Ec-00_000760.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000760.1
Unique NameEc-00_000760.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length47
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_000760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1006458..1008324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length141
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_000760.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000760Ec-00_000760Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1006458..1009143 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000760.1.1Ec-00_000760.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1006458..1006518 +
Ec-00_000760.1.2Ec-00_000760.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1008245..1008324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000760.1CDS:Ec-00_000760.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1006458..1006518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000760.1Ec-00_000760.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1006458..1008324 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000760.1 ID=Ec-00_000760.1|Name=Ec-00_000760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=47bp
MQRPVHLIRFTERSISLRETERVDTVAPNEPVNLMCSFRWKGSCEH*
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spliced messenger RNA

>Ec-00_000760.1 ID=Ec-00_000760.1|Name=Ec-00_000760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=141bp|location=Sequence derived from alignment at chr_00:1006458..1008324+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGCCCTGTACACCTCATCCGCTTCACGGAGCGTTCAATTTCGTT
GAGGGAGACAGAACGAGTCGACACCGTGGCACCGAACGAACCCGTGAATC
TGATGTGTTCATTCCGGTGGAAAGGATCTTGCGAACACTGA
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protein sequence of Ec-00_000760.1

>Ec-00_000760.1 ID=Ec-00_000760.1|Name=Ec-00_000760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=47bp
MQRPVHLIRFTERSISLRETERVDTVAPNEPVNLMCSFRWKGSCEH*
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mRNA from alignment at chr_00:1006458..1008324+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000760.1 ID=Ec-00_000760.1|Name=Ec-00_000760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1867bp|location=Sequence derived from alignment at chr_00:1006458..1008324+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGCGCCCTGTACACCTCATCCGCTTCACGGAGCGTTCAATTTCGTT
GAGGGAGACAGGTAAGAGGTTCCGATGGAGAAATTGAACAATACCGGAGA
CGGCAATGGTTTGCGGCACTTGTTGCAGTTGTTGCCCGTACCTCCTCGAT
TGGCTGATCAGTCAGCTTTGCTCTGTGCAGTTCCTAGTGTTTCTTTCGAG
TCTGCAGTTCAAAACTTCGATTTTTTCCGAGGAAGCTGCATCTGCGCGCT
ATCTCTGAAGTACCTCTGTAATGCCGTCCGGTGTTGGCCATTGCAACCAC
GATTGTTTCAGGGTGCTCAACCCAGAAATCCAAAAGATGTCGTTCGATCT
AATGGAGGGATATTCCTTTATTCGCCAAGCTATTGCCGAGAAATCAGACA
CATGCATCTTGCTGTGCGGAGTAATGTACAGATTTATTTTGTTTTCTTTC
GAATTGCTTCATTATTTCTTCGGTTTCTAGGCTACGTGTTGGGGAGAGAG
ACGCACGAAACGCTCATCGTCTCTCTGGCCGCGTTAGCTGCAAAGGCCGG
CGTCAACTCTTACAAATCCATCTCTCTCACCACAAATACTAGCCGGGGGA
CTACGACTGCAAACGCAGGAGTCCCAAAACTGACCAAGTCCTCAAATGGT
ACACACCATTCTACAACACCTGACTAGATACCGAATATTCCCGAACTTAT
GCCCCCACCTTCGAAAGAAAAGGGATGGGAGGGCGGGATTTTCTAAACTG
CCGCCGCTACTGCGTTAGGCGGCTGCTGCTGTCCTTCCGTTGCTTCACGC
GCTCTGTAGCTGTCACACGTTACCCGACTTTGCTACAGCCCCTGCGTGGA
CTCGATCACGGAATGACACCCCCAACTATAGACTAATAATTCCAAACACC
GTGACCCTGGGTTTCCGGTAGAAAATGAAGCCAAATTCTAATTCGACTGT
TACAAAATAAACACCAGTTTATTCTATCTGCTTCGACGAACAAACCTTCC
TATTACTGTATTACATCCCTTTGTTTTGTGCTCCCGTGCTCGAAACCTAT
ACCTGAGAGTTGCATGTGAGTCGTCATCTCGAACGGCCTCCTTTGAGTGT
GTGAATGTTTCCTAAAAGCTGAGTCTGGAGGCTGCATCATGCTACTAGAA
GTATACTCACAAGATGTCGCGATGCATTGAACTTACTTGATATTAGAGTG
GACGCACGTGGGGTGCATAGACTATGTACTGTATTGTACGATAGTTGGTT
TTTTTTGGCCGCGCCACAAGGAGCCTTGGTTAACCCTAACCCTAACCCTA
ACCCAAAACACTACTGGCAACAAGGGAACTCCTGCATTCACCAATGCGTA
AACCTCGGACAAAGTGGAGTACTGTCGTCTCATATGGTGGTGGCCGTTGC
AGAATCCAGTTGTTCCAAGTAGAAACTTCGGAGGACATGAACGACATGAC
CTTTGGATTGCAAACAAACCCATGTGAAATGGATCGATCACCTGAATACC
ATGATGCCGAAATTTCATCGGCTTCGGTCCTTCACTTGAAGTGGTACATC
CCTCTTTCTTCAGGCCCACATACCTGCCGCTGCAATCGCTGACCATGTTG
CAACAACAAGAACAACCCGACCGAGGAGCCGGATCACTGTTGTGCACAAC
AAACGACGCATCTCGTTGTCTATGGCCACCGACTTTCCATCAGCCTTGCA
TTGCTCGTTAAACATCAAAACAATCAAACATCATCATATGCGATGGAAAA
TGCGACGCTGCGGCACCATTTCTCGTTAATCGATCAGAACGAGTCGACAC
CGTGGCACCGAACGAACCCGTGAATCTGATGTGTTCATTCCGGTGGAAAG
GATCTTGCGAACACTGA
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Coding sequence (CDS) from alignment at chr_00:1006458..1008324+

>Ec-00_000760.1 ID=Ec-00_000760.1|Name=Ec-00_000760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=141bp|location=Sequence derived from alignment at chr_00:1006458..1008324+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGCGCCCTGTACACCTCATCCGCTTCACGGAGCGTTCAATTTCGTT
GAGGGAGACAGAACGAGTCGACACCGTGGCACCGAACGAACCCGTGAATC
TGATGTGTTCATTCCGGTGGAAAGGATCTTGCGAACACTGA
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Synonyms
The feature 'Ec-00_000760.1' has the following synonyms
Synonym
Esi1192_0001
Esi_1192_0001