Ec-00_000800.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000800.1
Unique NameEc-00_000800.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length114
Homology
[Close]
BLAST of Ec-00_000800.1 vs. uniprot
Match: D7FIQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ9_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 3.020e-72
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 
Query:    1 MSILMDGALPGRHGGSSAGGQEALWEEAGEGDEELPSGDVEAVRELVEEATTKGFRSATIDEAANDVAKQDQQKKVFAFFRSLPCAVVDHVTSTSLDIAERSTVQHLAHHMLH 339
            MSILMDGALPGRHGGSSAGGQEALWEEAGEGDEELPSGDVEAVRELVEEATTKGFRSATIDEAANDVAKQDQQKKVFAFFRSLPCAVVDHVTSTSLDIAERSTVQHLAHHMLH
Sbjct:    1 MSILMDGALPGRHGGSSAGGQEALWEEAGEGDEELPSGDVEAVRELVEEATTKGFRSATIDEAANDVAKQDQQKKVFAFFRSLPCAVVDHVTSTSLDIAERSTVQHLAHHMLH 113
[Close]
BLAST of Ec-00_000800.1 vs. uniprot
Match: D7FRC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC7_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 1.560e-61
Identity = 101/106 (95.28%), Postives = 101/106 (95.28%), Query Frame = 1 
Query:   22 ALPGRHGGSSAGGQEALWEEAGEGDEELPSGDVEAVRELVEEATTKGFRSATIDEAANDVAKQDQQKKVFAFFRSLPCAVVDHVTSTSLDIAERSTVQHLAHHMLH 339
            ALPGRHGGSSAGGQEALWEEAGEGDEE PSGDVEAVRELVEEATTKGFRSATIDE ANDVAKQDQQK V AFFRSLPCAVVDHVTSTSLDIAERSTVQHLAHH LH
Sbjct:   54 ALPGRHGGSSAGGQEALWEEAGEGDEEPPSGDVEAVRELVEEATTKGFRSATIDEDANDVAKQDQQKMVLAFFRSLPCAVVDHVTSTSLDIAERSTVQHLAHHTLH 159
[Close]
BLAST of Ec-00_000800.1 vs. uniprot
Match: D7FL02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL02_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 4.110e-47
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 MSILMDGALPGRHGGSSAGGQEALWEEAGEGDEELPSGDVEAVRELVEEATTKGFRSATIDEAANDVAKQDQQKKVFAFFRS 246
            MSILMDGALPGRHGGSSAGGQEALWEEAGEGDEELPSGDVEAVRELVEEATTKGFRSATIDEAANDVAKQDQQKKVFAFFR+
Sbjct:    1 MSILMDGALPGRHGGSSAGGQEALWEEAGEGDEELPSGDVEAVRELVEEATTKGFRSATIDEAANDVAKQDQQKKVFAFFRA 82
[Close]
BLAST of Ec-00_000800.1 vs. uniprot
Match: A0A6H5KMQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ6_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.220e-19
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:  109 SGDVEAVRELVEEATTKGFRSATIDEAANDVAKQDQQKKVFAFFRSLPCAVVDHVTSTSLDIAERS 306
            SGDVE VRELVEEA TKGFRS  IDEAA  V KQ+QQ++V AFFRSLP AVVD+V++TSLD A RS
Sbjct:  227 SGDVETVRELVEEAATKGFRSVAIDEAATAVFKQEQQERVLAFFRSLPGAVVDYVSTTSLDAARRS 292
[Close]
BLAST of Ec-00_000800.1 vs. uniprot
Match: D7G4D4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D4_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.690e-18
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:  106 PSGDVEAVRELVEEATTKGFRSATIDEAANDVAKQDQQKKVFAFFRSLPCAVVDHVTSTSLDIAERS 306
            PSG V+ +R LVEEA TKGFRS  I+EAA  VAKQ+QQ++V AFFRSLP AVVD+V++TSLD A RS
Sbjct:  194 PSGSVDTIRGLVEEAATKGFRSVAIEEAAMVVAKQEQQERVLAFFRSLPGAVVDYVSTTSLDAARRS 260
[Close]
BLAST of Ec-00_000800.1 vs. uniprot
Match: D7FUJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ8_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 3.330e-13
Identity = 47/106 (44.34%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:  106 PSGDVEAVRELVEEATTKGFRSATID-----------------------------------------EAANDVAKQDQQKKVFAFFRSLPCAVVDHVTSTSLDIAE 300
            PSGDV+ +RELVEEA TKGFRS  ID                                          A   VAKQDQQ+K+FAFF SLP AVVD+V++TSLD AE
Sbjct:   34 PSGDVDTIRELVEEADTKGFRSIAIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATTVVAKQDQQEKIFAFFTSLPGAVVDYVSTTSLDAAE 139
[Close]
BLAST of Ec-00_000800.1 vs. uniprot
Match: D7G3D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D5_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.130e-11
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:  106 PSGDVEAVRELVEEATTKGFRSATIDEAANDVAKQDQQKKVFAFFRSLPCAVVDHVTSTSLDIAERSTVQ 315
            P  D+E VR LV+EATTKGFRSA +DEA   V + D Q K FA  RSLP A+   V+ +SL +A  S  Q
Sbjct:  165 PPSDIELVRALVDEATTKGFRSAAMDEATKAVTRHDDQAKAFAVLRSLPGALARQVSKSSLAVARHSKKQ 234
[Close]
BLAST of Ec-00_000800.1 vs. uniprot
Match: D7FRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE6_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 5.230e-11
Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:  106 PSGDVEAVRELVEEATTKGFRSATIDEAANDVAKQDQQKKVFAFFRSLPCAVVDHVTSTSLDIAERSTVQ 315
            P  D+E VR LV+EATTKGFRSA  DEA   V K D Q+   A FRSLP A V  V   SL +   S  Q
Sbjct:  149 PPSDIELVRALVDEATTKGFRSAATDEATKAVTKHDDQQSAIAIFRSLPGAFVRQVAEASLVVTRHSNKQ 218
[Close]
BLAST of Ec-00_000800.1 vs. uniprot
Match: A0A6H5JBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.350e-8
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   64 EALWEEAGEGDEELPSGDVEAVRELVEEATTKGFRSATIDEAANDVAKQDQQKKVFAFFRSLPCAVV 264
            E + +E   G EELP  D++ VR LV+EATTKGFRS+ IDE    V + D+Q+K F  F S PC +V
Sbjct:   11 ETIHQEDCGGHEELPPSDIKLVRALVDEATTKGFRSSVIDEGMKAVNRHDEQEKAFDIF-SAPCMLV 76
[Close]
BLAST of Ec-00_000800.1 vs. uniprot
Match: A0A6H5JY85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY85_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.100e-6
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:   43 GSSAGGQEALWEEAGEGDEELPSGDVEAVRELVEEATTKGFRSATIDEAANDVAKQDQQKKVFAFFR 243
            G +AG ++    +  +  +  P  D+E VR LV+EATTKGFRSA IDEA     K D Q+   A FR
Sbjct:   61 GPAAGDEKRFTRKLVKATKSSPPSDMELVRALVDEATTKGFRSAAIDEATKAKTKHDDQQSAIAIFR 127
The following BLAST results are available for this feature:
BLAST of Ec-00_000800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FIQ9_ECTSI3.020e-72100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRC7_ECTSI1.560e-6195.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL02_ECTSI4.110e-4798.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMQ6_9PHAE1.220e-1974.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4D4_ECTSI3.690e-1868.66Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FUJ8_ECTSI3.330e-1344.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3D5_ECTSI1.130e-1152.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRE6_ECTSI5.230e-1152.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBW0_9PHAE1.350e-850.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY85_9PHAE1.100e-644.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1063170..1065344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length342
Hectar predicted targeting categoryother localisation
Gene idEc-00_000800.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000800Ec-00_000800Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1063170..1065344 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000800.1.1Ec-00_000800.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1063170..1063189 +
Ec-00_000800.1.2Ec-00_000800.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1063443..1063480 +
Ec-00_000800.1.3Ec-00_000800.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1064168..1064351 +
Ec-00_000800.1.4Ec-00_000800.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1065245..1065344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000800.1CDS:Ec-00_000800.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1063170..1063189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000800.1Ec-00_000800.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1063170..1065344 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000800.1 ID=Ec-00_000800.1|Name=Ec-00_000800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=114bp
MSILMDGALPGRHGGSSAGGQEALWEEAGEGDEELPSGDVEAVRELVEEA
TTKGFRSATIDEAANDVAKQDQQKKVFAFFRSLPCAVVDHVTSTSLDIAE
RSTVQHLAHHMLH*
back to top

spliced messenger RNA

>Ec-00_000800.1 ID=Ec-00_000800.1|Name=Ec-00_000800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=342bp|location=Sequence derived from alignment at chr_00:1063170..1065344+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTATTTTGATGGATGGGGCCCTTCCTGGACGACACGGCGGGAGTTC
GGCTGGAGGACAAGAAGCGCTTTGGGAGGAAGCTGGCGAAGGCGATGAAG
AGCTCCCCTCTGGTGACGTCGAGGCTGTCCGCGAGCTGGTAGAGGAGGCC
ACCACGAAGGGCTTCCGCTCCGCCACCATCGACGAGGCAGCGAACGATGT
CGCCAAACAGGACCAGCAAAAGAAGGTCTTCGCCTTCTTTCGGAGCCTTC
CCTGTGCCGTCGTCGACCACGTCACGAGCACTTCGCTGGATATTGCGGAA
CGTTCTACAGTACAGCACCTCGCCCATCATATGCTACATTGA
back to top

protein sequence of Ec-00_000800.1

>Ec-00_000800.1 ID=Ec-00_000800.1|Name=Ec-00_000800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=114bp
MSILMDGALPGRHGGSSAGGQEALWEEAGEGDEELPSGDVEAVRELVEEA
TTKGFRSATIDEAANDVAKQDQQKKVFAFFRSLPCAVVDHVTSTSLDIAE
RSTVQHLAHHMLH*
back to top

mRNA from alignment at chr_00:1063170..1065344+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000800.1 ID=Ec-00_000800.1|Name=Ec-00_000800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2175bp|location=Sequence derived from alignment at chr_00:1063170..1065344+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGTATTTTGATGGATGGGCGAGTTACAACTCCCACCGACATCAGCGA
AGCTTTCGCCCTGTACTCCACGAAGGTCCTGGGGAAGGCACCTGGGAAGT
CTAATGACGAGGAGAACGGCATTCATTTGAAAGAAGAAGGGGCGCAGGGT
GCATGGACAGCGAAAACATAAGGATTGTCAATGCACTTCATATTTATAGT
CTACATGCCCTTTCGTCCGTCCTTTTCTCGCCTGTCGCTCCCCTTTTCAC
TTTACTTCCCACGATCATCCCAGGGCCCTTCCTGGACGACACGGCGGGAG
TTCGGCTGGAGGTAATAGTTTGTTCCACAACGCCCATTTTCTACACGCTT
TTTATGGGTCGTTGGGCACGGCGTAGACATCGGAAGAGAGCTTTCACACG
CGAGCAGAGCGAACAATTATCGTACCTGAGATTGTTTGCATTCACATATT
GCACCCCCCGGCACGGGGATCGAACTTTTGGCGATAGATTGGAGAGTAAT
AGCAAGAGAATTTGACCCCTCCGCGTTCGGCAGTACCGTTGACCGTCCAC
AAAAACACATCGGTTTCGTTGTCTGGCGCATGTACTGACAGCAGAATATT
TGAAACTTGAAGTTAGAATTTCCGAGTATTAGTGTCACCAGAAAAAAAAT
AGACGAGGTTGAGGGAACGTACAGTACTATCACGGGCAGGGTATTCAGTT
GCGGGCAGTTATATACCGGTATGACTGTGCTGCACGTGTCTGTTATGCCG
GTGGAATCAGACGAGAGGCCCAGAAACCAGTATCAGCCACAGCTTGAGAC
TCCGAACGATGCCTGAAGGAACCAAACCTCTCACCAGGGAATAAACACCT
GTAGTGTATTTCCTCGCCTTCTTTTCGCGCCCGCGAAGAACATGAACATC
GACACAAAATGCATACTGGCACACACACACAATAATTTCGTTGTTGTTGC
TACGTCTGTAACATCGTTTGCTCCACTACAATATTCCTCATTTTGCAGGA
CAAGAAGCGCTTTGGGAGGAAGCTGGCGAAGGCGATGAAGAGCTCCCCTC
TGGTGACGTCGAGGCTGTCCGCGAGCTGGTAGAGGAGGCCACCACGAAGG
GCTTCCGCTCCGCCACCATCGACGAGGCAGCGAACGATGTCGCCAAACAG
GACCAGCAAAAGAAGGTCTTCGCCTTCTTTCGGTGAGAAATGTGTGCAGG
CGCTGTTCATATTGTGATGTTTATGTTGCCTTTGCCATGATGGCATGTGG
TGTGAGGCCCGGTAGTCAGTTATCCCCCCGAAAAGTGGTGGGCAATGAAT
ACCATTCGCCAGTCTTTCAAGTGCTTTCTGCGTGCTGGGGGCTCTCGGTG
AAGGGCTGTTTCATAGGCGCGTTTTCACAAGATGCCTTCACTCCGTTTCT
TTCTTTTTTTCCGTGTAGCGCCCCCCCCCCCCCCCCCCGCCCACAAGTCT
TCAGCATGGCTTGTGTGCGGTAAACGCTTCCCGAAAACGTTCAACAATGG
CGGGGTGTCCGTAATCCGACGTGAGATGGCGCCACGGGCCATTCCTGTGT
GTTCAGGTCTGGATTCTCACACGTACGCCTGGAAAACTATAGGTTCTTAC
ATGTAGCGTCATGCAATCTCCCACACTACCGGCAGTTTTGCGAAACCCCC
CACGGAGCAGCTCATGGGCAGCCCATGAACTGCCCGCTAATTGCCCATCG
TGGGCATTTCAACCTAGAACTCGCCAACGGCACATCAACCTAGAACTTAG
CGACACCTAGCACGTATCGTGTGGGCTTGGGGTTAGGGTTAGAATATAAG
CGGTAATAATGCCCTTCCCAAAGCATAAGATCTATGGTTTAGGAGAACAC
TGGCCCCGGTTGAACGACACTCATTCGCCGCCTATGGGCTGCCCACAGGC
CACCCATGGGCTTGCCCGTGGACCTTCCTCATGGGCTTCCTGTGGGCATG
TCCATGAGCATGCCCATAGGAGGCTTAGCAAAACCGTAGAAAGTGCGGGA
GATCCGTAGCGTCTCACACCATTTGTCGGTTCTTTCTTGCACGCATCCCG
TTTCCCGTTTCACATCATTGGGCAGGAGCCTTCCCTGTGCCGTCGTCGAC
CACGTCACGAGCACTTCGCTGGATATTGCGGAACGTTCTACAGTACAGCA
CCTCGCCCATCATATGCTACATTGA
back to top

Coding sequence (CDS) from alignment at chr_00:1063170..1065344+

>Ec-00_000800.1 ID=Ec-00_000800.1|Name=Ec-00_000800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=342bp|location=Sequence derived from alignment at chr_00:1063170..1065344+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGTATTTTGATGGATGGGGCCCTTCCTGGACGACACGGCGGGAGTTC
GGCTGGAGGACAAGAAGCGCTTTGGGAGGAAGCTGGCGAAGGCGATGAAG
AGCTCCCCTCTGGTGACGTCGAGGCTGTCCGCGAGCTGGTAGAGGAGGCC
ACCACGAAGGGCTTCCGCTCCGCCACCATCGACGAGGCAGCGAACGATGT
CGCCAAACAGGACCAGCAAAAGAAGGTCTTCGCCTTCTTTCGGAGCCTTC
CCTGTGCCGTCGTCGACCACGTCACGAGCACTTCGCTGGATATTGCGGAA
CGTTCTACAGTACAGCACCTCGCCCATCATATGCTACATTGA
back to top
Synonyms
The feature 'Ec-00_000800.1' has the following synonyms
Synonym
Esi1226_0001
Esi_1226_0001