Ec-00_000740.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_000740.2
Unique Name	Ec-00_000740.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	181

Homology

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BLAST of Ec-00_000740.2 vs. uniprot
Match: D8LNK5_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK5_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.730e-18
Identity = 50/58 (86.21%), Postives = 50/58 (86.21%), Query Frame = 2

Query:  167 AAYGAYVLGKFDVARRGEEGYHSGGTRLVLMIVCIASALIVYDWLAYLVLMILGKDSG 340
            AAYGAYVLG FDVARRGE GYHSGGTRLVLMIVCI SALIVYDWLAY VL    KDSG
Sbjct:  575 AAYGAYVLGTFDVARRGERGYHSGGTRLVLMIVCIVSALIVYDWLAYFVLTFPCKDSG 632

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BLAST of Ec-00_000740.2 vs. uniprot
Match: A0A6H5JBW2_9PHAE (Ferric oxidoreductase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.430e-11
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 3

Query:   36 TGPLSVTWPVDRSAYDGVSIEQVMGKNPIAASLNHSVRILVAGT 167
            TGPLSVTW VD SAY GVS EQVMGKNPI+ASL HSVRIL+AGT
Sbjct:  213 TGPLSVTWHVDPSAYGGVSKEQVMGKNPISASLKHSVRILLAGT 256

The following BLAST results are available for this feature:

BLAST of Ec-00_000740.2 vs. uniprot

BLAST of Ec-00_000740.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LNK5_ECTSI	2.730e-18	86.21	Ferric reductase n=1 Tax=Ectocarpus siliculosus Ta...	[more]
A0A6H5JBW2_9PHAE	2.430e-11	84.09	Ferric oxidoreductase domain-containing protein n=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:967206..977605 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	1279
Hectar predicted targeting category	other localisation
Gene id	Ec-00_000740.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_000740	Ec-00_000740	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 967206..977605 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000740.2	Ec-00_000740.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 976861..977403 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000740.2.1	Ec-00_000740.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 967206..967236 +
Ec-00_000740.2.2	Ec-00_000740.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 967683..967819 +
Ec-00_000740.2.3	Ec-00_000740.2.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 968184..968364 +
Ec-00_000740.2.4	Ec-00_000740.2.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 976676..977605 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000740	5UTR:Ec-00_000740.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 967206..967236 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000740.2	CDS:Ec-00_000740.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 976861..977403 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000740	3UTR:Ec-00_000740.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 977404..977605 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:967206..977605+
coding sequence from alignment at chr_00:967206..977605+

mRNA sequence

>Ec-00_000740.2 ID=Ec-00_000740.2|Name=Ec-00_000740.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=181bp
MLHERSFHEWQGCKHPRDSAAVKSSSCAGASAGGMLNVKQHHRQVTPHNT
REDMCSQARQCKLVWLLGSKDFFSAVLCSFQERVQKGRHVLSQNASLMQA
SRSSMTRHNQSRANEQQRQPENIHQAKTVQDQVQPTLHQKGNPFPQPPPL
RSLFPASVDMTPPKKEIERGGSRASFGSNM*

spliced messenger RNA

>Ec-00_000740.2 ID=Ec-00_000740.2|Name=Ec-00_000740.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1279bp|location=Sequence derived from alignment at chr_00:967206..977605+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
NNTCACGCTGTCGCTCTACTGCACCAGCAAGACCGATACTGGCCCTCTGA
GCGTGACATGGCCTGTGGACCGCAGCGCCTACGACGGCGTTTCCATTGAG
CAGGTCATGGGCAAGAACCCCATCGCCGCGAGCCTCAACCACAGCGTCCG
CATCCTCGTCGCAGGCACTGCGGCATACGGCGCGTACGTCCTGGGCAAGT
TCGACGTCGCTCGTCGTGGGGAGGAAGGATATCACTCAGGTGGCACCCGA
CTGGTGCTCATGATCGTTTGCATCGCCAGCGCTCTCATCGTGTACGACTG
GCTGGCCTACCTTGTTCTGATGATCCTGGGCAAGGACAGTGGGGCCAAGG
ATGTGTTGTAGTCTAACGCTTCGGACCGAGGTCGCCAATACGAAGCATCT
AAACATTGTTGGGCGCAACATGCCATGTGCGAAATATGGCACAAAGATTA
ACCCGCTTCATCTTTGTGTTCTCCCTCCAAGATAGCAAGAGAGGGGTGAG
GCGGTAAATCGTTTGTGATATATAGTGAGTAAACATGTTGCATGAACGGT
CTTTTCATGAATGGCAGGGCTGCAAACATCCAAGAGACTCTGCTGCAGTC
AAATCCTCCTCATGTGCTGGTGCATCTGCAGGAGGCATGCTAAACGTCAA
GCAACATCATCGCCAGGTTACACCACACAACACAAGGGAGGACATGTGTT
CGCAAGCACGGCAGTGCAAGCTCGTTTGGTTGTTGGGTTCAAAAGATTTT
TTTTCAGCAGTCCTTTGTTCATTCCAAGAGAGAGTGCAAAAGGGAAGACA
TGTACTATCGCAGAACGCCTCTCTAATGCAGGCATCCCGGTCAAGTATGA
CACGGCATAACCAATCAAGGGCAAACGAGCAACAGCGACAACCGGAAAAC
ATCCACCAGGCTAAAACGGTGCAAGACCAGGTGCAGCCGACACTACACCA
AAAAGGGAACCCCTTCCCCCAGCCCCCTCCCCTGCGGTCGTTATTTCCTG
CATCGGTCGACATGACACCTCCCAAAAAGGAAATAGAACGCGGCGGCAGC
AGAGCATCATTCGGCTCCAATATGTAAGGAGGAAGAGGCGGTCCCCTCCC
CCCATCCCAGCTCACGATTAAAACGTAAATCACAACACGACACCGCTANN
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protein sequence of Ec-00_000740.2

>Ec-00_000740.2 ID=Ec-00_000740.2|Name=Ec-00_000740.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=181bp
MLHERSFHEWQGCKHPRDSAAVKSSSCAGASAGGMLNVKQHHRQVTPHNT
REDMCSQARQCKLVWLLGSKDFFSAVLCSFQERVQKGRHVLSQNASLMQA
SRSSMTRHNQSRANEQQRQPENIHQAKTVQDQVQPTLHQKGNPFPQPPPL
RSLFPASVDMTPPKKEIERGGSRASFGSNM*

mRNA from alignment at chr_00:967206..977605+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_000740.2 ID=Ec-00_000740.2|Name=Ec-00_000740.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=10400bp|location=Sequence derived from alignment at chr_00:967206..977605+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
NNTCACGCTGTCGCTCTACTGCACCAGCAAGGTCAGAGCATCGATACAAC
CGCGAGACAAAAGCGTCAAGTAGAGGCGTCCCCGTCTGTACCCAGGGAGA
AGCATATTTTTCCGGCACTCTACTATTTTACGTTGAGGTTGTTGTCCGCT
CGCCTGCGGTTGGGTGGACGCAACGTACAGACAGCGTCTGGCGTCGATGC
AAAATTCGTTTGGCGTTGTTTGACGGCGCGCTTGTAGCCAAACGTGTCAT
TATTTTGTGGGCATTGAACTATGGACACTCCAGCGAAAGACAACTAGGGA
ATGTTCTCAAGCCCCCAGCACCGTTTCACGCTGTTTATTGCACCAGGTAT
CTAATGTGTAGCGTCCAGTAGAGCGTTAGTGACATGAGGGTAGTCTTGAG
CTCACGACACCCCCGCCCCCCAACGAATATTCGAATTTCGCCTTTTGGGT
CAATGAAACAACTACATTGCTGTGCAGACCGATACTGGCCCTCTGAGCGT
GACATGGCCTGTGGACCGCAGCGCCTACGACGGCGTTTCCATTGAGCAGG
TCATGGGCAAGAACCCCATCGCCGCGAGCCTCAACCACAGCGTCCGCATC
CTCGTCGCAGGCACGTCAGCGATCAGCATAGAGCGAACACGAACACGTTT
CCGAGTACTACGTCGTTAAACAGATTGCCCCGTGTTTTTTTTTTTTGTAG
GATGGCGTTCCTCTTGCACAGTCGATAACGTGCATGTGTGGTAGTGTTCT
CGTCAAAAAGCGTTGTTGATGATGCAGTTCTAACGGCGGAGGGCACGTAT
TTCGTCGTGTCGCCAGGCTCACGAGTGTTATAGCAACCGTTATGCTTGAT
TCCTCGGTTTGCTGTTGTCGCCTCGGAGTTGTCTGTTGTTTGTTTGTTTG
TTGCTGATCTCACCCCGCGACAGCGAGTCCCCTCCACCCGCTCTGATGTG
CCGCTGCTGTTTGTGTCGAGACAGGCAGTGCGGCATACGGCGCGTACGTC
CTGGGCAAGTTCGACGTCGCTCGTCGTGGGGAGGAAGGATATCACTCAGG
TGGCACCCGACTGGTGCTCATGATCGTTTGCATCGCCAGCGCTCTCATCG
TGTACGACTGGCTGGCCTACCTTGTTCTGATGATCCTGGGCAAGGACAGT
GGGGCCAAGGTAAGATGGCGCATCTCACCTGCCGTTTTCTTTCTACCAGG
GCAAGAGCTCACCTACCCGACGAAAATTTACTTAGGACCTNNNNNNNNNN
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NNNNNNNNNTATGCCGGGCATGGGCTCCTTCCTATCATTGAACATTGCCC
ACCAAATGGCACCCACGGCACCCACCTTGCATGGCGAATTTCGTTTGAGG
TTTGGACTACACGGTACGGGAGGGGGCTGCAAACCCGTCATCGCGTGAAA
GCTGAAACTATTAGTCTAACCTCATTGCGGAGTGCACAAGAGGAGGCAAC
ATCACCCGGTATTAAGGCAGTATCAGGGATGATGGCGGTAGGTTGATCGT
GCGAGCCTGCGAGTGTACGATGCGCCACAACATGCAACGCACCCGGTGCA
TGTGCCCACAACGTAAACAGGATGTGTTGTAGTCTAACGCTTCGGACCGA
GGTCGCCAATACGAAGCATCTAAACATTGTTGGGCGCAACATGCCATGTG
CGAAATATGGCACAAAGATTAACCCGCTTCATCTTTGTGTTCTCCCTCCA
AGATAGCAAGAGAGGGGTGAGGCGGTAAATCGTTTGTGATATATAGTGAG
TAAACATGTTGCATGAACGGTCTTTTCATGAATGGCAGGGCTGCAAACAT
CCAAGAGACTCTGCTGCAGTCAAATCCTCCTCATGTGCTGGTGCATCTGC
AGGAGGCATGCTAAACGTCAAGCAACATCATCGCCAGGTTACACCACACA
ACACAAGGGAGGACATGTGTTCGCAAGCACGGCAGTGCAAGCTCGTTTGG
TTGTTGGGTTCAAAAGATTTTTTTTCAGCAGTCCTTTGTTCATTCCAAGA
GAGAGTGCAAAAGGGAAGACATGTACTATCGCAGAACGCCTCTCTAATGC
AGGCATCCCGGTCAAGTATGACACGGCATAACCAATCAAGGGCAAACGAG
CAACAGCGACAACCGGAAAACATCCACCAGGCTAAAACGGTGCAAGACCA
GGTGCAGCCGACACTACACCAAAAAGGGAACCCCTTCCCCCAGCCCCCTC
CCCTGCGGTCGTTATTTCCTGCATCGGTCGACATGACACCTCCCAAAAAG
GAAATAGAACGCGGCGGCAGCAGAGCATCATTCGGCTCCAATATGTAAGG
AGGAAGAGGCGGTCCCCTCCCCCCATCCCAGCTCACGATTAAAACGTAAA
TCACAACACGACACCGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at chr_00:967206..977605+

>Ec-00_000740.2 ID=Ec-00_000740.2|Name=Ec-00_000740.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=543bp|location=Sequence derived from alignment at chr_00:967206..977605+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTGCATGAACGGTCTTTTCATGAATGGCAGGGCTGCAAACATCCAAG
AGACTCTGCTGCAGTCAAATCCTCCTCATGTGCTGGTGCATCTGCAGGAG
GCATGCTAAACGTCAAGCAACATCATCGCCAGGTTACACCACACAACACA
AGGGAGGACATGTGTTCGCAAGCACGGCAGTGCAAGCTCGTTTGGTTGTT
GGGTTCAAAAGATTTTTTTTCAGCAGTCCTTTGTTCATTCCAAGAGAGAG
TGCAAAAGGGAAGACATGTACTATCGCAGAACGCCTCTCTAATGCAGGCA
TCCCGGTCAAGTATGACACGGCATAACCAATCAAGGGCAAACGAGCAACA
GCGACAACCGGAAAACATCCACCAGGCTAAAACGGTGCAAGACCAGGTGC
AGCCGACACTACACCAAAAAGGGAACCCCTTCCCCCAGCCCCCTCCCCTG
CGGTCGTTATTTCCTGCATCGGTCGACATGACACCTCCCAAAAAGGAAAT
AGAACGCGGCGGCAGCAGAGCATCATTCGGCTCCAATATGTAA

Synonyms

The feature 'Ec-00_000740.2' has the following synonyms


Synonym
Esi177_0009
Esi_177_0009