Ec-00_000850.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000850.1
Unique NameEc-00_000850.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length179
Homology
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BLAST of Ec-00_000850.1 vs. uniprot
Match: D8LNY4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY4_ECTSI)

HSP 1 Score: 363 bits (931), Expect = 2.360e-125
Identity = 173/179 (96.65%), Postives = 175/179 (97.77%), Query Frame = 3 
Query:   51 MFEDDRGRHGQVNFKRRHVDGEVELTNDGGRTWLAFRLLHPPFLNGEPERKESASTLFNLESIFSVLGEIFRNGSVWELDGGFDRRMPEKLGRVGDMSPNVAFGRCLVYRIDVSDLLEDKSERARLFQELFAFRLCTEPRPRQDHLLSPVRVHTYASGQPLNGWDNLPEYSRLPYSVKF 587
            MFEDDRGRHGQVNFKRRHVDGEVELTNDGGRTWLAFRLL PPFLNGEPERKESASTLF+LESI SV GEIFRNGS+WELDGGFDRRMPEKLGRVGDMSPN AFGRCLVYRIDVSDLLEDKSERARLFQELFAFRLCTEPRPRQDHLLSPVRVHTYASGQPLNGWDNLPEYSRLPYSVKF
Sbjct:   53 MFEDDRGRHGQVNFKRRHVDGEVELTNDGGRTWLAFRLLRPPFLNGEPERKESASTLFDLESILSVFGEIFRNGSLWELDGGFDRRMPEKLGRVGDMSPNGAFGRCLVYRIDVSDLLEDKSERARLFQELFAFRLCTEPRPRQDHLLSPVRVHTYASGQPLNGWDNLPEYSRLPYSVKF 231
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BLAST of Ec-00_000850.1 vs. uniprot
Match: D7FIY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY5_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 3.660e-82
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 3 
Query:   51 MFEDDRGRHGQVNFKRRHVDGEVELTNDGGRTWLAFRLLHPPFLNGEPERKESASTLFNLESIFSVLGEIFRNGSVWELDGGFDRRMPEKLGRVGDMSPNVAFGRCLVYRIDVSDLLE 404
            MFEDDRGRHGQVNFKRRHVDGEVELTNDGGRTWLAFRLLHPPFLNGEPERKESASTLFNLESIFSVLGEIFRNGSVWELDGGFDRRMPEKLGRVGDMSPNVAFGRCLVYRIDVSDLLE
Sbjct:    1 MFEDDRGRHGQVNFKRRHVDGEVELTNDGGRTWLAFRLLHPPFLNGEPERKESASTLFNLESIFSVLGEIFRNGSVWELDGGFDRRMPEKLGRVGDMSPNVAFGRCLVYRIDVSDLLE 118
[Close]
BLAST of Ec-00_000850.1 vs. uniprot
Match: D8LC88_ECTSI (RNA-dependent RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC88_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 5.790e-79
Identity = 134/179 (74.86%), Postives = 135/179 (75.42%), Query Frame = 3 
Query:   51 MFEDDRGRHGQVNFKRRHVDGEVELTNDGGRTWLAFRLLHPPFLNGEPERKESASTLFNLESIFSVLGEIFRNGSVWELDGGFDRRMPEKLGRVGDMSPNVAFGRCLVYRIDVSDLLEDKSERARLFQELFAFRLCTEPRPRQDHLLSPVRVHTYASGQPLNGWDNLPEYSRLPYSVKF 587
            MFEDDRGRHGQVNFKRRHVDGEVELTNDGGRTWLAFRLLHPP                                            MPEKLGRVG+MSPNVAFGRCLVYRIDVSDLLEDKSERARLFQELFAFRLCTEPRPRQDHLLSPVRVHTYASGQPLNGWDNLPEYSRLPYSVKF
Sbjct:   53 MFEDDRGRHGQVNFKRRHVDGEVELTNDGGRTWLAFRLLHPP--------------------------------------------MPEKLGRVGNMSPNVAFGRCLVYRIDVSDLLEDKSERARLFQELFAFRLCTEPRPRQDHLLSPVRVHTYASGQPLNGWDNLPEYSRLPYSVKF 187
The following BLAST results are available for this feature:
BLAST of Ec-00_000850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNY4_ECTSI2.360e-12596.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FIY5_ECTSI3.660e-82100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LC88_ECTSI5.790e-7974.86RNA-dependent RNA polymerase n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1084459..1087289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.1
Seed ortholog evalue3e-69
Seed eggNOG ortholog2880.D8LC88
Preferred nameRDR1
Length589
KEGG koko:K11699
Hectar predicted targeting categoryother localisation
Gene idEc-00_000850.1
GOsGO:0000003,GO:0001101,GO:0001172,GO:0002252,GO:0002376,GO:0003006,GO:0003674,GO:0003824,GO:0003968,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007154,GO:0007275,GO:0008037,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009616,GO:0009620,GO:0009719,GO:0009725,GO:0009751,GO:0009791,GO:0009856,GO:0009875,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009987,GO:0010025,GO:0010033,GO:0010073,GO:0010074,GO:0010166,GO:0010267,GO:0010467,GO:0010468,GO:0010492,GO:0010495,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016043,GO:0016070,GO:0016246,GO:0016441,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019827,GO:0022414,GO:0030422,GO:0031047,GO:0031048,GO:0031050,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0034062,GO:0034641,GO:0034654,GO:0035194,GO:0035821,GO:0040029,GO:0042221,GO:0042493,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044003,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044706,GO:0045087,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046677,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048507,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048544,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051607,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0052018,GO:0052249,GO:0060147,GO:0060148,GO:0060255,GO:0060968,GO:0061458,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0070919,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090567,GO:0097659,GO:0097747,GO:0098542,GO:0098586,GO:0098727,GO:0099402,GO:0140098,GO:1901360,GO:1901362,GO:1901568,GO:1901570,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA-directed 5'-3' RNA polymerase activity
EggNOG OGsKOG0988@1,KOG0988@2759
EC2.7.7.48
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000850Ec-00_000850Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1084459..1087289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000850.1Ec-00_000850.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1084460..1087238 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000850.1.4Ec-00_000850.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1084459..1084642 -
Ec-00_000850.1.3Ec-00_000850.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1084790..1084978 -
Ec-00_000850.1.2Ec-00_000850.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1086895..1086993 -
Ec-00_000850.1.1Ec-00_000850.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1087173..1087289 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0008503UTR:Ec-00_000850.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1084459..1084459 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000850.1CDS:Ec-00_000850.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1084460..1084642 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0008505UTR:Ec-00_000850.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1087239..1087289 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000850.1 ID=Ec-00_000850.1|Name=Ec-00_000850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=179bp
MFEDDRGRHGQVNFKRRHVDGEVELTNDGGRTWLAFRLLHPPFLNGEPER
KESASTLFNLESIFSVLGEIFRNGSVWELDGGFDRRMPEKLGRVGDMSPN
VAFGRCLVYRIDVSDLLEDKSERARLFQELFAFRLCTEPRPRQDHLLSPV
RVHTYASGQPLNGWDNLPEYSRLPYSVKF
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spliced messenger RNA

>Ec-00_000850.1 ID=Ec-00_000850.1|Name=Ec-00_000850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=589bp|location=Sequence derived from alignment at chr_00:1084459..1087289- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TAGATTTGTCGAACCAGCCGGAGTCAAAAAAGAGGATCCCTGGCCTCGCT
GATGTTCGAGGATGACCGCGGACGGCATGGCCAAGTGAACTTCAAGAGGC
GCCACGTTGACGGAGAGGTTGAGCTGACGAACGATGGGGGCAGGACGTGG
CTGGCGTTCAGGCTGTTGCACCCTCCGTTTCTGAACGGCGAACCGGAGCG
CAAGGAATCAGCCTCGACTCTCTTCAATCTGGAGTCCATCTTTTCCGTTC
TCGGAGAAATATTTCGCAATGGAAGCGTTTGGGAGCTGGACGGCGGGTTT
GACAGGAGGATGCCCGAGAAGCTCGGGCGCGTCGGAGACATGTCCCCGAA
CGTCGCCTTCGGGCGGTGCCTTGTCTACCGCATCGACGTCTCCGACCTGT
TGGAGGACAAGAGCGAGCGAGCAAGGCTATTCCAGGAGCTCTTTGCGTTC
CGCCTCTGCACCGAGCCTCGCCCCCGGCAAGACCACCTTCTATCTCCCGT
CCGCGTCCACACGTACGCCTCAGGGCAACCGCTGAACGGCTGGGACAACC
TGCCGGAGTACAGCAGGTTGCCGTATAGCGTCAAGTTCC
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protein sequence of Ec-00_000850.1

>Ec-00_000850.1 ID=Ec-00_000850.1|Name=Ec-00_000850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=179bp
MFEDDRGRHGQVNFKRRHVDGEVELTNDGGRTWLAFRLLHPPFLNGEPER
KESASTLFNLESIFSVLGEIFRNGSVWELDGGFDRRMPEKLGRVGDMSPN
VAFGRCLVYRIDVSDLLEDKSERARLFQELFAFRLCTEPRPRQDHLLSPV
RVHTYASGQPLNGWDNLPEYSRLPYSVKF
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mRNA from alignment at chr_00:1084459..1087289-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000850.1 ID=Ec-00_000850.1|Name=Ec-00_000850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2831bp|location=Sequence derived from alignment at chr_00:1084459..1087289- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TAGATTTGTCGAACCAGCCGGAGTCAAAAAAGAGGATCCCTGGCCTCGCT
GATGTTCGAGGATGACCGCGGACGGCATGGCCAAGTGAACTTCAAGAGGC
GCCACGTTGACGGAGAGGTTTGAAAATATGAAATCCGTAACATGATTACG
TTGTAATCGCCTGTAGCTGCTGCCTCTCGGTGGTGCTACCGGGAGTATTC
CGGTGTCCGTGTGAAATCAGGCTCGGAAGCTTGTTTTATACAGGAGTTCA
TGTGTCGCCGTCACGTTTGTGTCCGTCTCCTGTAAATGATAATAAGGTTG
AGCTGACGAACGATGGGGGCAGGACGTGGCTGGCGTTCAGGCTGTTGCAC
CCTCCGTTTCTGAACGGCGAACCGGAGCGCAAGGAATCAGCCTCGGTACG
TGTAAGTTAGTGGATCGGGTTTGCGCTTTACTATGGTATCAATGTTATAC
CATGAGGTCTGCGTGATGAGCATCATCAATGGTGTGTAGTCAAGAATATT
TCCCTGATGGTACTGCCTGTGCCGGATTGCTTGGTGTGTTCTTTTCAGCG
AATGTCAGATCTACTGAAAAGAGGCGCTCACTAAAACAAATCTAATATGT
TAATGGCGCATGTCAACAGTCTATATGTTGAAGAGTTGATGTGCCACGGC
AGTAGTCTAGTACAGCAGTGAGCACGATATCAAATACGCTTTTCCACACC
CTTTGTGACAGGTGTGCGGAGGTGTACTTGCAAATATGATTTTACAACCA
ATAGGATTTGGTTCGAAGAGTATTGAGAAAAACATTTGATACACTCCGCT
GGGGGGCGTGTGCTCTGCCGGGTCACAATTTTACCTACAGCAGCAGCATT
TATCAGACGTCCTCGGTTGAGGTCGCTCAACAACATCGTTTTTACTACCA
CGTTATGTGATCAAACAAAGTGTATCAAACAAATAGTAGAGAAAAACCAA
AATTGGTCAAATTACGGATATCCCGCCTACAGCCGCCACGCTTTCTCTCA
ATTTTCCACCCTGCGGAAAAAACTCACCAAACTTTGTCTCTTTTTCACAG
ACTAGAGTGTGTACGTCTTGAAACTCAAATTTGCGTGTGGATTGCTTACG
AACAACAACCAATTCTACACGGGATTGCGAAAACACGCTTTTAGTACTTT
GAAAATAGGATTATTGTAGAAGGCAGCCGCCCAACGAAGAAACGGTTTAC
CCTCTGAGGACATACTTCCAGGACCAAACAAGCCATGTTTGACGAGAACA
AGTGATGAAAAGTATTTGTTACCAAGTCTTGACCCGAGACCCTGTTTCGG
TCATCATCCCACCTTGAGAACGAGCCAGACCTTAACAAACATCTTCCGAC
AAGACCTCCACGAGACCTCGTTGAGAGCACGTTTGTTGAAGTCAGGTTCG
TGTTCTAGGTGGGATGAAGATGGGAACAGGGTCTCGGATGAAAACTCCGG
CGGCAATGACTTTACCTCACTAGTCGTGTCGAATGTCGAAGACGTTTATT
TGAGCCCTGGAGTATGTCCTCGGAGGGGCAACCGTTTCTTCGTCTGGCGG
CAGAGCCGTGTCCTCGACGGCCCTGGCGTTTGTAGTAGCCGTGGATGTGA
ACCCCATTGTCAAGGACAAGTTCCTCATACAACGCGTATCTTGCTCGATA
GGAGTCTCTTCAACGAGTGATGTGTCAAACCTCTTTGCAGTCGGAGTCCT
TTTGTTTTGTTTTCGATGAAAATTTCGTTGCGACTTGCACGGCATTCTCC
GGTTAGAGGCCTCCCCTTCTTTTAACCAACATGTCCGCTGCCGGAGGCGC
TGCTGAGAAGGCCACAAGAAACAGTCTAAAGGAAGATGAGAGAGGCACTG
CAGTGATCGAGGAGCTCCTCAATGGTAGCACCCACGCAAAGTTGGCCAAG
GGCGACATGAAGCGAGTCGCACACATGTATGTTGGCCCGCGGTACCAAGA
AACGTGTGAGGGTTTCGAGCAGGAATGGGATCGGTTAGGCGGACACCAGC
GAAAAAGCTGCTCCAGATTCCTCCCAAGAACCGCACTACCCAGCGACCTG
TTGCTGCACGACTGGGGGGACCCGTTCCCGCACAGGGACTTAGGACATTT
TCTGTTCGGATGCCACGGTGTCCAAGCGATTTTAACCCTTGCCCGAAAAA
TATCCTCATCCGTCCTCTTCTCTTCCTCTCATCGCGAAAATCATGCAAGG
TCAAATCAACAACGGCGATTAAATTTATTGGAGGAGTCCCTCCCCCTACC
GCCCCTCATTGCCGTGTAGGCGTAACCCCCCCCCCCTGTCTGTCACTCTT
TCCCCCGCCAGACTCTCTTCAATCTGGAGTCCATCTTTTCCGTTCTCGGA
GAAATATTTCGCAATGGAAGCGTTTGGGAGCTGGACGGCGGGTTTGACAG
GAGGATGCCCGAGAAGCTCGGGCGCGTCGGAGACATGTCCCCGAACGTCG
CCTTCGGGCGGTGCCTTGTCTACCGCATCGACGTCTCCGACCTGTTGGAG
GTGCGAGCGCTGTTGTTGTTGGTAGTAGTGGTGTTGGTGGGTGTTGGTGG
TATTGACATTAGGCAAAAGCGCTGCTACGAAAGCTGAGACTAGTCACAAA
AGTACCCACCCTTCTTGCCATCCATCCGCCCGCCCCCTCCCTCTCAGGAC
AAGAGCGAGCGAGCAAGGCTATTCCAGGAGCTCTTTGCGTTCCGCCTCTG
CACCGAGCCTCGCCCCCGGCAAGACCACCTTCTATCTCCCGTCCGCGTCC
ACACGTACGCCTCAGGGCAACCGCTGAACGGCTGGGACAACCTGCCGGAG
TACAGCAGGTTGCCGTATAGCGTCAAGTTCC
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Coding sequence (CDS) from alignment at chr_00:1084459..1087289-

>Ec-00_000850.1 ID=Ec-00_000850.1|Name=Ec-00_000850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=537bp|location=Sequence derived from alignment at chr_00:1084459..1087289- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTCGAGGATGACCGCGGACGGCATGGCCAAGTGAACTTCAAGAGGCG
CCACGTTGACGGAGAGGTTGAGCTGACGAACGATGGGGGCAGGACGTGGC
TGGCGTTCAGGCTGTTGCACCCTCCGTTTCTGAACGGCGAACCGGAGCGC
AAGGAATCAGCCTCGACTCTCTTCAATCTGGAGTCCATCTTTTCCGTTCT
CGGAGAAATATTTCGCAATGGAAGCGTTTGGGAGCTGGACGGCGGGTTTG
ACAGGAGGATGCCCGAGAAGCTCGGGCGCGTCGGAGACATGTCCCCGAAC
GTCGCCTTCGGGCGGTGCCTTGTCTACCGCATCGACGTCTCCGACCTGTT
GGAGGACAAGAGCGAGCGAGCAAGGCTATTCCAGGAGCTCTTTGCGTTCC
GCCTCTGCACCGAGCCTCGCCCCCGGCAAGACCACCTTCTATCTCCCGTC
CGCGTCCACACGTACGCCTCAGGGCAACCGCTGAACGGCTGGGACAACCT
GCCGGAGTACAGCAGGTTGCCGTATAGCGTCAAGTTC
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Synonyms
The feature 'Ec-00_000850.1' has the following synonyms
Synonym
Esi1242_0002
Esi_1242_0002