Ec-00_000690.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000690.1
Unique NameEc-00_000690.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length138
Homology
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BLAST of Ec-00_000690.1 vs. uniprot
Match: D7FI18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI18_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 5.240e-59
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:  220 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXXXXXXVHVDGCHVAMAXXXXXXXXVGGH 630
            MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXXXXXXVHVDGCHVAMAXXXXXXXXVGGH
Sbjct:    1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXXXXXXVHVDGCHVAMAXXXXXXXXVGGH 137
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BLAST of Ec-00_000690.1 vs. uniprot
Match: A0A6H5KFP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.980e-49
Identity = 98/125 (78.40%), Postives = 98/125 (78.40%), Query Frame = 1 
Query:  220 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXXXXXXVHVDGCHVAMA 594
            MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAV VGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKG                          VHVDGCHVAMA
Sbjct:    1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGGAGAGGRRYHRTGGDGGSAVV-----VHVDGCHVAMA 120
The following BLAST results are available for this feature:
BLAST of Ec-00_000690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI18_ECTSI5.240e-59100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFP0_9PHAE1.980e-4978.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:916133..918006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length634
Hectar predicted targeting categoryother localisation
Gene idEc-00_000690.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000690Ec-00_000690Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 916133..918006 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000690.1.2Ec-00_000690.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 916133..916435 -
Ec-00_000690.1.1Ec-00_000690.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 917676..918006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000690.1CDS:Ec-00_000690.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 916133..916435 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0006905UTR:Ec-00_000690.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 917787..918006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000690.1Ec-00_000690.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 916133..917786 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000690.1 ID=Ec-00_000690.1|Name=Ec-00_000690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=138bp
MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGLDNLG
SLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGGGGGGGGGGGGR
RYHRTGGDGGSAVVVHVDGCHVAMAAAAAAAAAVGGH*
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spliced messenger RNA

>Ec-00_000690.1 ID=Ec-00_000690.1|Name=Ec-00_000690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=634bp|location=Sequence derived from alignment at chr_00:916133..918006- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CCACAATCTCCTCCCTAGTCGGCGCGCAGCTCTACGCTCCGCGATCCACA
GGGGCAGTCTTTGGTCGGATCCTTGCTGTTTTCGGGGCTCGAGGGCTGTG
CCCGCGTGCTCCGCGAGCCAGAAGTGCCAACGAAAAGGTCGGAGTTGAAC
CTTGTTGGAGAGTCGAGTCACCTGTCCTCTGCAGTAGTGTCAGGTGGCAG
ACGGCGGCGCGGGATAAAAAATGGAGGCGATCGAGCTGCTGGGGGGGATG
GTGAACAGCGTGCTGGAGTTCCCGCTGGTTGGGTTCCTGGGTCGGCTGGT
ACCCGTGGGTGGGAGCGAAGCCGGGCAGCAGGTCGCCACCGCGGTTGCCG
TAGGCCTCGACAACCTCGGCTCTCTCTGCTCACAGGCCGGCCTGGACCGA
TGGGAGCTTCTGGGCCTCGCCGTGCTGTCGGCGATCACCGTCTACCGCAA
GGAGCTGTCCTCCAACAGCGTGTACGGCAAGGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGTAGGCGGTATCACCGCACCGGCGGCGACGGCGGC
AGCGCCGTCGTCGTGCACGTCGACGGCTGCCACGTGGCGATGGCGGCTGC
GGCTGCTGCGGCGGCGGCTGTAGGTGGCCACTAA
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protein sequence of Ec-00_000690.1

>Ec-00_000690.1 ID=Ec-00_000690.1|Name=Ec-00_000690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=138bp
MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGLDNLG
SLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGGGGGGGGGGGGR
RYHRTGGDGGSAVVVHVDGCHVAMAAAAAAAAAVGGH*
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mRNA from alignment at chr_00:916133..918006-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000690.1 ID=Ec-00_000690.1|Name=Ec-00_000690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1874bp|location=Sequence derived from alignment at chr_00:916133..918006- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CCACAATCTCCTCCCTAGTCGGCGCGCAGCTCTACGCTCCGCGATCCACA
GGGGCAGTCTTTGGTCGGATCCTTGCTGTTTTCGGGGCTCGAGGGCTGTG
CCCGCGTGCTCCGCGAGCCAGAAGTGCCAACGAAAAGGTCGGAGTTGAAC
CTTGTTGGAGAGTCGAGTCACCTGTCCTCTGCAGTAGTGTCAGGTGGCAG
ACGGCGGCGCGGGATAAAAAATGGAGGCGATCGAGCTGCTGGGGGGGATG
GTGAACAGCGTGCTGGAGTTCCCGCTGGTTGGGTTCCTGGGTCGGCTGGT
ACCCGTGGGTGGGAGCGAAGCCGGGCAGCAGGTTAGCGTCTCCTGTTTTT
TATCAACGCACCACTTGTTGTTTAGCCCTCGACGCCGGCGGTGTTTTTCT
CTTCTCTCACGCAAGAATTTGACGATTTTCCGTAATGATCTGAGTTACCT
TGTTCTCGTCCCCTCTGGCGGTATGCATAGTAGATGATCCTACAAAATGT
AGCCTCCGTCGCCCCGCCGTCATGTAAGGATACGGGCGGAAGAAATGACT
GCGTGATTATGACTGCCACATTTTTGACGACATGAGTGACGACGACAAAA
GCCGTTTTAGCGCCCCGGGGAAAGTATTAAGGAAAAATAATAAATCTTCC
TACTTCGGCGCCCCTGTGAGACACGAAAGCCGTTGCACTTTCTCCACATC
TCCTCTACATCCCTATCTCAAGACACTCCCAGCAGCCTCTCTCGATTGAA
TTGATCGAGCTGGCTAGGGCTGGATTCCGACGAGGTTCGGAACTGTCACC
TGCGGATCCTAGCGTGATTCACAAGCAAATGAAGTGTTGGCATTGGGTGT
TGGCCGCTTGGGAGGTAGTCAGTCGTAACATCAAGCAAGAGGCACAACGG
ACAACAATGGAAAGCATTTCGTTGATTGCGGATCCATTTCTTGCATCCGG
ATCGATGTTGTTCTCCTGAATGCTTTGCGCCGATGTCTGTAGTCCTCGTG
TGTTTTGTGCAGTCAGATCGTTTCGGAAATAGTGTTGTGCGATGGGCTGG
TTTTTACATGTATCCCCCGTTATTTTCTTTGGCGCGCACGCGCGCACACA
CGCTGGGTGTGGTCACGGAATCGCTTTCTACGCCGCCCCCCAAAAGGGTT
TCCGCCGGCACGATCGATCCTTATCCTTCCTCCCACACCGTACTTCCCTC
GAGGATGAGGAGGACCGTCTTTTTCTCTTAGAGACTTGTTGACTGTGATT
CTTTGTCGAGAAGACGTGTAGCGTGATGCCGTGGTTCTTCAAAGCACACG
CACACGCCCAAACCCCGTCGCAGCTTTTTGCCTGTAGTTCCTGCTGCGCA
CGCTGCTCCCGGCTCTGCTGGAGAATGCCCCCTTGCCTTTCTCTCTCTCT
CTCTCTCTTTCTGGACACTTCTCCTATGCATGCATGCACTTCGAAGTAGT
AGTAAATTCCAAGCAAATGAATTTCCAACGCACGTCCCCCCCCTGGAAGT
AAGCGACAAGCACATTATGTAAGTTCCAACGTATGTACGTCCCCTCCCTT
TTCCCCTTCCCAAATGTACAGGTCGCCACCGCGGTTGCCGTAGGCCTCGA
CAACCTCGGCTCTCTCTGCTCACAGGCCGGCCTGGACCGATGGGAGCTTC
TGGGCCTCGCCGTGCTGTCGGCGATCACCGTCTACCGCAAGGAGCTGTCC
TCCAACAGCGTGTACGGCAAGGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGTAGGCGGTATCACCGCACCGGCGGCGACGGCGGCAGCGCCGTCG
TCGTGCACGTCGACGGCTGCCACGTGGCGATGGCGGCTGCGGCTGCTGCG
GCGGCGGCTGTAGGTGGCCACTAA
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Coding sequence (CDS) from alignment at chr_00:916133..918006-

>Ec-00_000690.1 ID=Ec-00_000690.1|Name=Ec-00_000690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=414bp|location=Sequence derived from alignment at chr_00:916133..918006- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGGCGATCGAGCTGCTGGGGGGGATGGTGAACAGCGTGCTGGAGTT
CCCGCTGGTTGGGTTCCTGGGTCGGCTGGTACCCGTGGGTGGGAGCGAAG
CCGGGCAGCAGGTCGCCACCGCGGTTGCCGTAGGCCTCGACAACCTCGGC
TCTCTCTGCTCACAGGCCGGCCTGGACCGATGGGAGCTTCTGGGCCTCGC
CGTGCTGTCGGCGATCACCGTCTACCGCAAGGAGCTGTCCTCCAACAGCG
TGTACGGCAAGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTAGG
CGGTATCACCGCACCGGCGGCGACGGCGGCAGCGCCGTCGTCGTGCACGT
CGACGGCTGCCACGTGGCGATGGCGGCTGCGGCTGCTGCGGCGGCGGCTG
TAGGTGGCCACTAA
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Synonyms
The feature 'Ec-00_000690.1' has the following synonyms
Synonym
Esi1160_0002
Esi_1160_0002