 bits (170), Expect = 7.910e-12
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGG 156
            MLHEL HNQ GPH A+FY++ D+L  EC++L+ +GITG    F G G+ LGG
Sbjct:   93 MLHELCHNQRGPHDAQFYKLWDELRKECEELVSKGITGSGQGFDGTGRRLGG 144
The following BLAST results are available for this feature:
BLAST of Ec-00_000920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6X1_9PHAE5.340e-4678.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMC5_ECTSI7.070e-3896.67Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A835YTT9_9STRA1.190e-1657.38WLM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A4U6UT38_SETVI1.200e-1238.74WLM domain-containing protein n=2 Tax=Setaria viri... [more]
A0A388KSJ2_CHABU2.670e-1257.69Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A3L6PBX7_PANMI2.700e-1255.77DNA-dependent metalloprotease WSS1 n=1 Tax=Panicum... [more]
K3XXW8_SETIT2.790e-1238.74Uncharacterized protein n=5 Tax=Paniceae TaxID=147... [more]
A0A061RNB8_9CHLO4.730e-1253.57Dna damage response protein wss1-like n=1 Tax=Tetr... [more]
A0A2S3HL39_9POAL5.030e-1255.77Uncharacterized protein n=5 Tax=Panicum TaxID=4539... [more]
A0A5J9TLP8_9POAL7.910e-1255.77Uncharacterized protein (Fragment) n=1 Tax=Eragros... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1195387..1196798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue3.6e-41
Seed eggNOG ortholog2880.D7FJ82
Length327
Hectar predicted targeting categoryother localisation
Gene idEc-00_000920.1
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0010225,GO:0012505,GO:0016740,GO:0016787,GO:0016925,GO:0018130,GO:0018193,GO:0018205,GO:0019438,GO:0019538,GO:0019787,GO:0019789,GO:0019985,GO:0031967,GO:0031975,GO:0032182,GO:0032183,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061659,GO:0061665,GO:0070011,GO:0070647,GO:0071704,GO:0071897,GO:0090304,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1990414,GO:1990466
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsKOG1558@1,KOG1558@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000920Ec-00_000920Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1195387..1196798 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000920.1.3Ec-00_000920.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1195387..1195518 -
Ec-00_000920.1.2Ec-00_000920.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1196213..1196304 -
Ec-00_000920.1.1Ec-00_000920.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1196696..1196798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000920.1CDS:Ec-00_000920.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1195387..1195518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000920.1Ec-00_000920.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1195387..1196798 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000920.1 ID=Ec-00_000920.1|Name=Ec-00_000920.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=109bp
MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSL
GGGRAPEDARAAALKAAEKRQQQQGIMGGGGQRLGGVSGSSPSDAVSAAQ
RAAAAAQW*
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spliced messenger RNA

>Ec-00_000920.1 ID=Ec-00_000920.1|Name=Ec-00_000920.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=327bp|location=Sequence derived from alignment at chr_00:1195387..1196798- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCACGAGCTGGTGCACAACCAGATCGGCCCGCACAGCGCGAAGTT
CTACCGGATGTTGGACCAGCTCAACGACGAGTGCGACAAGCTCATTCGGG
AAGGCATAACCGGGCGCAACATGCCATTCGCTGGAGACGGGCAGTCCTTA
GGAGGGGGGCGAGCCCCAGAAGATGCTAGGGCCGCTGCGCTAAAGGCGGC
GGAGAAGAGACAGCAGCAACAGGGTATCATGGGCGGCGGGGGGCAGCGGT
TGGGCGGTGTTTCGGGCTCCTCGCCGTCGGATGCAGTTTCCGCCGCGCAG
CGTGCTGCGGCCGCCGCACAATGGTGA
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protein sequence of Ec-00_000920.1

>Ec-00_000920.1 ID=Ec-00_000920.1|Name=Ec-00_000920.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=109bp
MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSL
GGGRAPEDARAAALKAAEKRQQQQGIMGGGGQRLGGVSGSSPSDAVSAAQ
RAAAAAQW*
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mRNA from alignment at chr_00:1195387..1196798-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000920.1 ID=Ec-00_000920.1|Name=Ec-00_000920.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1412bp|location=Sequence derived from alignment at chr_00:1195387..1196798- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGCACGAGCTGGTGCACAACCAGATCGGCCCGCACAGCGCGAAGTT
CTACCGGATGTTGGACCAGCTCAACGACGAGTGCGACAAGCTCATTCGGG
AAGGTGCGTTCGCTTAATTAGCATCGACCGCGCTTAGTGACTGACCAATG
AAAAGCCGTCAGTGCCAGCGGATAAAACCAAGGCCCCTGGAGGGAGGGGG
CAATGTTCGAGTAGTGCGCAATGCTACCAACTGCGAATGCCAAGATTCAT
CTCTTTACTTATCCTTGCTTACGTTCCCGCTGAGCTCAACCTAATCCATT
TGTGCACTGTCTCTCATTTGCTCGCTCAATGCTTCGTGCCTGTTTGTTGT
TTCTTCTATTGTTAATGTGGTTCTGGCGTACGAGCTTGTCGGAGCCAAGT
GGGTCTCACGTACTCGGTCCCTTCGTGATATTCTTTTGTTTTTGGCCCTT
CGTCTCGTCTTGACTCGTGTGTCCTTGCTCCCGACGCGTTGCAGGCATAA
CCGGGCGCAACATGCCATTCGCTGGAGACGGGCAGTCCTTAGGAGGGGGG
CGAGCCCCAGAAGATGCTAGGGCCGCTGCGCTAAAGGTACCCACCCACTG
GGTTTTCGCATTCGTCGACGTTACGGCACCGGGGTACGCCAAAAATATCA
AGAGAGAAACGATCACAGCAAAACCTGATTGCACCGCGTGCGTCCACTCC
TATCATGAAGGTATCCTAGCCCTCCTCCTGTGATGAACAAAACATGCATA
CCAAGGGTGACACATCGTGCGTGCCGATGGGTGAAGGTGGGGGGTAGGTG
GGAGAAGGACATGAAACTCCAGGAACAACGTTGTTAGACAAAATATATTT
GAACATGTGACTACTGCTGTACCGTTAAGTGGTTTGTTTGTCAAGGGTCT
TTTTCTCTTTTTCGGAAATTCGAACGAACGACGATGACGCCTTTTCCAGG
CGATCACGCGCGTGCGTGCGTACGAGTTCCGGTCGGGCTTGCAGGCAAAC
GTGCAACATTGAGAGCTACAATACCATGATGAACCAGTTCTCCGAGTATA
TTTTATTTCGGTACATGACACGATTGAAGAAATATGGCCAAGAGTGTGAG
TTTGATTGAGTATGCATCGATACATAGCGCGTGGCGACCCCCGACCTTGT
TCTGGTGTTTTTTTTTTTTTTTTAACGCGTTTTGTTCCTCGGTCTTTTGT
TGATATCCCCACCCTCCTCGCTTTGCTTGGTTTTGCCCCCGGTGTGCGGC
CAACCGCTGCCGCCGTGTGCGGCACGACAGGCGGCGGAGAAGAGACAGCA
GCAACAGGGTATCATGGGCGGCGGGGGGCAGCGGTTGGGCGGTGTTTCGG
GCTCCTCGCCGTCGGATGCAGTTTCCGCCGCGCAGCGTGCTGCGGCCGCC
GCACAATGGTGA
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Coding sequence (CDS) from alignment at chr_00:1195387..1196798-

>Ec-00_000920.1 ID=Ec-00_000920.1|Name=Ec-00_000920.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=327bp|location=Sequence derived from alignment at chr_00:1195387..1196798- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGCACGAGCTGGTGCACAACCAGATCGGCCCGCACAGCGCGAAGTT
CTACCGGATGTTGGACCAGCTCAACGACGAGTGCGACAAGCTCATTCGGG
AAGGCATAACCGGGCGCAACATGCCATTCGCTGGAGACGGGCAGTCCTTA
GGAGGGGGGCGAGCCCCAGAAGATGCTAGGGCCGCTGCGCTAAAGGCGGC
GGAGAAGAGACAGCAGCAACAGGGTATCATGGGCGGCGGGGGGCAGCGGT
TGGGCGGTGTTTCGGGCTCCTCGCCGTCGGATGCAGTTTCCGCCGCGCAG
CGTGCTGCGGCCGCCGCACAATGGTGA
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Synonyms
The feature 'Ec-00_000920.1' has the following synonyms
Synonym
Esi1297_0001
Esi_1297_0001