Ec-00_000750.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000750.1
Unique NameEc-00_000750.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length118
Homology
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BLAST of Ec-00_000750.1 vs. uniprot
Match: D7FI96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI96_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 3.740e-86
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 MHWKTTRYTGIAFSGLNPWRKCFRGGVTSRPALELPKSTRAPGGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGKSMVADRWMEYMRMP 351
            MHWKTTRYTGIAFSGLNPWRKCFRGGVTSRPALELPKSTRAPGGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGKSMVADRWMEYMRMP
Sbjct:    1 MHWKTTRYTGIAFSGLNPWRKCFRGGVTSRPALELPKSTRAPGGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGKSMVADRWMEYMRMP 117
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BLAST of Ec-00_000750.1 vs. uniprot
Match: D7G946_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G946_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 3.810e-36
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:  127 GGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGKSM 315
            GGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFG+SM
Sbjct:  209 GGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSM 271
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BLAST of Ec-00_000750.1 vs. uniprot
Match: A0A6H5JBB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB3_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.870e-35
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:  127 GGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGKSMVADR 327
            GGYM+KGDPIYSLTANKHGLHVRFSNLE+IEDYHDGLDMPLDWDA TGEWVHVEIITTFGKSMV  R
Sbjct:  150 GGYMIKGDPIYSLTANKHGLHVRFSNLETIEDYHDGLDMPLDWDAVTGEWVHVEIITTFGKSMVVRR 216
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BLAST of Ec-00_000750.1 vs. uniprot
Match: A0A6H5JXY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY2_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.650e-35
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:  127 GGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGKSMVAD 324
            GGYM+KGDPIYSLTANKHGLHVRFSNLE+IEDYHDGLDMPLDWDA TGEWVHVEIITTFGKSMV +
Sbjct:   76 GGYMIKGDPIYSLTANKHGLHVRFSNLETIEDYHDGLDMPLDWDAVTGEWVHVEIITTFGKSMVVN 141
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BLAST of Ec-00_000750.1 vs. uniprot
Match: A0A6H5KQZ0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ0_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.060e-34
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:  127 GGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGKSM 315
            GGYM+KGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFG+SM
Sbjct:  252 GGYMIKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSM 314
[Close]
BLAST of Ec-00_000750.1 vs. uniprot
Match: D8LDH2_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH2_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 7.980e-33
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:  136 MVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGKSM 315
            MVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFG+SM
Sbjct:    1 MVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSM 60
[Close]
BLAST of Ec-00_000750.1 vs. uniprot
Match: D8LDH3_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH3_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 7.090e-16
Identity = 38/63 (60.32%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:  127 GGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGKSM 315
            GG+ +KG+P++S+TAN +G++VRF+N ES  D  +G+D  L W+ ATGEWVHVEI TTFGKSM
Sbjct:  153 GGFQLKGNPLFSVTANNNGINVRFNNEES--DKVEGMDDTLSWEDATGEWVHVEIRTTFGKSM 213
The following BLAST results are available for this feature:
BLAST of Ec-00_000750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FI96_ECTSI3.740e-86100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G946_ECTSI3.810e-3698.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBB3_9PHAE1.870e-3592.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXY2_9PHAE2.650e-3592.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQZ0_9PHAE1.060e-3496.83WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDH2_ECTSI7.980e-3398.33WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDH3_ECTSI7.090e-1660.32WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:987077..988686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue6.4e-28
Seed eggNOG ortholog2880.D8LDH2
Length354
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Gene idEc-00_000750.1
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000750Ec-00_000750Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 987077..988686 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000750.1.1Ec-00_000750.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 987077..987203 +
Ec-00_000750.1.2Ec-00_000750.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 988391..988581 +
Ec-00_000750.1.3Ec-00_000750.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 988651..988686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000750.1CDS:Ec-00_000750.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 987077..987203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000750.1Ec-00_000750.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 987077..988686 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000750.1 ID=Ec-00_000750.1|Name=Ec-00_000750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=118bp
MHWKTTRYTGIAFSGLNPWRKCFRGGVTSRPALELPKSTRAPGGYMVKGD
PIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITT
FGKSMVADRWMEYMRMP*
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spliced messenger RNA

>Ec-00_000750.1 ID=Ec-00_000750.1|Name=Ec-00_000750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=354bp|location=Sequence derived from alignment at chr_00:987077..988686+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTGGAAGACTACCAGATACACTGGGATTGCGTTTTCGGGCCTGAA
TCCTTGGAGGAAGTGTTTCAGAGGGGGGGTGACTTCACGACCTGCCCTGG
AGCTACCAAAGAGCACCCGTGCTCCAGGTGGCTACATGGTCAAGGGCGAC
CCGATCTACTCCCTCACCGCCAACAAGCACGGGCTGCACGTTCGCTTCAG
CAACTTGGAGTCCATCGAAGACTACCACGACGGCTTGGACATGCCGCTGG
ACTGGGATGCCGCCACCGGGGAGTGGGTGCACGTGGAAATCATCACCACC
TTCGGGAAGTCCATGGTGGCCGACCGATGGATGGAATACATGCGCATGCC
ATGA
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protein sequence of Ec-00_000750.1

>Ec-00_000750.1 ID=Ec-00_000750.1|Name=Ec-00_000750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=118bp
MHWKTTRYTGIAFSGLNPWRKCFRGGVTSRPALELPKSTRAPGGYMVKGD
PIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITT
FGKSMVADRWMEYMRMP*
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mRNA from alignment at chr_00:987077..988686+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000750.1 ID=Ec-00_000750.1|Name=Ec-00_000750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1610bp|location=Sequence derived from alignment at chr_00:987077..988686+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCATTGGAAGACTACCAGATACACTGGGATTGCGTTTTCGGGCCTGAA
TCCTTGGAGGAAGTGTTTCAGAGGGGGGGTGACTTCACGACCTGCCCTGG
AGCTACCAAAGAGCACCCGTGCTCCAGGTAAGGGGTCGTTGTCGGGGGGG
GTTCATGCAAAGCACAACGTTTTCCGCTTCCTGTTTTCGTTGCGATATCC
CTGCGGTCAGCACTGAGATAAAGTGTAGGACTTCTGGACATGCAACGATG
GTGCCGTTGCGTTCAGGTTTCAAGGCGATTTCTTGAGATAATTTTTATGC
GAACTCTGAACGGGGCGCCCCCCCCCCCCCCCCCCAAACCCCCCCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAATTTCACCGCGTGGACTCTTATGGCTACACGAAAGGCCCGCGTGTAC
GATATAAATAACAGCCAGGGAGTCAAGTCCACATTGATACTCCGCGACCA
ACGAGATGATTGCCGCAAGGGACAGGGATTCAGGCGATTTTGCGGTAAAT
AAATGGTTCACGCGAAACACAGCTTCTTGAACGTTGCCGAGGCAATGCCA
AACGAAAACATGTCAACTGCCTGCCAGTCAGCCTGGATTTGATTCACCAA
GCGTAGACTATGTATGATGAATACAATATTATCAACCGATCCCCTTCGAC
TGTGGCGTCATCTCGAGCGGGTAGTCTCTCGTTGATCGTACATTTCCTAA
TGTAGTCTATGTTGCCGTTGCTTGGATTGAACACTGCCATCCCTTCAGCT
CAAGGGCTCGGCAGGTGGCTACATGGTCAAGGGCGACCCGATCTACTCCC
TCACCGCCAACAAGCACGGGCTGCACGTTCGCTTCAGCAACTTGGAGTCC
ATCGAAGACTACCACGACGGCTTGGACATGCCGCTGGACTGGGATGCCGC
CACCGGGGAGTGGGTGCACGTGGAAATCATCACCACCTTCGGGAAGTCCA
TGGTGGTACGTCGAACCGACTTTGTGAAACGTCATTTTAGTTGTGTGGCT
TTTATAGGATATTGTTCTTGACAGGCCGACCGATGGATGGAATACATGCG
CATGCCATGA
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Coding sequence (CDS) from alignment at chr_00:987077..988686+

>Ec-00_000750.1 ID=Ec-00_000750.1|Name=Ec-00_000750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=354bp|location=Sequence derived from alignment at chr_00:987077..988686+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCATTGGAAGACTACCAGATACACTGGGATTGCGTTTTCGGGCCTGAA
TCCTTGGAGGAAGTGTTTCAGAGGGGGGGTGACTTCACGACCTGCCCTGG
AGCTACCAAAGAGCACCCGTGCTCCAGGTGGCTACATGGTCAAGGGCGAC
CCGATCTACTCCCTCACCGCCAACAAGCACGGGCTGCACGTTCGCTTCAG
CAACTTGGAGTCCATCGAAGACTACCACGACGGCTTGGACATGCCGCTGG
ACTGGGATGCCGCCACCGGGGAGTGGGTGCACGTGGAAATCATCACCACC
TTCGGGAAGTCCATGGTGGCCGACCGATGGATGGAATACATGCGCATGCC
ATGA
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Synonyms
The feature 'Ec-00_000750.1' has the following synonyms
Synonym
Esi1183_0001
Esi_1183_0001