Ec-00_000890.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000890.1
Unique NameEc-00_000890.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length197
Homology
[Close]
BLAST of Ec-00_000890.1 vs. uniprot
Match: D7FJ79_ECTSI (CBS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ79_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 1.940e-108
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1 
Query:    1 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLQAALAMLLANSSDEAEAKITRLAWVFQRCSFRARWKKFFLMDNVGYRVRVSQ 588
            MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLQAALAMLLANSSDEAEAKITRLAWVFQRCSFRARWKKFFLMDNVGYRVRVSQ
Sbjct:    1 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLQAALAMLLANSSDEAEAKITRLAWVFQRCSFRARWKKFFLMDNVGYRVRVSQ 196
[Close]
BLAST of Ec-00_000890.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 1.400e-70
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 
Query:    1 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLQAALAMLLANSSDEAEA 483
            MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLQAALAMLLANSSDEAEA
Sbjct: 1901 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLQAALAMLLANSSDEAEA 2061
[Close]
BLAST of Ec-00_000890.1 vs. uniprot
Match: A0A6H5K5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5J8_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 4.290e-68
Identity = 149/166 (89.76%), Postives = 150/166 (90.36%), Query Frame = 1 
Query:    1 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----DLQAALAMLLANSSDEAEA 483
            MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENSGXXXXXXXXXXXX           XXXXXXX     DLQAALAMLLAN+SDEAEA
Sbjct:   10 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENSGXXXXXXXXXXXXADLAASVLQMAXXXXXXXXXXXRDLQAALAMLLANTSDEAEA 175
[Close]
BLAST of Ec-00_000890.1 vs. uniprot
Match: A0A7S2PMW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PMW1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.900e-29
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:    1 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENS 333
            +A  R DAA++    G L GII+D DV RRVVA  ++P ST++S VMT +PT V M+DSAM+ LG M+E  FRHLPV+D  G V GLL IAKCL DAI +L+K  ++ + +
Sbjct:   49 LASKRGDAALITSANGGLAGIITDTDVTRRVVAKYIEPESTSISSVMTANPTCVAMSDSAMDALGTMVENHFRHLPVVDDNGGVVGLLDIAKCLNDAISKLEKSESKKDGN 159
[Close]
BLAST of Ec-00_000890.1 vs. uniprot
Match: A0A7S0GJB2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GJB2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.250e-28
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:    1 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENS 333
            ++  R+DAA+++   G L GI++D D+ RRVVA RLD SS  V  VMTP+PT V M+DSAM  L IM++  FRHLPV++  G + GLL IAKCL DAI +L++   ++ N+
Sbjct:   35 LSSKRSDAALIMGRDGGLAGIMTDVDITRRVVAQRLDASSAIVEMVMTPNPTCVTMSDSAMSALSIMVDNHFRHLPVLNDLGAIVGLLDIAKCLNDAISKLERSQDKSSNA 145
[Close]
BLAST of Ec-00_000890.1 vs. uniprot
Match: A0A7S1VMX7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VMX7_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.080e-28
Identity = 61/111 (54.95%), Postives = 82/111 (73.87%), Query Frame = 1 
Query:    1 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENS 333
            +A  R DAA+++   G L GI++D+DV RRVVA R+ P ST V + MTP+PT V + DSAME LGIMIEKRFRHLPV+D  G+V GLL IA+CL+  I +L++ + + +NS
Sbjct: 1858 LAKRRGDAALIVSATGRLSGIMTDKDVCRRVVAKRMMPVSTLVQDAMTPNPTCVRLQDSAMEALGIMIEKRFRHLPVVDEHGSVVGLLDIARCLHQTIDKLER-SQKKQNS 1967
[Close]
BLAST of Ec-00_000890.1 vs. uniprot
Match: A0A7R9VL18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VL18_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.730e-28
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:    1 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKK 309
            +A+ R DAA+L+   G L GI++D D+ RRVVA  +DPSST+VS VMT  PT V M DSAM+ L  M+E  FRHLPV+D  G V GLL IAKCL DAI +L++
Sbjct:   55 LANKRGDAALLVGPDGGLAGIVTDTDITRRVVAKHVDPSSTSVSAVMTASPTCVSMTDSAMDALATMVENHFRHLPVVDDNGAVVGLLDIAKCLNDAISKLER 157
[Close]
BLAST of Ec-00_000890.1 vs. uniprot
Match: A0A7R9VME7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VME7_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.750e-27
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:    1 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKK 309
            +A+ R DAA+L+   G L GI++D D+ RRVVA  +DPSST+VS VMT  PT V M DSAM+ L  M+E  FRHLPV+D  G V GLL IAKCL DAI +L++
Sbjct:  390 LANKRGDAALLVGPDGGLAGIVTDTDITRRVVAKHVDPSSTSVSAVMTASPTCVSMTDSAMDALATMVENHFRHLPVVDDNGAVVGLLDIAKCLNDAISKLER 492
[Close]
BLAST of Ec-00_000890.1 vs. uniprot
Match: B7G2M6_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2M6_PHATC)

HSP 1 Score: 116 bits (290), Expect = 3.760e-27
Identity = 55/111 (49.55%), Postives = 81/111 (72.97%), Query Frame = 1 
Query:    1 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENS 333
            ++  R  A++++   G L GI++D D+ RRVVA  +D S+T+VSEVMTP+PT V M+DSAM+ L  M+E  FRHLPV+D +G+V GLL IAKCL DAI +L++ + +  ++
Sbjct:   31 LSSKRGAASLVVSTDGSLAGIMTDTDITRRVVAKHIDTSATSVSEVMTPNPTCVAMSDSAMDALTTMVENHFRHLPVVDDQGSVVGLLDIAKCLNDAISKLERTSEKTNSA 141
[Close]
BLAST of Ec-00_000890.1 vs. uniprot
Match: C6JVY2_PHATR (Myosin 29 n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=C6JVY2_PHATR)

HSP 1 Score: 116 bits (290), Expect = 1.550e-26
Identity = 55/111 (49.55%), Postives = 81/111 (72.97%), Query Frame = 1 
Query:    1 MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARAENS 333
            ++  R  A++++   G L GI++D D+ RRVVA  +D S+T+VSEVMTP+PT V M+DSAM+ L  M+E  FRHLPV+D +G+V GLL IAKCL DAI +L++ + +  ++
Sbjct: 1818 LSSKRGAASLVVSTDGSLAGIMTDTDITRRVVAKHIDTSATSVSEVMTPNPTCVAMSDSAMDALTTMVENHFRHLPVVDDQGSVVGLLDIAKCLNDAISKLERTSEKTNSA 1928
The following BLAST results are available for this feature:
BLAST of Ec-00_000890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ79_ECTSI1.940e-108100.00CBS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G6N9_ECTSI1.400e-70100.00Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K5J8_9PHAE4.290e-6889.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2PMW1_9STRA3.900e-2953.15Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S0GJB2_9STRA1.250e-2850.45Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S1VMX7_9STRA2.080e-2854.95Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7R9VL18_9STRA3.730e-2857.28Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7R9VME7_9STRA3.750e-2757.28Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
B7G2M6_PHATC3.760e-2749.55Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
C6JVY2_PHATR1.550e-2649.55Myosin 29 n=3 Tax=Phaeodactylum tricornutum TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1160048..1162182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.0
Seed ortholog evalue3e-62
Seed eggNOG ortholog2880.D7G6N9
Length591
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
Gene idEc-00_000890.1
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000890Ec-00_000890Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1160048..1162182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000890.1Ec-00_000890.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1160048..1162182 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000890.1.5Ec-00_000890.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1160048..1160155 -
Ec-00_000890.1.4Ec-00_000890.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1160210..1160308 -
Ec-00_000890.1.3Ec-00_000890.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1161003..1161158 -
Ec-00_000890.1.2Ec-00_000890.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1161665..1161806 -
Ec-00_000890.1.1Ec-00_000890.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1162097..1162182 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000890.1CDS:Ec-00_000890.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1160048..1160155 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000890.1 ID=Ec-00_000890.1|Name=Ec-00_000890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=197bp
MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPH
PTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQR
LKKKAARAENSGGGGGGGNANLAASVLQMANAGKGKGKNKTRDLQAALAM
LLANSSDEAEAKITRLAWVFQRCSFRARWKKFFLMDNVGYRVRVSQ*
back to top

spliced messenger RNA

>Ec-00_000890.1 ID=Ec-00_000890.1|Name=Ec-00_000890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=591bp|location=Sequence derived from alignment at chr_00:1160048..1162182- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGACGTCCGCACCGATGCTGCGATACTCCTGGACAACAAGGGCCA
TCTGGAGGGCATCATCAGCGATCAAGACGTTGCGAGGCGGGTGGTAGCGA
ACAGACTGGACCCGTCTTCGACAACGGTGAGCGAGGTGATGACGCCCCAC
CCGACCATCGTCCACATGGCGGACAGCGCCATGGAATGCCTGGGCATCAT
GATCGAGAAGCGATTCAGACATCTGCCGGTGATCGATGGCGAGGGAAACG
TGACTGGTCTTCTCAGCATCGCCAAGTGCCTGTACGACGCCATCCAAAGG
CTCAAGAAGAAGGCTGCAAGGGCCGAGAACAGCGGCGGTGGCGGTGGCGG
CGGCAACGCCAACCTAGCCGCGTCGGTTCTCCAGATGGCCAACGCCGGGA
AGGGCAAGGGCAAGAACAAGACGAGGGACCTCCAGGCCGCCCTGGCGATG
CTGCTGGCCAACTCCTCAGACGAGGCCGAAGCGAAAATTACACGCCTCGC
GTGGGTGTTCCAGCGATGCTCATTTCGAGCCCGCTGGAAGAAGTTTTTTC
TGATGGATAATGTAGGGTACAGGGTTAGGGTTAGCCAATAG
back to top

protein sequence of Ec-00_000890.1

>Ec-00_000890.1 ID=Ec-00_000890.1|Name=Ec-00_000890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=197bp
MADVRTDAAILLDNKGHLEGIISDQDVARRVVANRLDPSSTTVSEVMTPH
PTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQR
LKKKAARAENSGGGGGGGNANLAASVLQMANAGKGKGKNKTRDLQAALAM
LLANSSDEAEAKITRLAWVFQRCSFRARWKKFFLMDNVGYRVRVSQ*
back to top

mRNA from alignment at chr_00:1160048..1162182-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000890.1 ID=Ec-00_000890.1|Name=Ec-00_000890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2135bp|location=Sequence derived from alignment at chr_00:1160048..1162182- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCTGACGTCCGCACCGATGCTGCGATACTCCTGGACAACAAGGGCCA
TCTGGAGGGCATCATCAGCGATCAAGACGTTGCGAGGTGCACAGGGTTTC
GTAGTGTTGGGGGGGTCGGACGGTCTTGGTGCCGTTGAGCGGGTTGTGTC
TATTGCGCTACAGCAGTGTCACCAAGCGCCGCATTTAATGTCCGAAATTT
CTGTTTTCCACAGGCGTGCATCGTAGCAGGGCGTAAACGAAACCAGCTTT
AATGCTTCTTCATTGTACCACTCCATGTCTTGCGTCGCCAGCGGCGTCGT
TCGTGTGTATGGTTATAGTTTTGCTGTTCGTGGTCTGAGGTGGTTGTTGC
TGTCGTCGCCGTAATTGATGAATCAGGCGGGTGGTAGCGAACAGACTGGA
CCCGTCTTCGACAACGGTGAGCGAGGTGATGACGCCCCACCCGACCATCG
TCCACATGGCGGACAGCGCCATGGAATGCCTGGGCATCATGATCGAGAAG
CGATTCAGACATCTGCCGGTGAGGTTGAGGAAGATATACATTTTTGAAAC
GTATATCTACAGGCGGTGCCACCGCTTCAAAACCTCTTTTTTTGCCGAGG
CTCATTCTCTCGTGGCATGTGTTACCCAACAGCGACGATATATGTAGGTG
TTAGTATAGTATTGTTCAAACTGAACACCTGTTCTGTGGTGAAGATCTTT
GGTTTCGATTTTCTTTAGCCTGAAGTTGATGATTCCCAGGTTGTTATTTG
GCGCCTTTGTCAACCAAAACATGGCGTTGAAGACGAGGATGTAAGACTGT
ACACAGAGTTGTAAAATGTTCGGTGTGGTTCGTTGACGTTCGCTGGGCTC
TTCGAGTCAAAAACCCGGAACATCACACCGCGGCCGGAAGCTAGATGTGA
GTTGGTCCTGCTCAATGCTTTCAGTACCATCTTTCATCACCCCTTTAGTG
CTCTCATGAGCCAGCCCACTCCGGAGGGACCATCACTTGTATTGTGGACG
TATGTGATTCGATATGGTCGCCAGGTGATCGATGGCGAGGGAAACGTGAC
TGGTCTTCTCAGCATCGCCAAGTGCCTGTACGACGCCATCCAAAGGCTCA
AGAAGAAGGCTGCAAGGGCCGAGAACAGCGGCGGTGGCGGTGGCGGCGGC
AACGCCAACCTAGCCGCGTCGGTTCTCCAGGTTAGCAGAGCAGGCGTTTT
TCCCGTCGTCACTCTATCTAGCGCAAGGCTTTTTTCTTGCGCTTTGCCGA
TCAATTTGTACGTTTTAAGGATAGCGTACATCGTGCACACTTACCGAACG
CGTGTAGACCGGGGCCAGAGTAGATGGGACGGATGCCACTGGTGATGATT
TGTTCATATTCCGACACGGAAGCATTGCCAACTGCGTCCCCCCAACTCTG
GCGGCTGGCCTCACAAAGAACTTTATGCGTCTGTCAATTCCATTTATTGG
GATGGCGTTTTTTATGATGTTTCGGTGTGTCTTGGGGCTCGTCAGCCGGG
GGGTTAACCGCGGAAGGCGACGCGTTTTTTTTTTTTCTGTCTGCGGTGCC
TCTTGCCTTCAAATTTGGCCTGACGAGAGTTCAGCTAATCCTCTCCTTCG
TTGACCGTCAAGTCGGCCTTTGTGTATGCCCCCAAGTAACCGCTTTCCAA
GTTTTGCTTGAACACGGATATAAGAAAATAAATGCTCAGCAAGGCCCGTG
GGATAGAAAGCCGGGCCCCTGCGCCCCCCCCCCCCCCCCCGAAGGTTGGG
CTAGTTGTCGTCGTGGTTGATGGGGTTCAACGGTGTAAGTTCGGCTCAGA
TGGCCAACTCCATTGATGGTGTGCGTAAGCTCTCACACCGTGGAAACCCG
TTGCGCCATTGTGTTGCGACTCAGATGGCCAACGCCGGGAAGGGCAAGGG
CAAGAACAAGACGAGGGACCTCCAGGCCGCCCTGGCGATGCTGCTGGCCA
ACTCCTCAGACGAGGCCGAAGCGGTGGGTTGTTTTTGTCTCTCGCCTTCT
AGATGGATACCTTGCCGCCGGGTTTAGAAAATTACACGCCTCGCGTGGGT
GTTCCAGCGATGCTCATTTCGAGCCCGCTGGAAGAAGTTTTTTCTGATGG
ATAATGTAGGGTACAGGGTTAGGGTTAGCCAATAG
back to top

Coding sequence (CDS) from alignment at chr_00:1160048..1162182-

>Ec-00_000890.1 ID=Ec-00_000890.1|Name=Ec-00_000890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=591bp|location=Sequence derived from alignment at chr_00:1160048..1162182- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCTGACGTCCGCACCGATGCTGCGATACTCCTGGACAACAAGGGCCA
TCTGGAGGGCATCATCAGCGATCAAGACGTTGCGAGGCGGGTGGTAGCGA
ACAGACTGGACCCGTCTTCGACAACGGTGAGCGAGGTGATGACGCCCCAC
CCGACCATCGTCCACATGGCGGACAGCGCCATGGAATGCCTGGGCATCAT
GATCGAGAAGCGATTCAGACATCTGCCGGTGATCGATGGCGAGGGAAACG
TGACTGGTCTTCTCAGCATCGCCAAGTGCCTGTACGACGCCATCCAAAGG
CTCAAGAAGAAGGCTGCAAGGGCCGAGAACAGCGGCGGTGGCGGTGGCGG
CGGCAACGCCAACCTAGCCGCGTCGGTTCTCCAGATGGCCAACGCCGGGA
AGGGCAAGGGCAAGAACAAGACGAGGGACCTCCAGGCCGCCCTGGCGATG
CTGCTGGCCAACTCCTCAGACGAGGCCGAAGCGAAAATTACACGCCTCGC
GTGGGTGTTCCAGCGATGCTCATTTCGAGCCCGCTGGAAGAAGTTTTTTC
TGATGGATAATGTAGGGTACAGGGTTAGGGTTAGCCAATAG
back to top
Synonyms
The feature 'Ec-00_000890.1' has the following synonyms
Synonym
Esi1278_0001
Esi_1278_0001