Ec-00_000810.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000810.1
Unique NameEc-00_000810.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length186
Homology
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BLAST of Ec-00_000810.1 vs. uniprot
Match: D7FIU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU5_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 5.490e-130
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1 
Query:    1 MQQHARLRPIEAGLACSRCPEQRPERGGGGAGEAAAGNTGESRFPGGIVKSWWRARYPYEGAAGFGLMREEMLIRSNARQVLACDPEDMIIADASSTKAGVSVMVELGADASALDVYQPPKAYKVTDHLRTCPPVERMTLPLYPQERLSPLQIAHFAACLSRWCVALVFHGSVYTRAPQCATLVV 555
            MQQHARLRPIEAGLACSRCPEQRPERGGGGAGEAAAGNTGESRFPGGIVKSWWRARYPYEGAAGFGLMREEMLIRSNARQVLACDPEDMIIADASSTKAGVSVMVELGADASALDVYQPPKAYKVTDHLRTCPPVERMTLPLYPQERLSPLQIAHFAACLSRWCVALVFHGSVYTRAPQCATLVV
Sbjct:    1 MQQHARLRPIEAGLACSRCPEQRPERGGGGAGEAAAGNTGESRFPGGIVKSWWRARYPYEGAAGFGLMREEMLIRSNARQVLACDPEDMIIADASSTKAGVSVMVELGADASALDVYQPPKAYKVTDHLRTCPPVERMTLPLYPQERLSPLQIAHFAACLSRWCVALVFHGSVYTRAPQCATLVV 185
[Close]
BLAST of Ec-00_000810.1 vs. uniprot
Match: A0A6H5L6P2_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6P2_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 6.750e-42
Identity = 122/342 (35.67%), Postives = 123/342 (35.96%), Query Frame = 1 
Query:  109 GNTGESRFPGGIVKSWWRARYPYEGAAGFGLMREEMLIRSNARQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLACDPEDMIIADASSTKAGVSVMVELGADASALDVYQPPKAYKVTDHLRTCPPVERMTLPLYPQERLSPLQIAHFAACL 480
            GNTGESRFPGGIVKSWWRARYPYEGAAGFGLMREEMLIRSNARQ                                                                                                                                                                                                                          VLACDPEDMIIADASSTKAGVSVMVELGADASALDVYQPPKAYKV DHLRTCPPVERMTLPLYPQERLSP+QIAHFAACL
Sbjct:  374 GNTGESRFPGGIVKSWWRARYPYEGAAGFGLMREEMLIRSNARQIWLAMSDGTLLDCCYCKAYGGREGTGRSSXXXXXXXEGVGGGLPAAAGRXXXXXSDDGVGEGGERRSTGCVLFCNPNAGYYESMVLAGEGGRNWVSFYTSVGCDVFLFNYRGYGRSGGKASPANINKDVREIVTYLRENVGVTRLAVHGESIGGVAAASVARHSQVDLLILDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYKARLVLACDPEDMIIADASSTKAGVSVMVELGADASALDVYQPPKAYKVADHLRTCPPVERMTLPLYPQERLSPVQIAHFAACL 715
The following BLAST results are available for this feature:
BLAST of Ec-00_000810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIU5_ECTSI5.490e-130100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6P2_9PHAE6.750e-4235.67AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1066458..1070238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length558
Hectar predicted targeting categoryother localisation
Gene idEc-00_000810.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000810Ec-00_000810Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1066458..1070238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000810.1Ec-00_000810.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1066458..1070238 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000810.1.1Ec-00_000810.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1066458..1066529 +
Ec-00_000810.1.2Ec-00_000810.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1067044..1067211 +
Ec-00_000810.1.3Ec-00_000810.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1069326..1069448 +
Ec-00_000810.1.4Ec-00_000810.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1069855..1069973 +
Ec-00_000810.1.5Ec-00_000810.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1070163..1070238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000810.1CDS:Ec-00_000810.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1066458..1066529 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000810.1 ID=Ec-00_000810.1|Name=Ec-00_000810.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=186bp
MQQHARLRPIEAGLACSRCPEQRPERGGGGAGEAAAGNTGESRFPGGIVK
SWWRARYPYEGAAGFGLMREEMLIRSNARQVLACDPEDMIIADASSTKAG
VSVMVELGADASALDVYQPPKAYKVTDHLRTCPPVERMTLPLYPQERLSP
LQIAHFAACLSRWCVALVFHGSVYTRAPQCATLVV*
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spliced messenger RNA

>Ec-00_000810.1 ID=Ec-00_000810.1|Name=Ec-00_000810.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=558bp|location=Sequence derived from alignment at chr_00:1066458..1070238+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAGCACGCAAGACTTCGACCGATCGAGGCAGGCCTTGCTTGTTC
CCGGTGTCCGGAACAACGACCGGAGCGTGGGGGGGGGGGCGCGGGGGAAG
CCGCAGCTGGGAACACCGGCGAGTCTAGGTTCCCGGGGGGAATCGTGAAG
AGCTGGTGGCGGGCTAGGTACCCGTACGAGGGGGCGGCGGGGTTCGGGCT
CATGCGCGAGGAGATGCTCATCAGGAGCAACGCTCGGCAGGTCCTGGCGT
GCGATCCGGAGGACATGATCATCGCCGACGCTTCCTCCACCAAGGCGGGC
GTGTCGGTGATGGTGGAGCTCGGCGCCGACGCGTCGGCTCTGGACGTCTA
CCAGCCTCCGAAGGCCTACAAGGTTACCGACCACTTGAGAACCTGCCCCC
CAGTGGAGCGCATGACCCTGCCCCTCTACCCACAAGAACGCCTCTCGCCT
CTGCAGATCGCTCACTTCGCGGCATGCCTAAGTCGGTGGTGCGTGGCTCT
TGTGTTTCATGGTTCTGTCTACACACGAGCACCGCAATGTGCGACCTTGG
TCGTCTAG
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protein sequence of Ec-00_000810.1

>Ec-00_000810.1 ID=Ec-00_000810.1|Name=Ec-00_000810.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=186bp
MQQHARLRPIEAGLACSRCPEQRPERGGGGAGEAAAGNTGESRFPGGIVK
SWWRARYPYEGAAGFGLMREEMLIRSNARQVLACDPEDMIIADASSTKAG
VSVMVELGADASALDVYQPPKAYKVTDHLRTCPPVERMTLPLYPQERLSP
LQIAHFAACLSRWCVALVFHGSVYTRAPQCATLVV*
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mRNA from alignment at chr_00:1066458..1070238+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000810.1 ID=Ec-00_000810.1|Name=Ec-00_000810.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3781bp|location=Sequence derived from alignment at chr_00:1066458..1070238+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGCAGCACGCAAGACTTCGACCGATCGAGGCAGGCCTTGCTTGTTC
CCGGTGTCCGGAACAACGACCGGTGAGCAATGATGAGCTAGCTCTGTCCC
GCACAGCAGTCTCCCCCTCTCTTGGTTTTGTCTCTCTGTCCCCCCTCCCC
CCACTGCCCCCCTGTGTCTGTGGGGACCGCCTTCGCGAGAAATTAAGCTC
ATGACGAAACATAACAGGGGGGGGGGGTACCCAAACATTATTCCCTAAGC
CTATTCCAACTTCCCCGAAAGCATGCTTTATCCAATACGTTACCTTGATA
CAAAAATCCTGAAAAGTTTGTTGGTCTGTTGATCCCGTTGTTCCATCATT
TACCTGCGCCCCTACCCTACACTGGCGCCCCCCCCCCCCCCCACGGACGC
CCTTTTTTTTTTTTTGGGGTCCCAAGAACCGGTCGGGCCTGTCCGCCCAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ATTTTTGGGGGGGGGGGGGGGGCCTTTCCCACTGAGGAGCGTGGGGGGGG
GGGCGCGGGGGAAGCCGCAGCTGGGAACACCGGCGAGTCTAGGTTCCCGG
GGGGAATCGTGAAGAGCTGGTGGCGGGCTAGGTACCCGTACGAGGGGGCG
GCGGGGTTCGGGCTCATGCGCGAGGAGATGCTCATCAGGAGCAACGCTCG
GCAGGTAGGGTGGGGCAGGGGCGTGGGGGTGGGGGGGGTTGCACGGCGTA
AGCCTCCATGCCCTTGTGCTGCTTGTTTTGAACGCGAACTTTTTCGTCGA
GAGTGGCTCGGAAGGCTAGCAAGCCGTTGGAAAGAGGATCAATTCATTCG
GCGAAGGGGGGGACGACGGTAAAAGGGCGATAGCACTTAGATCAGCAGTT
CTACTGTTTTTGTGGTTGTCATATTTTTTTGTTGTCATTTGTGTTGGTGT
TCCTGAAGCAAAGAGCGGAAGAGAAGAGGGGCGAGAGGTTGGGATTGACA
TGGATGACTGTGGCTTTTAGTCTGCCCCCACACGGCTTCTCCGTAGGAAA
CCCCATCCAGGCTACACCTACACGTTTTCTGTGCATACTACTGATGATGT
AAGGGTCAACGACTTTAGCTTCGCATACGTTTGACCTACTTTTATTGTAT
TGTAGTGTTAGCAGCAGCAACAACCCACGACAAAAAAAAAATGCAGATCT
GGCTGGCAATGTCGGACGGCACCCTCCTAGACTGTTGCTACTGCAAGGCG
TACGGCGGAAGGAAAGGGGCCGGCCGCAGCAGCGGCAGCAGCGGCGGCAG
TGACGATGGCGTCGGGGAGGGGGACGAGCGGAGGAGCACGGGGTGCGTGC
TCTTCTGCAACCCCAACGCGGGTTTTTACGAGAGCATGGTGTTGGCGGGC
GAGGGTGGTCGCAATTGGTGAGAGAGAGGGGGGAAAGTGCGTGTGCTTCA
TGCCAAGGTTTAATGCATACACGGGGTGAACACATGTCCAAGGCTTTCAT
GTTTATGGGGGGAGGAGGGTTGGGGTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACA
AAAAGGACTTAAACAACAACTTGGAAATTAACACCCACCCATTGGCCCCC
AGTTAGGCATCCTTTAGCCAAGCAAGGCCTTGGCCCCCCCTTCCCCTTGT
TACGGCGGGGGGCCTTTTTATTCTGGGCCCGTTTTTTTTGGAGCTTTTCC
CCGGGGCCCCAGGGGTTCAGGGGGGGCGGGCCAAAGGGGGGAATAGGGGG
TTTCCCGGGGGGGGACGCTCAGGGGGCCGCGGACTCCCGGGCATGTGGTT
GCTCAAGGGGGAGTTCCCGTTAAGGGGGGGGGGCGGGGGCCCGGTTTTTC
CGTTTGTATTTGTCCCGGGGGGGGGGGGGGTGCTGGTGCTGTTGTTAAGT
TTTTGTTGGTGGATGCGGAGGTGGTGATGATTTGATGTGTTTGCTGTTGC
TGTTGCTCTTATTTTTTTGTTCGCTCGTGCAAGATTTTAGGGTGTGGGTG
CATATAAACCAATTTGTTGTTTAACACCTTGCCCCTCTAAATCGCATCGC
CACAACAAAACAATGCAGGTCCTGGCGTGCGATCCGGAGGACATGATCAT
CGCCGACGCTTCCTCCACCAAGGCGGGCGTGTCGGTGATGGTGGAGCTCG
GCGCCGACGCGTCGGCTCTGGACGTCTACCAGCCTCCGAAGGTGCGTAGT
CTACCAGTCTCCGAAGGTGCGCAGTCGTAGGACAAGATGATGCTAGAAGC
GTTGACAGGTGTGTGTGGAAGAGAACTAATCTTGATGGCAGCAGCGTGTG
GGAGGAAGCGGCGCACCGCACGGTTGTTGCAAGGTGTAAAATCGCTTCGC
TTGATTGAAGGATGGATGGGCCAAAGACAACAAACGCTCGATGCAGTATT
TTTGTTTTGTTGTGCGTCTCTCTTGCCTGCACCACTGCTGCCTTGGCTGC
CTAGCATGCGTCCACCGTTGTCGTTGCTTTCGTCCCTGTTGTTGTTACTT
TGCGATTGCCTTCATCATGTTCGCTTATATTATATTTTCCGCCCCTTTCG
CATGCCGTACGACAACCCGTACCCCGCCCCCGCCCCCGGTCTGTCAGGCC
TACAAGGTTACCGACCACTTGAGAACCTGCCCCCCAGTGGAGCGCATGAC
CCTGCCCCTCTACCCACAAGAACGCCTCTCGCCTCTGCAGATCGCTCACT
TCGCGGCATGCCTAAGGTCTGTCTGTGTTTCTGTGCGCGTCTTGTGCACG
GCAGAGTGGGCTAGCTTTCATGCTATCCTTGTGGGTTCAGGCCGTGTTCT
TCTATGGTTGTGCGTTTTCGAATTGCAAGTGCCATCGGTGTGCAATTTCT
GAGTTTGTTTTGTTCTATGCATGAAGTGTGCAACCTCTCTTTTCTTTTTC
GTAAGTCGGTGGTGCGTGGCTCTTGTGTTTCATGGTTCTGTCTACACACG
AGCACCGCAATGTGCGACCTTGGTCGTCTAG
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Coding sequence (CDS) from alignment at chr_00:1066458..1070238+

>Ec-00_000810.1 ID=Ec-00_000810.1|Name=Ec-00_000810.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=558bp|location=Sequence derived from alignment at chr_00:1066458..1070238+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGCAGCACGCAAGACTTCGACCGATCGAGGCAGGCCTTGCTTGTTC
CCGGTGTCCGGAACAACGACCGGAGCGTGGGGGGGGGGGCGCGGGGGAAG
CCGCAGCTGGGAACACCGGCGAGTCTAGGTTCCCGGGGGGAATCGTGAAG
AGCTGGTGGCGGGCTAGGTACCCGTACGAGGGGGCGGCGGGGTTCGGGCT
CATGCGCGAGGAGATGCTCATCAGGAGCAACGCTCGGCAGGTCCTGGCGT
GCGATCCGGAGGACATGATCATCGCCGACGCTTCCTCCACCAAGGCGGGC
GTGTCGGTGATGGTGGAGCTCGGCGCCGACGCGTCGGCTCTGGACGTCTA
CCAGCCTCCGAAGGCCTACAAGGTTACCGACCACTTGAGAACCTGCCCCC
CAGTGGAGCGCATGACCCTGCCCCTCTACCCACAAGAACGCCTCTCGCCT
CTGCAGATCGCTCACTTCGCGGCATGCCTAAGTCGGTGGTGCGTGGCTCT
TGTGTTTCATGGTTCTGTCTACACACGAGCACCGCAATGTGCGACCTTGG
TCGTCTAG
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Synonyms
The feature 'Ec-00_000810.1' has the following synonyms
Synonym
Esi1230_0001
Esi_1230_0001