Ec-00_000780.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000780.1
Unique NameEc-00_000780.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length109
Homology
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BLAST of Ec-00_000780.1 vs. uniprot
Match: D7FIJ3_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ3_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 1.040e-72
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 MKTFCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATESGGIEHNQSW 324
            MKTFCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATESGGIEHNQSW
Sbjct:    1 MKTFCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATESGGIEHNQSW 108
[Close]
BLAST of Ec-00_000780.1 vs. uniprot
Match: D7FI68_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI68_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 3.090e-62
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 1 
Query:    1 MKTFCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 294
            MKTFCAAAGFVIAAGLM STVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE
Sbjct:    1 MKTFCAAAGFVIAAGLMPSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 98
[Close]
BLAST of Ec-00_000780.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 2.800e-50
Identity = 87/99 (87.88%), Postives = 90/99 (90.91%), Query Frame = 1 
Query:    1 MKT-FCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 294
            MKT FCAAAGFVIAAGLMS+ VQ  GVVT QQQITL+NPEDFVFSLGGPEPDALVDGFQ+R   VNQLPALDGQGISM LVNLDPCAINLPHIHPRATE
Sbjct:    1 MKTSFCAAAGFVIAAGLMSA-VQVCGVVTVQQQITLYNPEDFVFSLGGPEPDALVDGFQLRTAVVNQLPALDGQGISMGLVNLDPCAINLPHIHPRATE 98
[Close]
BLAST of Ec-00_000780.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.060e-48
Identity = 81/99 (81.82%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:    1 MKT-FCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 294
            MKT FC+AAG V+AAG MSST QASGVVTAQQQIT+FNPEDFVF+LGGPEPDA VDGFQIR   + Q+PALDGQGI+MALVNLD C INLPHIHPRATE
Sbjct:    1 MKTSFCSAAGLVVAAGFMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATE 99
[Close]
BLAST of Ec-00_000780.1 vs. uniprot
Match: A0A7S2ZX28_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZX28_9RHOD)

HSP 1 Score: 63.2 bits (152), Expect = 3.900e-10
Identity = 38/99 (38.38%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:    1 MKTFCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPE-DFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 294
            MKT   AA F I A ++  +V A  +   +++I     + DF+F L          G +++   V+Q  ALDG  IS ++  LDPC +NLPH+HPRATE
Sbjct:    2 MKTGLGAAIFAILASILLVSVSAHPLTALEKRIDDHPYDTDFIFHLANVSASDNGVGAKVKAGAVDQFHALDGLRISNSMFTLDPCGMNLPHVHPRATE 100
[Close]
BLAST of Ec-00_000780.1 vs. uniprot
Match: A0A401GC05_9APHY (Cupin type-1 domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GC05_9APHY)

HSP 1 Score: 64.3 bits (155), Expect = 8.650e-10
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:   40 AGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGF--QIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 294
            A L++    A+G  T   ++ L +  DFVF    P P A+  G    +   +V   PA+ G G++MA+  L+PC +N PH+HPRATE
Sbjct:   32 ASLVAQLKTANGAAT---RVNLLSDSDFVFDFENPPPKAITQGAGGHLVLASVADFPAVVGNGLAMAVGFLEPCGLNTPHLHPRATE 115
[Close]
BLAST of Ec-00_000780.1 vs. uniprot
Match: A0A7S3EC99_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC99_9RHOD)

HSP 1 Score: 61.2 bits (147), Expect = 1.190e-9
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:    1 MKTFCAAAGFVIAAGLMS-STVQASGVVTAQQQITLF-NPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 294
            MK    + G V+A   ++ S +    +     +  LF N  DF F L G        G +I+  + ++ PAL+G G+S  L  +DPC +NLPH+HPRATE
Sbjct:    1 MKAGTLSFGLVLAVSALAVSAMYDPSIEVRDLRAELFPNASDFKFDLAGAPASDNGVGAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATE 100
[Close]
BLAST of Ec-00_000780.1 vs. uniprot
Match: A0A7S2ZJB7_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZJB7_9RHOD)

HSP 1 Score: 61.2 bits (147), Expect = 4.550e-9
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:    1 MKTFCAAAGFVIAAGLMS-STVQASGVVTAQQQITLF-NPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 294
            MK    + G V+A   ++ S +    +     +  LF N  DF F L G        G +I+  + ++ PAL+G G+S  L  +DPC +NLPH+HPRATE
Sbjct:    1 MKAGTLSFGLVLAVSALAVSAMYDPSIEVRDLRAELFPNASDFKFDLAGAPASDNGVGAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATE 100
[Close]
BLAST of Ec-00_000780.1 vs. uniprot
Match: A0A0G4IUK5_PLABS (Cupin type-1 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IUK5_PLABS)

HSP 1 Score: 60.8 bits (146), Expect = 7.260e-9
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:  109 NPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 294
            NP+ F +    P       G  +R   + +LP L G GI+++LV+L  CAIN PHIHPRATE
Sbjct:   44 NPDQFFYDFSKPVKITQGPGGSLRTCGIEELPTLAGMGIAVSLVDLKACAINNPHIHPRATE 105
[Close]
BLAST of Ec-00_000780.1 vs. uniprot
Match: A0A7S0G545_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G545_9RHOD)

HSP 1 Score: 58.5 bits (140), Expect = 9.780e-9
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:  115 EDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 294
            +DF F+L G        G +I+  +  + PAL+G G+S  L  +DPC +NLPH+HPRATE
Sbjct:   24 KDFKFNLAGAPASNNGVGAKIQGGSQARFPALNGLGVSYTLFTIDPCGMNLPHVHPRATE 83
The following BLAST results are available for this feature:
BLAST of Ec-00_000780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIJ3_ECTSI1.040e-72100.00Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
D7FI68_ECTSI3.090e-6298.98Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JV79_9PHAE2.800e-5087.88Cupin type-1 domain-containing protein n=6 Tax=Ect... [more]
D8LDW6_ECTSI1.060e-4881.82Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S2ZX28_9RHOD3.900e-1038.38Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A401GC05_9APHY8.650e-1037.93Cupin type-1 domain-containing protein n=1 Tax=Spa... [more]
A0A7S3EC99_9RHOD1.190e-936.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZJB7_9RHOD4.550e-936.00Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A0G4IUK5_PLABS7.260e-945.16Cupin type-1 domain-containing protein n=1 Tax=Pla... [more]
A0A7S0G545_9RHOD9.780e-945.00Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1032099..1033006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.4
Seed ortholog evalue6.7e-48
Seed eggNOG ortholog2880.D8LDW5
Length327
Hectar predicted targeting categorysignal peptide
Gene idEc-00_000780.1
EggNOG free text desc.nutrient reservoir activity
EggNOG OGs2BYKQ@1,2QQ4A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000780Ec-00_000780Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1032099..1033006 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000780.1.1Ec-00_000780.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1032099..1032188 +
Ec-00_000780.1.2Ec-00_000780.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1032567..1032770 +
Ec-00_000780.1.3Ec-00_000780.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1032974..1033006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000780.1CDS:Ec-00_000780.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1032099..1032188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000780.1Ec-00_000780.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1032099..1033006 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000780.1 ID=Ec-00_000780.1|Name=Ec-00_000780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=109bp
MKTFCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEP
DALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATESG
GIEHNQSW*
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spliced messenger RNA

>Ec-00_000780.1 ID=Ec-00_000780.1|Name=Ec-00_000780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=327bp|location=Sequence derived from alignment at chr_00:1032099..1033006+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACCTTCTGCGCTGCTGCTGGATTTGTCATCGCCGCTGGGCTCAT
GTCGTCTACGGTGCAGGCGTCCGGCGTCGTCACTGCGCAGCAACAAATCA
CCTTGTTCAACCCCGAGGACTTCGTGTTCAGCCTCGGCGGTCCTGAGCCC
GATGCACTGGTGGACGGCTTCCAGATCCGTTTCGTCAATGTGAACCAGCT
GCCGGCTCTGGACGGACAAGGCATCTCGATGGCCCTTGTGAACCTCGACC
CATGCGCCATCAATCTGCCTCACATCCACCCGCGTGCCACGGAGTCTGGA
GGTATCGAGCACAATCAATCTTGGTAG
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protein sequence of Ec-00_000780.1

>Ec-00_000780.1 ID=Ec-00_000780.1|Name=Ec-00_000780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=109bp
MKTFCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEP
DALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATESG
GIEHNQSW*
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mRNA from alignment at chr_00:1032099..1033006+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000780.1 ID=Ec-00_000780.1|Name=Ec-00_000780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=908bp|location=Sequence derived from alignment at chr_00:1032099..1033006+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAGACCTTCTGCGCTGCTGCTGGATTTGTCATCGCCGCTGGGCTCAT
GTCGTCTACGGTGCAGGCGTCCGGCGTCGTCACTGCGCAGGTACAGATAA
AGTCATGAAAGAACGAGAGAGGCGCTTTACATACAGTCATGTTCTACTGC
GGTACTATGGCTGTAGCTACTGTAGCGAGCAGCGCAGACGAAGTTTGTGG
TCCGGTGCTCGGCTGCGCGCTGCTGTAGAGCAGGACTCCGGCACATCCGG
AGTGCGCATGATGCAGCGTGCGAAACATCGGCCCGAGCCCGAGAGCTTGG
TCCGGCGATTCGTTGCTACAATTTTGGGGTTACAATTTTGCTGTATGGAC
CAGCTCATGAGTTCTCGACTCGCCACGACATGCTTTTACTCCCTCAGTGC
TGTAGATGGCTCGACAACGCCCCCCTGATTTCGATGCTGCCCTTCGTGTT
CCCCCTTCGCGCGTTCAGCAACAAATCACCTTGTTCAACCCCGAGGACTT
CGTGTTCAGCCTCGGCGGTCCTGAGCCCGATGCACTGGTGGACGGCTTCC
AGATCCGTTTCGTCAATGTGAACCAGCTGCCGGCTCTGGACGGACAAGGC
ATCTCGATGGCCCTTGTGAACCTCGACCCATGCGCCATCAATCTGCCTCA
CATCCACCCGCGTGCCACGGAGGTGAACGAGCCTTCAGCGTTCAATGGAC
GGTTGTTTCCCAATCCGCTGCCGTGCTGTACTGCTGTAGCGCTATGTAAT
TCTTGTGAAACTCCTCTCATTCTCGGTTTTGGGTTAGACTAAAGGTCTCA
TTCTCCATCTTACGTCAAAAGATATTGCAACAGATTGATCTTGTATACTA
CACCTACACTCATGTGTAAGAACAGTCTGGAGGTATCGAGCACAATCAAT
CTTGGTAG
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Coding sequence (CDS) from alignment at chr_00:1032099..1033006+

>Ec-00_000780.1 ID=Ec-00_000780.1|Name=Ec-00_000780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=327bp|location=Sequence derived from alignment at chr_00:1032099..1033006+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAGACCTTCTGCGCTGCTGCTGGATTTGTCATCGCCGCTGGGCTCAT
GTCGTCTACGGTGCAGGCGTCCGGCGTCGTCACTGCGCAGCAACAAATCA
CCTTGTTCAACCCCGAGGACTTCGTGTTCAGCCTCGGCGGTCCTGAGCCC
GATGCACTGGTGGACGGCTTCCAGATCCGTTTCGTCAATGTGAACCAGCT
GCCGGCTCTGGACGGACAAGGCATCTCGATGGCCCTTGTGAACCTCGACC
CATGCGCCATCAATCTGCCTCACATCCACCCGCGTGCCACGGAGTCTGGA
GGTATCGAGCACAATCAATCTTGGTAG
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Synonyms
The feature 'Ec-00_000780.1' has the following synonyms
Synonym
Esi1203_0002
Esi_1203_0002